HEADER PROTEIN BINDING 09-NOV-13 2MGW TITLE SOLUTION STRUCTURE OF THE UBA DOMAIN OF HUMAN NBR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEXT TO BRCA1 GENE 1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 913-959; COMPND 5 SYNONYM: CELL MIGRATION-INDUCING GENE 19 PROTEIN, MEMBRANE COMPONENT COMPND 6 CHROMOSOME 17 SURFACE MARKER 2, NEIGHBOR OF BRCA1 GENE 1 PROTEIN, COMPND 7 PROTEIN 1A1-3B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NBR1, 1A13B, KIAA0049, M17S2, MIG19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P1 KEYWDS AUTOPHAGY, PROTEIN DEGRADATION, UBIQUITIN BINDING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.WALINDA,D.MORIMOTO,K.SUGASE,M.KOMATSU,H.TOCHIO,M.SHIRAKAWA REVDAT 5 15-MAY-24 2MGW 1 REMARK REVDAT 4 14-JUN-23 2MGW 1 REMARK REVDAT 3 24-AUG-22 2MGW 1 JRNL REMARK SEQADV REVDAT 2 25-JUN-14 2MGW 1 JRNL REVDAT 1 09-APR-14 2MGW 0 JRNL AUTH E.WALINDA,D.MORIMOTO,K.SUGASE,T.KONUMA,H.TOCHIO,M.SHIRAKAWA JRNL TITL SOLUTION STRUCTURE OF THE UBIQUITIN-ASSOCIATED (UBA) DOMAIN JRNL TITL 2 OF HUMAN AUTOPHAGY RECEPTOR NBR1 AND ITS INTERACTION WITH JRNL TITL 3 UBIQUITIN AND POLYUBIQUITIN. JRNL REF J.BIOL.CHEM. V. 289 13890 2014 JRNL REFN ESSN 1083-351X JRNL PMID 24692539 JRNL DOI 10.1074/JBC.M114.555441 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.0, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000103602. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE-1, 5 REMARK 210 MM POTASSIUM CHLORIDE-2, 1 MM REMARK 210 EDTA-3, 1 MM BENZAMIDINE-4, 1 MM REMARK 210 DTT-5, 0.02 % SODIUM AZIDE-6, REMARK 210 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 NBR1 RESIDUES 913-959-7, 95% H2O/ REMARK 210 5% D2O; 20 MM POTASSIUM REMARK 210 PHOSPHATE-8, 5 MM POTASSIUM REMARK 210 CHLORIDE-9, 1 MM EDTA-10, 1 MM REMARK 210 BENZAMIDINE-11, 1 MM DTT-12, REMARK 210 0.02 % SODIUM AZIDE-13, 0.5 MM REMARK 210 [U-100% 13C; U-100% 15N] NBR1 REMARK 210 RESIDUES 913-959-14, 12.5 MG/ML REMARK 210 PF1 PHAGE-15, 150 MM SODIUM REMARK 210 CHLORIDE-16, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D C(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 2D 1H-15N HSQC IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, CYANA, NMRPIPE, MAGRO REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 912 -178.97 -68.78 REMARK 500 1 ASN A 943 61.96 66.28 REMARK 500 2 ASN A 943 63.48 65.98 REMARK 500 3 ASN A 943 62.84 66.09 REMARK 500 3 ASN A 958 -61.88 -91.47 REMARK 500 4 ASN A 943 69.21 66.17 REMARK 500 4 ASN A 945 78.88 -119.13 REMARK 500 5 LEU A 910 -62.36 -132.74 REMARK 500 5 ASN A 943 63.53 66.03 REMARK 500 6 PRO A 909 93.88 -69.69 REMARK 500 6 ASP A 931 78.98 -110.87 REMARK 500 7 ASN A 943 63.19 66.07 REMARK 500 8 ASP A 931 78.70 -102.46 REMARK 500 8 ASN A 943 63.11 66.04 REMARK 500 9 ASN A 943 60.39 66.07 REMARK 500 10 PRO A 909 -179.24 -69.80 REMARK 500 10 ASN A 943 61.69 66.19 REMARK 500 11 ASN A 943 67.92 65.82 REMARK 500 12 ASN A 943 63.22 66.18 REMARK 500 13 ASN A 943 62.64 65.87 REMARK 500 14 ASN A 943 63.18 66.02 REMARK 500 15 ASN A 943 64.22 65.68 REMARK 500 16 ASN A 943 62.29 66.08 REMARK 500 17 ASN A 943 70.67 65.92 REMARK 500 17 ASN A 945 78.34 -119.43 REMARK 500 18 ASP A 931 79.14 -115.65 REMARK 500 18 ASN A 943 65.45 65.64 REMARK 500 19 PRO A 909 83.88 -69.76 REMARK 500 20 ASN A 943 65.06 66.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19606 RELATED DB: BMRB REMARK 900 RELATED ID: 2MJ5 RELATED DB: PDB DBREF 2MGW A 913 959 UNP Q14596 NBR1_HUMAN 913 959 SEQADV 2MGW GLY A 908 UNP Q14596 EXPRESSION TAG SEQADV 2MGW PRO A 909 UNP Q14596 EXPRESSION TAG SEQADV 2MGW LEU A 910 UNP Q14596 EXPRESSION TAG SEQADV 2MGW GLY A 911 UNP Q14596 EXPRESSION TAG SEQADV 2MGW SER A 912 UNP Q14596 EXPRESSION TAG SEQRES 1 A 52 GLY PRO LEU GLY SER SER GLU ASP GLN THR ALA ALA LEU SEQRES 2 A 52 MET ALA HIS LEU PHE GLU MET GLY PHE CYS ASP ARG GLN SEQRES 3 A 52 LEU ASN LEU ARG LEU LEU LYS LYS HIS ASN TYR ASN ILE SEQRES 4 A 52 LEU GLN VAL VAL THR GLU LEU LEU GLN LEU ASN ASN ASN HELIX 1 1 GLU A 914 GLU A 926 1 13 HELIX 2 2 ASP A 931 ASN A 943 1 13 HELIX 3 3 ASN A 945 ASN A 957 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1