data_2MH5 # _entry.id 2MH5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MH5 pdb_00002mh5 10.2210/pdb2mh5/pdb RCSB RCSB103611 ? ? BMRB 19619 ? ? WWPDB D_1000103611 ? ? # _pdbx_database_related.db_id 19619 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MH5 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-11-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Munch, D.' 1 'Muller, A.' 2 'Schneider, T.' 3 'Kohl, B.' 4 'Wenzel, M.' 5 'Bandow, J.' 6 'Maffioli, S.' 7 'Sosio, M.' 8 'Donadio, S.' 9 'Wimmer, R.' 10 'Sahl, H.' 11 # _citation.id primary _citation.title 'The Lantibiotic NAI-107 Binds to Bactoprenol-bound Cell Wall Precursors and Impairs Membrane Functions.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 12063 _citation.page_last 12076 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24627484 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.537449 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Munch, D.' 1 ? primary 'Muller, A.' 2 ? primary 'Schneider, T.' 3 ? primary 'Kohl, B.' 4 ? primary 'Wenzel, M.' 5 ? primary 'Bandow, J.E.' 6 ? primary 'Maffioli, S.' 7 ? primary 'Sosio, M.' 8 ? primary 'Donadio, S.' 9 ? primary 'Wimmer, R.' 10 ? primary 'Sahl, H.G.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lantibiotic 107891' 2243.031 1 ? ? ? ? 2 non-polymer syn 'dodecyl 2-(trimethylammonio)ethyl phosphate' 351.462 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'V(DBU)(DAL)(5CW)(DHA)LC(DBB)PGCT(DAL)(HYP)GGG(DAL)NC(DAL)FC(TEE)' _entity_poly.pdbx_seq_one_letter_code_can VTAWSLCTPGCTAPGGGANCAFCX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 DBU n 1 3 DAL n 1 4 5CW n 1 5 DHA n 1 6 LEU n 1 7 CYS n 1 8 DBB n 1 9 PRO n 1 10 GLY n 1 11 CYS n 1 12 THR n 1 13 DAL n 1 14 HYP n 1 15 GLY n 1 16 GLY n 1 17 GLY n 1 18 DAL n 1 19 ASN n 1 20 CYS n 1 21 DAL n 1 22 PHE n 1 23 CYS n 1 24 TEE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific Microbispora _entity_src_nat.pdbx_ncbi_taxonomy_id 415003 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain 107891 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LAN91_MICS0 _struct_ref.pdbx_db_accession P85065 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VTSWSLCTPGCTSPGGGSNCSFCC _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MH5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P85065 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MH5 DAL A 3 ? UNP P85065 SER 3 conflict 3 1 1 2MH5 DBB A 8 ? UNP P85065 THR 8 conflict 8 2 1 2MH5 DAL A 13 ? UNP P85065 SER 13 conflict 13 3 1 2MH5 DAL A 18 ? UNP P85065 SER 18 conflict 18 4 1 2MH5 DAL A 21 ? UNP P85065 SER 21 conflict 21 5 1 2MH5 TEE A 24 ? UNP P85065 CYS 24 conflict 24 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CW 'L-peptide linking' n 5-chloro-L-tryptophan ? 'C11 H11 Cl N2 O2' 238.670 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 DPV non-polymer . 'dodecyl 2-(trimethylammonio)ethyl phosphate' dodecylphosphocholine 'C17 H38 N O4 P' 351.462 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TEE non-polymer . 2-AMINO-ETHENETHIOL 2-THIOETHENAMINE 'C2 H5 N S' 75.133 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-13C HSQC aliphatic' 1 4 1 '2D 1H-13C HSQC aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 310.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '3.5 mM entity_1, 150 mM [U-2H] dodecylphosphocholine-d38, 10 mM potassium phosphate, 0.02 mM 2,2,3,3-D TSP-d4, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVIII 1 'Bruker AVIII' 900 Bruker AVANCE 2 'Bruker Avance' 600 Bruker DRX 3 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2MH5 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;Refinement was done in two steps: first in vacuo and then with explicit micelle/water system. The pseudo atoms labeled ANI are included in the constraint file. These define an alignment frame used in the structural interpretation of rdc data. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 80 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MH5 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MH5 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 3.1 1 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 2 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 3 'Yasara Biosciences' refinement YASARA ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MH5 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MH5 _struct.title 'Structure and NMR assignments of lantibiotic NAI-107 in DPC micelles' _struct.pdbx_model_details 'fewest violations, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MH5 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'lantibiotic, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 2 ? CA N N 2 ? DA N N 2 ? EA N N 2 ? FA N N 2 ? GA N N 2 ? HA N N 2 ? IA N N 2 ? JA N N 2 ? KA N N 2 ? LA N N 2 ? MA N N 2 ? NA N N 2 ? OA N N 2 ? PA N N 2 ? QA N N 2 ? RA N N 2 ? SA N N 2 ? TA N N 2 ? UA N N 2 ? VA N N 2 ? WA N N 2 ? XA N N 2 ? YA N N 2 ? ZA N N 2 ? AB N N 2 ? BB N N 2 ? CB N N 2 ? DB N N 2 ? EB N N 2 ? FB N N 2 ? GB N N 2 ? HB N N 2 ? IB N N 2 ? JB N N 2 ? KB N N 2 ? LB N N 2 ? MB N N 2 ? NB N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 16 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id DAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 21 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 16 _struct_conf.end_auth_comp_id DAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 21 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 1 C ? ? ? 1_555 A DBU 2 N ? ? A VAL 1 A DBU 2 1_555 ? ? ? ? ? ? ? 1.358 sing ? covale2 covale both ? A DBU 2 C ? ? ? 1_555 A DAL 3 N ? ? A DBU 2 A DAL 3 1_555 ? ? ? ? ? ? ? 1.357 sing ? covale3 covale both ? A DAL 3 C ? ? ? 1_555 A 5CW 4 N ? ? A DAL 3 A 5CW 4 1_555 ? ? ? ? ? ? ? 1.359 sing ? covale4 covale none ? A DAL 3 CB ? ? ? 1_555 A CYS 7 SG ? ? A DAL 3 A CYS 7 1_555 ? ? ? ? ? ? ? 1.842 sing ? covale5 covale both ? A 5CW 4 C ? ? ? 1_555 A DHA 5 N ? ? A 5CW 4 A DHA 5 1_555 ? ? ? ? ? ? ? 1.345 sing ? covale6 covale both ? A DHA 5 C ? ? ? 1_555 A LEU 6 N ? ? A DHA 5 A LEU 6 1_555 ? ? ? ? ? ? ? 1.361 sing ? covale7 covale one ? A CYS 7 C ? ? ? 1_555 A DBB 8 N ? ? A CYS 7 A DBB 8 1_555 ? ? ? ? ? ? ? 1.349 sing ? covale8 covale both ? A DBB 8 C ? ? ? 1_555 A PRO 9 N ? ? A DBB 8 A PRO 9 1_555 ? ? ? ? ? ? ? 1.401 sing ? covale9 covale none ? A DBB 8 CB ? ? ? 1_555 A CYS 11 SG ? ? A DBB 8 A CYS 11 1_555 ? ? ? ? ? ? ? 1.885 sing ? covale10 covale both ? A THR 12 C ? ? ? 1_555 A DAL 13 N ? ? A THR 12 A DAL 13 1_555 ? ? ? ? ? ? ? 1.363 sing ? covale11 covale both ? A DAL 13 C ? ? ? 1_555 A HYP 14 N ? ? A DAL 13 A HYP 14 1_555 ? ? ? ? ? ? ? 1.406 sing ? covale12 covale none ? A DAL 13 CB ? ? ? 1_555 A CYS 20 SG ? ? A DAL 13 A CYS 20 1_555 ? ? ? ? ? ? ? 1.849 sing ? covale13 covale both ? A HYP 14 C ? ? ? 1_555 A GLY 15 N ? ? A HYP 14 A GLY 15 1_555 ? ? ? ? ? ? ? 1.325 sing ? covale14 covale both ? A GLY 17 C ? ? ? 1_555 A DAL 18 N ? ? A GLY 17 A DAL 18 1_555 ? ? ? ? ? ? ? 1.344 sing ? covale15 covale both ? A DAL 18 C ? ? ? 1_555 A ASN 19 N ? ? A DAL 18 A ASN 19 1_555 ? ? ? ? ? ? ? 1.352 sing ? covale16 covale none ? A DAL 18 CB ? ? ? 1_555 A CYS 23 SG ? ? A DAL 18 A CYS 23 1_555 ? ? ? ? ? ? ? 1.845 sing ? covale17 covale both ? A CYS 20 C ? ? ? 1_555 A DAL 21 N ? ? A CYS 20 A DAL 21 1_555 ? ? ? ? ? ? ? 1.358 sing ? covale18 covale both ? A DAL 21 C ? ? ? 1_555 A PHE 22 N ? ? A DAL 21 A PHE 22 1_555 ? ? ? ? ? ? ? 1.360 sing ? covale19 covale none ? A DAL 21 CB ? ? ? 1_555 A TEE 24 SG ? ? A DAL 21 A TEE 24 1_555 ? ? ? ? ? ? ? 1.855 sing ? covale20 covale one ? A CYS 23 C ? ? ? 1_555 A TEE 24 N ? ? A CYS 23 A TEE 24 1_555 ? ? ? ? ? ? ? 1.329 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DPV 101 ? 3 'BINDING SITE FOR RESIDUE DPV A 101' AC2 Software A DPV 102 ? 1 'BINDING SITE FOR RESIDUE DPV A 102' AC3 Software A DPV 103 ? 3 'BINDING SITE FOR RESIDUE DPV A 103' AC4 Software A DPV 104 ? 4 'BINDING SITE FOR RESIDUE DPV A 104' AC5 Software A DPV 105 ? 1 'BINDING SITE FOR RESIDUE DPV A 105' AC6 Software A DPV 106 ? 2 'BINDING SITE FOR RESIDUE DPV A 106' AC7 Software A DPV 107 ? 3 'BINDING SITE FOR RESIDUE DPV A 107' AC8 Software A DPV 108 ? 3 'BINDING SITE FOR RESIDUE DPV A 108' AC9 Software A DPV 109 ? 3 'BINDING SITE FOR RESIDUE DPV A 109' BC1 Software A DPV 110 ? 4 'BINDING SITE FOR RESIDUE DPV A 110' BC2 Software A DPV 111 ? 4 'BINDING SITE FOR RESIDUE DPV A 111' BC3 Software A DPV 112 ? 2 'BINDING SITE FOR RESIDUE DPV A 112' BC4 Software A DPV 113 ? 2 'BINDING SITE FOR RESIDUE DPV A 113' BC5 Software A DPV 114 ? 3 'BINDING SITE FOR RESIDUE DPV A 114' BC6 Software A DPV 115 ? 5 'BINDING SITE FOR RESIDUE DPV A 115' BC7 Software A DPV 116 ? 3 'BINDING SITE FOR RESIDUE DPV A 116' BC8 Software A DPV 117 ? 5 'BINDING SITE FOR RESIDUE DPV A 117' BC9 Software A DPV 119 ? 2 'BINDING SITE FOR RESIDUE DPV A 119' CC1 Software A DPV 120 ? 4 'BINDING SITE FOR RESIDUE DPV A 120' CC2 Software A DPV 121 ? 2 'BINDING SITE FOR RESIDUE DPV A 121' CC3 Software A DPV 122 ? 1 'BINDING SITE FOR RESIDUE DPV A 122' CC4 Software A DPV 123 ? 5 'BINDING SITE FOR RESIDUE DPV A 123' CC5 Software A DPV 124 ? 1 'BINDING SITE FOR RESIDUE DPV A 124' CC6 Software A DPV 125 ? 5 'BINDING SITE FOR RESIDUE DPV A 125' CC7 Software A DPV 126 ? 3 'BINDING SITE FOR RESIDUE DPV A 126' CC8 Software A DPV 127 ? 4 'BINDING SITE FOR RESIDUE DPV A 127' CC9 Software A DPV 128 ? 3 'BINDING SITE FOR RESIDUE DPV A 128' DC1 Software A DPV 129 ? 1 'BINDING SITE FOR RESIDUE DPV A 129' DC2 Software A DPV 130 ? 3 'BINDING SITE FOR RESIDUE DPV A 130' DC3 Software A DPV 131 ? 2 'BINDING SITE FOR RESIDUE DPV A 131' DC4 Software A DPV 132 ? 2 'BINDING SITE FOR RESIDUE DPV A 132' DC5 Software A DPV 133 ? 3 'BINDING SITE FOR RESIDUE DPV A 133' DC6 Software A DPV 134 ? 3 'BINDING SITE FOR RESIDUE DPV A 134' DC7 Software A DPV 135 ? 5 'BINDING SITE FOR RESIDUE DPV A 135' DC8 Software A DPV 136 ? 3 'BINDING SITE FOR RESIDUE DPV A 136' DC9 Software A DPV 137 ? 2 'BINDING SITE FOR RESIDUE DPV A 137' EC1 Software A DPV 138 ? 5 'BINDING SITE FOR RESIDUE DPV A 138' EC2 Software A DPV 139 ? 2 'BINDING SITE FOR RESIDUE DPV A 139' EC3 Software A DPV 140 ? 3 'BINDING SITE FOR RESIDUE DPV A 140' EC4 Software A DPV 141 ? 4 'BINDING SITE FOR RESIDUE DPV A 141' EC5 Software A DPV 142 ? 5 'BINDING SITE FOR RESIDUE DPV A 142' EC6 Software A DPV 143 ? 2 'BINDING SITE FOR RESIDUE DPV A 143' EC7 Software A DPV 144 ? 3 'BINDING SITE FOR RESIDUE DPV A 144' EC8 Software A DPV 145 ? 4 'BINDING SITE FOR RESIDUE DPV A 145' EC9 Software A DPV 146 ? 3 'BINDING SITE FOR RESIDUE DPV A 146' FC1 Software A DPV 147 ? 2 'BINDING SITE FOR RESIDUE DPV A 147' FC2 Software A DPV 148 ? 2 'BINDING SITE FOR RESIDUE DPV A 148' FC3 Software A DPV 149 ? 1 'BINDING SITE FOR RESIDUE DPV A 149' FC4 Software A DPV 150 ? 1 'BINDING SITE FOR RESIDUE DPV A 150' FC5 Software A DPV 151 ? 2 'BINDING SITE FOR RESIDUE DPV A 151' FC6 Software A DPV 152 ? 2 'BINDING SITE FOR RESIDUE DPV A 152' FC7 Software A DPV 153 ? 4 'BINDING SITE FOR RESIDUE DPV A 153' FC8 Software A DPV 154 ? 2 'BINDING SITE FOR RESIDUE DPV A 154' FC9 Software A DPV 155 ? 3 'BINDING SITE FOR RESIDUE DPV A 155' GC1 Software A DPV 156 ? 2 'BINDING SITE FOR RESIDUE DPV A 156' GC2 Software A DPV 157 ? 3 'BINDING SITE FOR RESIDUE DPV A 157' GC3 Software A DPV 158 ? 3 'BINDING SITE FOR RESIDUE DPV A 158' GC4 Software A DPV 159 ? 1 'BINDING SITE FOR RESIDUE DPV A 159' GC5 Software A DPV 160 ? 3 'BINDING SITE FOR RESIDUE DPV A 160' GC6 Software A DPV 161 ? 5 'BINDING SITE FOR RESIDUE DPV A 161' GC7 Software A DPV 162 ? 4 'BINDING SITE FOR RESIDUE DPV A 162' GC8 Software A DPV 163 ? 1 'BINDING SITE FOR RESIDUE DPV A 163' GC9 Software A DPV 164 ? 4 'BINDING SITE FOR RESIDUE DPV A 164' HC1 Software A DPV 165 ? 2 'BINDING SITE FOR RESIDUE DPV A 165' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DPV C . ? DPV A 102 . ? 1_555 ? 2 AC1 3 DPV D . ? DPV A 103 . ? 1_555 ? 3 AC1 3 DPV ZA . ? DPV A 151 . ? 1_555 ? 4 AC2 1 DPV B . ? DPV A 101 . ? 1_555 ? 5 AC3 3 DPV B . ? DPV A 101 . ? 1_555 ? 6 AC3 3 DPV P . ? DPV A 115 . ? 1_555 ? 7 AC3 3 DPV EA . ? DPV A 130 . ? 1_555 ? 8 AC4 4 DPV T . ? DPV A 119 . ? 1_555 ? 9 AC4 4 DPV FA . ? DPV A 131 . ? 1_555 ? 10 AC4 4 DPV GA . ? DPV A 132 . ? 1_555 ? 11 AC4 4 DPV LB . ? DPV A 163 . ? 1_555 ? 12 AC5 1 DPV V . ? DPV A 121 . ? 1_555 ? 13 AC6 2 5CW A 4 ? 5CW A 4 . ? 1_555 ? 14 AC6 2 DPV BB . ? DPV A 153 . ? 1_555 ? 15 AC7 3 DPV J . ? DPV A 109 . ? 1_555 ? 16 AC7 3 DPV IA . ? DPV A 134 . ? 1_555 ? 17 AC7 3 DPV TA . ? DPV A 145 . ? 1_555 ? 18 AC8 3 DPV K . ? DPV A 110 . ? 1_555 ? 19 AC8 3 DPV W . ? DPV A 122 . ? 1_555 ? 20 AC8 3 DPV X . ? DPV A 123 . ? 1_555 ? 21 AC9 3 DPV H . ? DPV A 107 . ? 1_555 ? 22 AC9 3 DPV JA . ? DPV A 135 . ? 1_555 ? 23 AC9 3 DPV TA . ? DPV A 145 . ? 1_555 ? 24 BC1 4 DPV I . ? DPV A 108 . ? 1_555 ? 25 BC1 4 DPV X . ? DPV A 123 . ? 1_555 ? 26 BC1 4 DPV KA . ? DPV A 136 . ? 1_555 ? 27 BC1 4 DPV MB . ? DPV A 164 . ? 1_555 ? 28 BC2 4 LEU A 6 ? LEU A 6 . ? 1_555 ? 29 BC2 4 DBB A 8 ? DBB A 8 . ? 1_555 ? 30 BC2 4 DPV Z . ? DPV A 125 . ? 1_555 ? 31 BC2 4 DPV DB . ? DPV A 155 . ? 1_555 ? 32 BC3 2 DPV CA . ? DPV A 128 . ? 1_555 ? 33 BC3 2 DPV GB . ? DPV A 158 . ? 1_555 ? 34 BC4 2 DPV AA . ? DPV A 126 . ? 1_555 ? 35 BC4 2 DPV CA . ? DPV A 128 . ? 1_555 ? 36 BC5 3 DPV BA . ? DPV A 127 . ? 1_555 ? 37 BC5 3 DPV VA . ? DPV A 147 . ? 1_555 ? 38 BC5 3 DPV WA . ? DPV A 148 . ? 1_555 ? 39 BC6 5 DPV D . ? DPV A 103 . ? 1_555 ? 40 BC6 5 DPV Q . ? DPV A 116 . ? 1_555 ? 41 BC6 5 DPV EA . ? DPV A 130 . ? 1_555 ? 42 BC6 5 DPV QA . ? DPV A 142 . ? 1_555 ? 43 BC6 5 DPV JB . ? DPV A 161 . ? 1_555 ? 44 BC7 3 DPV P . ? DPV A 115 . ? 1_555 ? 45 BC7 3 DPV R . ? DPV A 117 . ? 1_555 ? 46 BC7 3 DPV JB . ? DPV A 161 . ? 1_555 ? 47 BC8 5 DPV Q . ? DPV A 116 . ? 1_555 ? 48 BC8 5 DPV PA . ? DPV A 141 . ? 1_555 ? 49 BC8 5 DPV VA . ? DPV A 147 . ? 1_555 ? 50 BC8 5 DPV XA . ? DPV A 149 . ? 1_555 ? 51 BC8 5 DPV JB . ? DPV A 161 . ? 1_555 ? 52 BC9 2 DPV E . ? DPV A 104 . ? 1_555 ? 53 BC9 2 DPV GA . ? DPV A 132 . ? 1_555 ? 54 CC1 4 DPV V . ? DPV A 121 . ? 1_555 ? 55 CC1 4 DPV HA . ? DPV A 133 . ? 1_555 ? 56 CC1 4 DPV RA . ? DPV A 143 . ? 1_555 ? 57 CC1 4 DPV SA . ? DPV A 144 . ? 1_555 ? 58 CC2 2 DPV F . ? DPV A 105 . ? 1_555 ? 59 CC2 2 DPV U . ? DPV A 120 . ? 1_555 ? 60 CC3 1 DPV I . ? DPV A 108 . ? 1_555 ? 61 CC4 5 DPV I . ? DPV A 108 . ? 1_555 ? 62 CC4 5 DPV K . ? DPV A 110 . ? 1_555 ? 63 CC4 5 DPV AA . ? DPV A 126 . ? 1_555 ? 64 CC4 5 DPV UA . ? DPV A 146 . ? 1_555 ? 65 CC4 5 DPV MB . ? DPV A 164 . ? 1_555 ? 66 CC5 1 DPV GB . ? DPV A 158 . ? 1_555 ? 67 CC6 5 GLY A 10 ? GLY A 10 . ? 1_555 ? 68 CC6 5 DPV L . ? DPV A 111 . ? 1_555 ? 69 CC6 5 DPV LA . ? DPV A 137 . ? 1_555 ? 70 CC6 5 DPV MA . ? DPV A 138 . ? 1_555 ? 71 CC6 5 DPV MB . ? DPV A 164 . ? 1_555 ? 72 CC7 3 DPV N . ? DPV A 113 . ? 1_555 ? 73 CC7 3 DPV X . ? DPV A 123 . ? 1_555 ? 74 CC7 3 DPV WA . ? DPV A 148 . ? 1_555 ? 75 CC8 4 DPV O . ? DPV A 114 . ? 1_555 ? 76 CC8 4 DPV PA . ? DPV A 141 . ? 1_555 ? 77 CC8 4 DPV QA . ? DPV A 142 . ? 1_555 ? 78 CC8 4 DPV ZA . ? DPV A 151 . ? 1_555 ? 79 CC9 3 DPV M . ? DPV A 112 . ? 1_555 ? 80 CC9 3 DPV N . ? DPV A 113 . ? 1_555 ? 81 CC9 3 DPV DA . ? DPV A 129 . ? 1_555 ? 82 DC1 1 DPV CA . ? DPV A 128 . ? 1_555 ? 83 DC2 3 DPV D . ? DPV A 103 . ? 1_555 ? 84 DC2 3 DPV P . ? DPV A 115 . ? 1_555 ? 85 DC2 3 DPV FA . ? DPV A 131 . ? 1_555 ? 86 DC3 2 DPV E . ? DPV A 104 . ? 1_555 ? 87 DC3 2 DPV EA . ? DPV A 130 . ? 1_555 ? 88 DC4 2 DPV E . ? DPV A 104 . ? 1_555 ? 89 DC4 2 DPV T . ? DPV A 119 . ? 1_555 ? 90 DC5 3 DPV U . ? DPV A 120 . ? 1_555 ? 91 DC5 3 DPV SA . ? DPV A 144 . ? 1_555 ? 92 DC5 3 DPV HB . ? DPV A 159 . ? 1_555 ? 93 DC6 3 DPV H . ? DPV A 107 . ? 1_555 ? 94 DC6 3 DPV JA . ? DPV A 135 . ? 1_555 ? 95 DC6 3 DPV CB . ? DPV A 154 . ? 1_555 ? 96 DC7 5 DPV J . ? DPV A 109 . ? 1_555 ? 97 DC7 5 DPV IA . ? DPV A 134 . ? 1_555 ? 98 DC7 5 DPV TA . ? DPV A 145 . ? 1_555 ? 99 DC7 5 DPV DB . ? DPV A 155 . ? 1_555 ? 100 DC7 5 DPV EB . ? DPV A 156 . ? 1_555 ? 101 DC8 3 DPV K . ? DPV A 110 . ? 1_555 ? 102 DC8 3 DPV TA . ? DPV A 145 . ? 1_555 ? 103 DC8 3 DPV MB . ? DPV A 164 . ? 1_555 ? 104 DC9 2 DPV Z . ? DPV A 125 . ? 1_555 ? 105 DC9 2 DPV MA . ? DPV A 138 . ? 1_555 ? 106 EC1 5 DPV Z . ? DPV A 125 . ? 1_555 ? 107 EC1 5 DPV LA . ? DPV A 137 . ? 1_555 ? 108 EC1 5 DPV FB . ? DPV A 157 . ? 1_555 ? 109 EC1 5 DPV GB . ? DPV A 158 . ? 1_555 ? 110 EC1 5 DPV KB . ? DPV A 162 . ? 1_555 ? 111 EC2 2 DPV FB . ? DPV A 157 . ? 1_555 ? 112 EC2 2 DPV KB . ? DPV A 162 . ? 1_555 ? 113 EC3 3 5CW A 4 ? 5CW A 4 . ? 1_555 ? 114 EC3 3 DPV AB . ? DPV A 152 . ? 1_555 ? 115 EC3 3 DPV BB . ? DPV A 153 . ? 1_555 ? 116 EC4 4 DPV R . ? DPV A 117 . ? 1_555 ? 117 EC4 4 DPV BA . ? DPV A 127 . ? 1_555 ? 118 EC4 4 DPV QA . ? DPV A 142 . ? 1_555 ? 119 EC4 4 DPV JB . ? DPV A 161 . ? 1_555 ? 120 EC5 5 DPV P . ? DPV A 115 . ? 1_555 ? 121 EC5 5 DPV BA . ? DPV A 127 . ? 1_555 ? 122 EC5 5 DPV PA . ? DPV A 141 . ? 1_555 ? 123 EC5 5 DPV IB . ? DPV A 160 . ? 1_555 ? 124 EC5 5 DPV JB . ? DPV A 161 . ? 1_555 ? 125 EC6 2 DPV U . ? DPV A 120 . ? 1_555 ? 126 EC6 2 DPV SA . ? DPV A 144 . ? 1_555 ? 127 EC7 3 DPV U . ? DPV A 120 . ? 1_555 ? 128 EC7 3 DPV HA . ? DPV A 133 . ? 1_555 ? 129 EC7 3 DPV RA . ? DPV A 143 . ? 1_555 ? 130 EC8 4 DPV H . ? DPV A 107 . ? 1_555 ? 131 EC8 4 DPV J . ? DPV A 109 . ? 1_555 ? 132 EC8 4 DPV JA . ? DPV A 135 . ? 1_555 ? 133 EC8 4 DPV KA . ? DPV A 136 . ? 1_555 ? 134 EC9 3 DPV X . ? DPV A 123 . ? 1_555 ? 135 EC9 3 DPV IB . ? DPV A 160 . ? 1_555 ? 136 EC9 3 DPV NB . ? DPV A 165 . ? 1_555 ? 137 FC1 2 DPV O . ? DPV A 114 . ? 1_555 ? 138 FC1 2 DPV R . ? DPV A 117 . ? 1_555 ? 139 FC2 2 DPV O . ? DPV A 114 . ? 1_555 ? 140 FC2 2 DPV AA . ? DPV A 126 . ? 1_555 ? 141 FC3 1 DPV R . ? DPV A 117 . ? 1_555 ? 142 FC4 1 DPV KB . ? DPV A 162 . ? 1_555 ? 143 FC5 2 DPV B . ? DPV A 101 . ? 1_555 ? 144 FC5 2 DPV BA . ? DPV A 127 . ? 1_555 ? 145 FC6 2 DPV OA . ? DPV A 140 . ? 1_555 ? 146 FC6 2 DPV BB . ? DPV A 153 . ? 1_555 ? 147 FC7 4 5CW A 4 ? 5CW A 4 . ? 1_555 ? 148 FC7 4 DPV G . ? DPV A 106 . ? 1_555 ? 149 FC7 4 DPV OA . ? DPV A 140 . ? 1_555 ? 150 FC7 4 DPV AB . ? DPV A 152 . ? 1_555 ? 151 FC8 2 VAL A 1 ? VAL A 1 . ? 1_555 ? 152 FC8 2 DPV IA . ? DPV A 134 . ? 1_555 ? 153 FC9 3 DPV L . ? DPV A 111 . ? 1_555 ? 154 FC9 3 DPV JA . ? DPV A 135 . ? 1_555 ? 155 FC9 3 DPV EB . ? DPV A 156 . ? 1_555 ? 156 GC1 2 DPV JA . ? DPV A 135 . ? 1_555 ? 157 GC1 2 DPV DB . ? DPV A 155 . ? 1_555 ? 158 GC2 3 DPV MA . ? DPV A 138 . ? 1_555 ? 159 GC2 3 DPV NA . ? DPV A 139 . ? 1_555 ? 160 GC2 3 DPV KB . ? DPV A 162 . ? 1_555 ? 161 GC3 3 DPV M . ? DPV A 112 . ? 1_555 ? 162 GC3 3 DPV Y . ? DPV A 124 . ? 1_555 ? 163 GC3 3 DPV MA . ? DPV A 138 . ? 1_555 ? 164 GC4 1 DPV HA . ? DPV A 133 . ? 1_555 ? 165 GC5 3 DPV QA . ? DPV A 142 . ? 1_555 ? 166 GC5 3 DPV UA . ? DPV A 146 . ? 1_555 ? 167 GC5 3 DPV NB . ? DPV A 165 . ? 1_555 ? 168 GC6 5 DPV P . ? DPV A 115 . ? 1_555 ? 169 GC6 5 DPV Q . ? DPV A 116 . ? 1_555 ? 170 GC6 5 DPV R . ? DPV A 117 . ? 1_555 ? 171 GC6 5 DPV PA . ? DPV A 141 . ? 1_555 ? 172 GC6 5 DPV QA . ? DPV A 142 . ? 1_555 ? 173 GC7 4 DPV MA . ? DPV A 138 . ? 1_555 ? 174 GC7 4 DPV NA . ? DPV A 139 . ? 1_555 ? 175 GC7 4 DPV YA . ? DPV A 150 . ? 1_555 ? 176 GC7 4 DPV FB . ? DPV A 157 . ? 1_555 ? 177 GC8 1 DPV E . ? DPV A 104 . ? 1_555 ? 178 GC9 4 DPV K . ? DPV A 110 . ? 1_555 ? 179 GC9 4 DPV X . ? DPV A 123 . ? 1_555 ? 180 GC9 4 DPV Z . ? DPV A 125 . ? 1_555 ? 181 GC9 4 DPV KA . ? DPV A 136 . ? 1_555 ? 182 HC1 2 DPV UA . ? DPV A 146 . ? 1_555 ? 183 HC1 2 DPV IB . ? DPV A 160 . ? 1_555 ? # _atom_sites.entry_id 2MH5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 DBU 2 2 2 DBU DBU A . n A 1 3 DAL 3 3 3 DAL DAL A . n A 1 4 5CW 4 4 4 5CW 5CW A . n A 1 5 DHA 5 5 5 DHA DHA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 DBB 8 8 8 DBB DBB A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 DAL 13 13 13 DAL DAL A . n A 1 14 HYP 14 14 14 HYP HYP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 DAL 18 18 18 DAL DAL A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 DAL 21 21 21 DAL DAL A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 TEE 24 24 24 TEE TEE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DPV 1 101 101 DPV DPV A . C 2 DPV 1 102 102 DPV DPV A . D 2 DPV 1 103 103 DPV DPV A . E 2 DPV 1 104 104 DPV DPV A . F 2 DPV 1 105 105 DPV DPV A . G 2 DPV 1 106 106 DPV DPV A . H 2 DPV 1 107 107 DPV DPV A . I 2 DPV 1 108 108 DPV DPV A . J 2 DPV 1 109 109 DPV DPV A . K 2 DPV 1 110 110 DPV DPV A . L 2 DPV 1 111 111 DPV DPV A . M 2 DPV 1 112 112 DPV DPV A . N 2 DPV 1 113 113 DPV DPV A . O 2 DPV 1 114 114 DPV DPV A . P 2 DPV 1 115 115 DPV DPV A . Q 2 DPV 1 116 116 DPV DPV A . R 2 DPV 1 117 117 DPV DPV A . S 2 DPV 1 118 118 DPV DPV A . T 2 DPV 1 119 119 DPV DPV A . U 2 DPV 1 120 120 DPV DPV A . V 2 DPV 1 121 121 DPV DPV A . W 2 DPV 1 122 122 DPV DPV A . X 2 DPV 1 123 123 DPV DPV A . Y 2 DPV 1 124 124 DPV DPV A . Z 2 DPV 1 125 125 DPV DPV A . AA 2 DPV 1 126 126 DPV DPV A . BA 2 DPV 1 127 127 DPV DPV A . CA 2 DPV 1 128 128 DPV DPV A . DA 2 DPV 1 129 129 DPV DPV A . EA 2 DPV 1 130 130 DPV DPV A . FA 2 DPV 1 131 131 DPV DPV A . GA 2 DPV 1 132 132 DPV DPV A . HA 2 DPV 1 133 133 DPV DPV A . IA 2 DPV 1 134 134 DPV DPV A . JA 2 DPV 1 135 135 DPV DPV A . KA 2 DPV 1 136 136 DPV DPV A . LA 2 DPV 1 137 137 DPV DPV A . MA 2 DPV 1 138 138 DPV DPV A . NA 2 DPV 1 139 139 DPV DPV A . OA 2 DPV 1 140 140 DPV DPV A . PA 2 DPV 1 141 141 DPV DPV A . QA 2 DPV 1 142 142 DPV DPV A . RA 2 DPV 1 143 143 DPV DPV A . SA 2 DPV 1 144 144 DPV DPV A . TA 2 DPV 1 145 145 DPV DPV A . UA 2 DPV 1 146 146 DPV DPV A . VA 2 DPV 1 147 147 DPV DPV A . WA 2 DPV 1 148 148 DPV DPV A . XA 2 DPV 1 149 149 DPV DPV A . YA 2 DPV 1 150 150 DPV DPV A . ZA 2 DPV 1 151 151 DPV DPV A . AB 2 DPV 1 152 152 DPV DPV A . BB 2 DPV 1 153 153 DPV DPV A . CB 2 DPV 1 154 154 DPV DPV A . DB 2 DPV 1 155 155 DPV DPV A . EB 2 DPV 1 156 156 DPV DPV A . FB 2 DPV 1 157 157 DPV DPV A . GB 2 DPV 1 158 158 DPV DPV A . HB 2 DPV 1 159 159 DPV DPV A . IB 2 DPV 1 160 160 DPV DPV A . JB 2 DPV 1 161 161 DPV DPV A . KB 2 DPV 1 162 162 DPV DPV A . LB 2 DPV 1 163 163 DPV DPV A . MB 2 DPV 1 164 164 DPV DPV A . NB 2 DPV 1 165 165 DPV DPV A . # _pdbx_molecule_features.prd_id PRD_001219 _pdbx_molecule_features.name 'Lantibiotic 107891' _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;NAI-107 IS A TETRACYCLIC PEPTIDE. POST TRANSLATIONAL MATURATION OF LANTIBIOTICS INVOLVES THE ENZYMIC CONVERSION OF THR, AND SER INTO DEHYDRATED AA AND THE FORMATION OF THIOETHER BONDS WITH CYSTEINE. THE CARBOXY-TERMINAL BETA-METHYLLANTHIONINE UNDERGOES DECARBOXYLATION. THIOETHER BONDS WITH CYSTEINE RESULT IN FOUR RINGS. THIS IS FOLLOWED BY MEMBRANE TRANSLOCATION AND CLEAVAGE OF THE MODIFIED PRECURSOR. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001219 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DBU 2 A DBU 2 ? THR 'POST-TRANSLATIONAL MODIFICATION' 2 A DAL 3 A DAL 3 ? SER 'POST-TRANSLATIONAL MODIFICATION' 3 A 5CW 4 A 5CW 4 ? TRP 'POST-TRANSLATIONAL MODIFICATION' 4 A DHA 5 A DHA 5 ? SER 'POST-TRANSLATIONAL MODIFICATION' 5 A DAL 13 A DAL 13 ? SER 'POST-TRANSLATIONAL MODIFICATION' 6 A DAL 18 A DAL 18 ? SER 'POST-TRANSLATIONAL MODIFICATION' 7 A DAL 21 A DAL 21 ? SER 'POST-TRANSLATIONAL MODIFICATION' 8 A TEE 24 A TEE 24 ? CYS 'POST-TRANSLATIONAL MODIFICATION' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list ;A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-05 2 'Structure model' 1 1 2014-04-02 3 'Structure model' 1 2 2014-05-14 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 4 'Structure model' '_struct_ref_seq_dif.details' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_entry_details.entry_id 2MH5 _pdbx_entry_details.compound_details ;NAI-107 (LANTIBIOTIC 107891) IS A GLOBULAR TYPE B LANTIBIOTIC. THE LANTIBIOTICS ARE CHARACTERIZED BY THIOETHER AMINO ACIDS LANTHIONINE AND/OR METHYLLANTHIONINE. HERE, NAI-107 IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity_1-1 3.5 ? mM ? 1 dodecylphosphocholine-d38-2 150 ? mM '[U-2H]' 1 'potassium phosphate-3' 10 ? mM ? 1 TSP-d4-4 0.02 ? mM 2,2,3,3-D 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 5CW A 4 ? ? 69.70 -42.02 2 1 CYS A 7 ? ? -90.85 51.68 3 1 PRO A 9 ? ? -22.28 102.20 4 1 THR A 12 ? ? 74.29 139.12 5 1 DAL A 13 ? ? 174.98 62.82 6 1 DAL A 21 ? ? 75.41 -46.50 7 2 DAL A 3 ? ? -5.80 -77.64 8 2 5CW A 4 ? ? 53.24 -35.69 9 2 DAL A 18 ? ? 154.38 -51.86 10 2 ASN A 19 ? ? 54.26 -140.14 11 3 DAL A 3 ? ? -35.77 62.50 12 3 LEU A 6 ? ? -107.75 54.23 13 3 PRO A 9 ? ? -8.25 95.27 14 3 DAL A 13 ? ? -178.76 57.49 15 4 DAL A 3 ? ? -33.37 70.63 16 4 CYS A 7 ? ? -107.66 -95.12 17 4 DBB A 8 ? ? -83.53 -35.32 18 4 THR A 12 ? ? -145.95 -146.21 19 4 CYS A 20 ? ? 64.07 65.68 20 5 DAL A 3 ? ? 49.16 -106.33 21 5 5CW A 4 ? ? 56.24 -65.64 22 5 CYS A 7 ? ? -92.44 31.86 23 5 CYS A 11 ? ? -96.40 -94.77 24 5 THR A 12 ? ? -141.45 -60.42 25 5 DAL A 13 ? ? 120.99 56.53 26 5 CYS A 20 ? ? -90.41 32.62 27 5 PHE A 22 ? ? 65.74 -48.56 28 6 DAL A 3 ? ? 57.50 -3.87 29 6 5CW A 4 ? ? -63.15 61.43 30 6 PRO A 9 ? ? -59.05 104.53 31 6 DAL A 13 ? ? -55.57 -109.80 32 6 DAL A 18 ? ? 163.28 -36.78 33 6 ASN A 19 ? ? -71.45 33.58 34 7 LEU A 6 ? ? -150.47 -37.57 35 7 DBB A 8 ? ? 148.15 -59.74 36 7 DAL A 21 ? ? -38.37 59.97 37 7 CYS A 23 ? ? 72.92 -45.30 38 8 DAL A 3 ? ? 60.65 -90.72 39 8 5CW A 4 ? ? 66.07 -58.42 40 8 PRO A 9 ? ? -21.13 99.53 41 8 DAL A 21 ? ? -39.13 -179.17 42 8 PHE A 22 ? ? 66.22 -61.26 43 9 DAL A 13 ? ? 154.19 15.99 44 9 DAL A 21 ? ? -40.43 -27.07 45 10 DAL A 3 ? ? 58.74 -69.01 46 10 5CW A 4 ? ? 63.80 -48.21 47 10 CYS A 11 ? ? -126.48 -159.66 48 10 ASN A 19 ? ? 61.64 -153.20 49 11 DAL A 3 ? ? -30.37 77.14 50 11 PRO A 9 ? ? -58.59 107.47 51 11 THR A 12 ? ? -162.41 -74.90 52 11 DAL A 21 ? ? 64.84 -45.58 53 11 CYS A 23 ? ? 69.53 -58.05 54 12 DAL A 3 ? ? -42.88 96.68 55 12 LEU A 6 ? ? -160.34 -36.53 56 12 PRO A 9 ? ? -10.55 90.80 57 12 THR A 12 ? ? -138.47 -67.42 58 13 DAL A 3 ? ? -53.67 77.88 59 13 LEU A 6 ? ? -174.16 -40.41 60 13 PRO A 9 ? ? -23.77 120.16 61 13 DAL A 13 ? ? -64.24 -166.03 62 13 DAL A 21 ? ? 65.55 -41.34 63 14 DAL A 3 ? ? 169.15 38.15 64 14 CYS A 7 ? ? -117.94 55.15 65 14 ASN A 19 ? ? 70.09 -46.32 66 14 DAL A 21 ? ? -41.64 -22.90 67 15 DAL A 3 ? ? 59.65 1.81 68 15 THR A 12 ? ? -158.64 -68.81 69 15 DAL A 18 ? ? -65.85 69.98 70 15 CYS A 20 ? ? 13.11 74.60 71 16 PRO A 9 ? ? 6.93 -64.97 72 16 ASN A 19 ? ? 62.89 -0.28 73 16 CYS A 20 ? ? -82.12 45.88 74 16 DAL A 21 ? ? 63.00 -41.09 75 17 DAL A 3 ? ? -60.52 56.94 76 17 LEU A 6 ? ? -167.83 46.19 77 17 CYS A 7 ? ? -155.81 -33.26 78 17 DBB A 8 ? ? 154.89 42.87 79 17 CYS A 11 ? ? -85.75 -94.99 80 17 DAL A 13 ? ? -31.59 -56.85 81 17 DAL A 18 ? ? -69.10 14.17 82 17 DAL A 21 ? ? -42.58 -27.23 83 18 DBB A 8 ? ? 116.67 -57.41 84 18 DAL A 13 ? ? -67.75 -160.27 85 18 CYS A 20 ? ? -146.31 17.53 86 18 PHE A 22 ? ? 68.72 -49.72 87 19 DAL A 3 ? ? -30.38 77.18 88 19 PRO A 9 ? ? -58.60 107.47 89 19 THR A 12 ? ? -162.47 -74.87 90 19 DAL A 21 ? ? 64.79 -45.62 91 19 CYS A 23 ? ? 69.45 -58.02 92 20 DAL A 3 ? ? 172.86 47.41 93 20 CYS A 7 ? ? -106.24 63.08 94 20 PRO A 9 ? ? -15.92 97.99 95 20 ASN A 19 ? ? 45.78 -68.72 96 20 PHE A 22 ? ? -47.62 -75.30 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 13 _pdbx_validate_peptide_omega.auth_comp_id_1 CYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 23 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 TEE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 24 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -147.92 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'dodecyl 2-(trimethylammonio)ethyl phosphate' _pdbx_entity_nonpoly.comp_id DPV #