data_2MFP # _entry.id 2MFP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MFP pdb_00002mfp 10.2210/pdb2mfp/pdb RCSB RCSB103572 ? ? BMRB 19557 ? ? WWPDB D_1000103572 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2L61 PDB 'NMR solution structure of Cd-form of the linear analog g-Ec-1 domain' unspecified 2L62 PDB 'NMR solution structure of Zn-form of the linear analog g-Ec-1 domain' unspecified 19557 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MFP _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-14 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tarasava, K.' 1 'Johannsen, S.' 2 'Freisinger, E.' 3 # _citation.id primary _citation.title 'Solution Structure of the Circular gamma-Domain Analog from the Wheat Metallothionein Ec-1.' _citation.journal_abbrev Molecules _citation.journal_volume 18 _citation.page_first 14414 _citation.page_last 14429 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country CH _citation.journal_id_ISSN 1420-3049 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24284492 _citation.pdbx_database_id_DOI 10.3390/molecules181114414 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tarasava, K.' 1 ? primary 'Johannsen, S.' 2 ? primary 'Freisinger, E.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EC protein I/II' 2792.142 1 ? ? 'GAMMA DOMAIN (UNP residues 2-27)' ? 2 non-polymer syn 'CADMIUM ION' 112.411 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Zinc metallothionein class II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AGCDDKCGCAVPCPGGTGCRCTSARSGGAAG _entity_poly.pdbx_seq_one_letter_code_can AGCDDKCGCAVPCPGGTGCRCTSARSGGAAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLY n 1 3 CYS n 1 4 ASP n 1 5 ASP n 1 6 LYS n 1 7 CYS n 1 8 GLY n 1 9 CYS n 1 10 ALA n 1 11 VAL n 1 12 PRO n 1 13 CYS n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 THR n 1 18 GLY n 1 19 CYS n 1 20 ARG n 1 21 CYS n 1 22 THR n 1 23 SER n 1 24 ALA n 1 25 ARG n 1 26 SER n 1 27 GLY n 1 28 GLY n 1 29 ALA n 1 30 ALA n 1 31 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Canadian hard winter wheat,common wheat,wheat' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Triticum aestivum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4565 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTWIN2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EC1_WHEAT _struct_ref.pdbx_db_accession P30569 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCDDKCGCAVPCPGGTGCRCTSARSG _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MFP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30569 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 27 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 27 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MFP ALA A 1 ? UNP P30569 ? ? 'SEE REMARK 999' 1 1 1 2MFP GLY A 28 ? UNP P30569 ? ? 'SEE REMARK 999' 28 2 1 2MFP ALA A 29 ? UNP P30569 ? ? 'SEE REMARK 999' 29 3 1 2MFP ALA A 30 ? UNP P30569 ? ? 'SEE REMARK 999' 30 4 1 2MFP GLY A 31 ? UNP P30569 ? ? 'SEE REMARK 999' 31 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-113Cd HSQC' 2 4 1 '2D 1H-1H TOCSY' 2 5 1 '2D 1H-1H NOESY' 2 6 1 '2D 1H-113Cd HSQC' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.02 7.5 ambient ? 307.2 K 2 0.02 7.5 ambient ? 295.5 K # _pdbx_nmr_sample_details.contents '0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 700 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' 500 Bruker DRX 3 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2MFP _pdbx_nmr_refine.method 'molecular dynamics, simulated annealing' _pdbx_nmr_refine.details 'RESTRAINT REFINEMENT IN EXPLICIT SOLVENT (WATER), IN TORSION COORDINATES USING NOEASSIGN ALGORITHM' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MFP _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MFP _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Keller and Wuthrich' 'chemical shift assignment' CARA 1.9.0 1 'Keller and Wuthrich' 'peak picking' CARA 1.9.0 2 'Keller and Wuthrich' 'data analysis' CARA 1.9.0 3 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.1 4 Goddard 'chemical shift assignment' Sparky 3.113 5 Goddard 'peak picking' Sparky 3.113 6 Goddard 'data analysis' Sparky 3.113 7 'Bartels et al.' 'data analysis' XEASY 1.3.13 8 'Bartels et al.' 'peak picking' XEASY 1.3.13 9 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.33 10 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.33 11 'Bruker Biospin' processing TopSpin 3.0 12 'Bruker Biospin' collection TopSpin 3.0 13 'Bhattacharya and Montelione' validation PSVS ? 14 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MFP _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MFP _struct.title 'Solution structure of the circular g-domain analog from the wheat metallothionein Ec-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MFP _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'Metallothionein, Metal-thiolate cluster, Backbone cyclized protein, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 4 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 8 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 4 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 8 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 1 N ? ? ? 1_555 A GLY 31 C ? ? A ALA 1 A GLY 31 1_555 ? ? ? ? ? ? ? 1.340 ? ? metalc1 metalc ? ? A CYS 3 SG ? ? ? 1_555 B CD . CD ? ? A CYS 3 A CD 100 1_555 ? ? ? ? ? ? ? 2.586 ? ? metalc2 metalc ? ? A CYS 3 SG ? ? ? 1_555 C CD . CD ? ? A CYS 3 A CD 101 1_555 ? ? ? ? ? ? ? 2.555 ? ? metalc3 metalc ? ? A CYS 7 SG ? ? ? 1_555 C CD . CD ? ? A CYS 7 A CD 101 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc4 metalc ? ? A CYS 9 SG ? ? ? 1_555 B CD . CD ? ? A CYS 9 A CD 100 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc5 metalc ? ? A CYS 9 SG ? ? ? 1_555 C CD . CD ? ? A CYS 9 A CD 101 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc6 metalc ? ? A CYS 13 SG ? ? ? 1_555 B CD . CD ? ? A CYS 13 A CD 100 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc7 metalc ? ? A CYS 19 SG ? ? ? 1_555 B CD . CD ? ? A CYS 19 A CD 100 1_555 ? ? ? ? ? ? ? 2.630 ? ? metalc8 metalc ? ? A CYS 21 SG ? ? ? 1_555 C CD . CD ? ? A CYS 21 A CD 101 1_555 ? ? ? ? ? ? ? 2.651 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 1 -0.75 2 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 2 -0.53 3 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 3 0.85 4 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 4 0.70 5 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 5 0.42 6 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 6 -0.22 7 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 7 0.01 8 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 8 -0.02 9 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 9 0.34 10 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 10 0.40 11 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 11 -0.23 12 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 12 0.54 13 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 13 0.19 14 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 14 -0.28 15 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 15 0.09 16 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 16 -0.02 17 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 17 0.27 18 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 18 -0.20 19 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 19 -0.03 20 VAL 11 A . ? VAL 11 A PRO 12 A ? PRO 12 A 20 -0.80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 100 ? 5 'BINDING SITE FOR RESIDUE CD A 100' AC2 Software A CD 101 ? 5 'BINDING SITE FOR RESIDUE CD A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 3 ? CYS A 3 . ? 1_555 ? 2 AC1 5 CYS A 9 ? CYS A 9 . ? 1_555 ? 3 AC1 5 CYS A 13 ? CYS A 13 . ? 1_555 ? 4 AC1 5 CYS A 19 ? CYS A 19 . ? 1_555 ? 5 AC1 5 CD C . ? CD A 101 . ? 1_555 ? 6 AC2 5 CYS A 3 ? CYS A 3 . ? 1_555 ? 7 AC2 5 CYS A 7 ? CYS A 7 . ? 1_555 ? 8 AC2 5 CYS A 9 ? CYS A 9 . ? 1_555 ? 9 AC2 5 CYS A 21 ? CYS A 21 . ? 1_555 ? 10 AC2 5 CD B . ? CD A 100 . ? 1_555 ? # _atom_sites.entry_id 2MFP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLY 31 31 31 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 100 100 CD CD A . C 2 CD 1 101 101 CD CD A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 3 ? A CYS 3 ? 1_555 CD ? B CD . ? A CD 100 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 105.8 ? 2 SG ? A CYS 3 ? A CYS 3 ? 1_555 CD ? B CD . ? A CD 100 ? 1_555 SG ? A CYS 13 ? A CYS 13 ? 1_555 111.7 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? B CD . ? A CD 100 ? 1_555 SG ? A CYS 13 ? A CYS 13 ? 1_555 100.5 ? 4 SG ? A CYS 3 ? A CYS 3 ? 1_555 CD ? B CD . ? A CD 100 ? 1_555 SG ? A CYS 19 ? A CYS 19 ? 1_555 123.2 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? B CD . ? A CD 100 ? 1_555 SG ? A CYS 19 ? A CYS 19 ? 1_555 109.6 ? 6 SG ? A CYS 13 ? A CYS 13 ? 1_555 CD ? B CD . ? A CD 100 ? 1_555 SG ? A CYS 19 ? A CYS 19 ? 1_555 103.8 ? 7 SG ? A CYS 3 ? A CYS 3 ? 1_555 CD ? C CD . ? A CD 101 ? 1_555 SG ? A CYS 7 ? A CYS 7 ? 1_555 108.9 ? 8 SG ? A CYS 3 ? A CYS 3 ? 1_555 CD ? C CD . ? A CD 101 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 106.0 ? 9 SG ? A CYS 7 ? A CYS 7 ? 1_555 CD ? C CD . ? A CD 101 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 107.5 ? 10 SG ? A CYS 3 ? A CYS 3 ? 1_555 CD ? C CD . ? A CD 101 ? 1_555 SG ? A CYS 21 ? A CYS 21 ? 1_555 119.9 ? 11 SG ? A CYS 7 ? A CYS 7 ? 1_555 CD ? C CD . ? A CD 101 ? 1_555 SG ? A CYS 21 ? A CYS 21 ? 1_555 102.0 ? 12 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? C CD . ? A CD 101 ? 1_555 SG ? A CYS 21 ? A CYS 21 ? 1_555 112.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-27 2 'Structure model' 1 1 2013-12-25 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.value' 11 3 'Structure model' '_struct_conn.pdbx_dist_value' 12 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_entry_details.entry_id 2MFP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AUTHORS STATE THAT THESE RESIDUES ARE ARTIFICIAL ONES THAT WERE INSERTED AS LINKER TO ENABLE THE CYCLIZATION OF THIS SMALL GAMMA-DOMAIN. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.8 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2MFP _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id cyc-gEc1-1 0.9 ? mM ? 1 'CADMIUM ION-2' 1.8 ? mM 113Cd 1 TRIS-3 10 ? mM '[U-99% 2H]' 1 'sodium perchlorate-4' 10 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MFP _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 201 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count 21 _pdbx_nmr_constraints.NOE_medium_range_total_count 38 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 SER A 23 ? ? -145.08 11.65 2 3 SER A 23 ? ? 71.14 35.01 3 3 ARG A 25 ? ? -178.61 -41.09 4 4 CYS A 21 ? ? -147.36 23.33 5 5 ASP A 4 ? ? -145.71 -159.07 6 5 ALA A 29 ? ? 70.66 84.52 7 7 CYS A 21 ? ? -145.17 -35.44 8 8 CYS A 21 ? ? -145.01 -51.82 9 8 THR A 22 ? ? -59.04 99.22 10 8 ARG A 25 ? ? -142.91 -40.93 11 8 ALA A 30 ? ? 67.45 -67.29 12 9 ALA A 29 ? ? 61.84 -84.14 13 10 CYS A 21 ? ? -150.92 25.30 14 10 SER A 26 ? ? -157.62 26.00 15 10 ALA A 30 ? ? -173.53 -174.42 16 11 CYS A 21 ? ? -157.07 15.60 17 12 ALA A 30 ? ? -176.70 145.16 18 13 ASP A 4 ? ? -140.22 -159.70 19 13 CYS A 21 ? ? -153.94 36.24 20 13 ALA A 29 ? ? -137.53 -59.26 21 13 ALA A 30 ? ? -126.66 -63.04 22 14 ALA A 24 ? ? -143.00 -56.97 23 14 ARG A 25 ? ? -163.70 108.06 24 15 CYS A 21 ? ? -154.56 -24.39 25 16 CYS A 21 ? ? -158.88 -36.53 26 16 ALA A 29 ? ? -147.97 14.92 27 17 CYS A 21 ? ? -156.68 -24.97 28 18 CYS A 21 ? ? -154.64 21.54 29 18 ARG A 25 ? ? -140.34 -73.31 30 19 CYS A 21 ? ? -155.17 16.16 31 19 SER A 23 ? ? -142.78 20.46 32 19 ALA A 24 ? ? -123.54 -72.40 33 20 SER A 23 ? ? 73.14 -4.71 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'CADMIUM ION' _pdbx_entity_nonpoly.comp_id CD #