HEADER PENICILLIN BINDING PROTEIN 11-NOV-13 2MGV TITLE NMR STRUCTURE OF PASTA DOMAIN OF PONA2 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL MEMBRANE-ASSOCIATED PENICILLIN-BINDING PROTEIN COMPND 3 1A/1B PONA2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PASTA DOMAIN (UNP RESIDUES 700-764); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RVBD_3682; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS PASTA DOMAIN, PENICILLIN BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR L.CALVANESE,L.FALCIGNO,C.MAGLIONE,D.MARASCO,A.RUGGIERO,F.SQUEGLIA, AUTHOR 2 R.BERISIO,G.D'AURIA REVDAT 3 14-JUN-23 2MGV 1 REMARK REVDAT 2 07-MAY-14 2MGV 1 JRNL REVDAT 1 25-DEC-13 2MGV 0 JRNL AUTH L.CALVANESE,L.FALCIGNO,C.MAGLIONE,D.MARASCO,A.RUGGIERO, JRNL AUTH 2 F.SQUEGLIA,R.BERISIO,G.D'AURIA JRNL TITL STRUCTURAL AND BINDING PROPERTIES OF THE PASTA DOMAIN OF JRNL TITL 2 PONA2, A KEY PENICILLIN BINDING PROTEIN FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF BIOPOLYMERS V. 101 712 2014 JRNL REFN ISSN 0006-3525 JRNL PMID 24281824 JRNL DOI 10.1002/BIP.22447 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000103601. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5-1.6 MM PONA2-PASTA, 10% D2O, REMARK 210 30 MM SODIUM PHOSPHATE, 0.02% REMARK 210 SODIUM AZIDE, 90% PHOSPHATE REMARK 210 BUFFER/10% D2O; 1.8-1.9 MM [U- REMARK 210 100% 15N] PONA2-PASTA, 10% D2O, REMARK 210 30 MM SODIUM PHOSPHATE, 0.02% REMARK 210 SODIUM AZIDE, 90% PHOSPHATE REMARK 210 BUFFER/10% D2O; 1.3 MM [U-100% REMARK 210 13C; U-100% 15N] PONA2-PASTA, 10% REMARK 210 D2O, 30 MM SODIUM PHOSPHATE, REMARK 210 0.02% SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D DQF-COSY; 3D REMARK 210 HNCO; 3D HNCACB; 3D HCCH-TOCSY; REMARK 210 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.9.0 BETA 3, SPARKY 3, REMARK 210 TALOS, PROCHECKNMR, PSVS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 76.79 -173.16 REMARK 500 1 SER A 55 -167.46 -109.41 REMARK 500 2 ARG A 3 79.84 -176.69 REMARK 500 2 SER A 55 -167.42 -108.71 REMARK 500 3 SER A 2 94.23 -167.16 REMARK 500 3 ARG A 3 84.14 -175.10 REMARK 500 3 SER A 55 -167.41 -108.85 REMARK 500 4 SER A 2 -177.22 -175.50 REMARK 500 4 ARG A 3 82.11 59.82 REMARK 500 4 GLN A 29 101.04 -55.32 REMARK 500 4 SER A 55 -167.33 -107.38 REMARK 500 5 SER A 2 -175.84 -59.16 REMARK 500 5 ARG A 3 78.36 63.54 REMARK 500 5 SER A 55 -167.36 -107.66 REMARK 500 6 SER A 2 75.46 -171.76 REMARK 500 6 ARG A 3 77.03 -162.39 REMARK 500 6 SER A 55 -167.65 -109.13 REMARK 500 7 SER A 2 -176.73 -179.52 REMARK 500 7 ARG A 3 77.74 60.34 REMARK 500 7 SER A 55 -167.69 -109.21 REMARK 500 8 SER A 2 106.66 -56.68 REMARK 500 8 ARG A 3 76.88 -166.97 REMARK 500 8 SER A 55 -166.76 -109.27 REMARK 500 9 SER A 2 99.51 -60.59 REMARK 500 9 ARG A 3 76.98 -163.11 REMARK 500 9 SER A 55 -167.68 -108.94 REMARK 500 10 ARG A 3 78.47 63.45 REMARK 500 10 SER A 55 -167.45 -108.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19605 RELATED DB: BMRB DBREF 2MGV A 1 65 UNP I6YGX2 I6YGX2_MYCTU 700 764 SEQRES 1 A 65 GLY SER ARG VAL PRO SER VAL ALA GLY LEU ASP VAL ASP SEQRES 2 A 65 ALA ALA ARG GLN ARG LEU LYS ASP ALA GLY PHE GLN VAL SEQRES 3 A 65 ALA ASP GLN THR ASN SER VAL ASN SER SER ALA LYS TYR SEQRES 4 A 65 GLY GLU VAL VAL GLY THR SER PRO SER GLY GLN THR ILE SEQRES 5 A 65 PRO GLY SER ILE VAL THR ILE GLN ILE SER ASN GLY ILE HELIX 1 1 ASP A 11 ALA A 22 1 12 SHEET 1 A 3 SER A 32 ASN A 34 0 SHEET 2 A 3 ILE A 59 ASN A 63 1 O ASN A 63 N VAL A 33 SHEET 3 A 3 VAL A 42 THR A 45 -1 N GLY A 44 O GLN A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1