HEADER METAL BINDING PROTEIN 22-NOV-13 2MHH TITLE SOLUTION STRUCTURE OF A EF-HAND DOMAIN FROM SEA URCHIN POLYCYSTIN-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCYSTIC KIDNEY DISEASE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STRONGYLOCENTROTUS PURPURATUS; SOURCE 3 ORGANISM_COMMON: PURPLE URCHIN; SOURCE 4 ORGANISM_TAXID: 7668; SOURCE 5 GENE: PKD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS EF-HAND, CHANNEL, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.Y.KUO,C.KEELER,R.CORBIN,A.CELIC,E.T.PETRI,M.E.HODSDON,B.E.EHRLICH REVDAT 4 15-MAY-24 2MHH 1 REMARK REVDAT 3 14-JUN-23 2MHH 1 REMARK SEQADV REVDAT 2 05-NOV-14 2MHH 1 JRNL REVDAT 1 08-OCT-14 2MHH 0 JRNL AUTH I.Y.KUO,C.KEELER,R.CORBIN,A.CELIC,E.T.PETRI,M.E.HODSDON, JRNL AUTH 2 B.E.EHRLICH JRNL TITL THE NUMBER AND LOCATION OF EF HAND MOTIFS DICTATES THE JRNL TITL 2 CALCIUM DEPENDENCE OF POLYCYSTIN-2 FUNCTION. JRNL REF FASEB J. V. 28 2332 2014 JRNL REFN ISSN 0892-6638 JRNL PMID 24558196 JRNL DOI 10.1096/FJ.13-247106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMR), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000103621. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.38 REMARK 210 IONIC STRENGTH : 0.195 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 25 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 20 MM CALCIUM REMARK 210 CHLORIDE, 5 MM TCEP, .05 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D HN(CA)CO; 3D HCACO; 3D C(CO) REMARK 210 NH; 3D 1H-15N TOCSY; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 33 H HIS A 37 1.56 REMARK 500 O ILE A 28 H GLN A 32 1.59 REMARK 500 O ALA A 38 N ALA A 40 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 14 -88.64 51.67 REMARK 500 1 VAL A 15 115.00 -165.65 REMARK 500 1 ASP A 39 54.90 4.47 REMARK 500 1 ALA A 42 53.08 28.99 REMARK 500 1 ALA A 70 -38.34 -38.73 REMARK 500 1 LYS A 71 -7.25 -54.49 REMARK 500 1 GLU A 105 173.39 -58.28 REMARK 500 1 LEU A 106 -55.26 -170.18 REMARK 500 2 HIS A 37 23.59 -77.54 REMARK 500 2 ASP A 39 42.25 6.70 REMARK 500 2 CYS A 57 -8.31 -53.50 REMARK 500 2 ASP A 73 67.05 -61.23 REMARK 500 2 ARG A 78 15.44 56.71 REMARK 500 2 ALA A 104 -172.49 51.62 REMARK 500 2 GLU A 105 -82.54 22.25 REMARK 500 2 LEU A 106 85.84 84.85 REMARK 500 3 VAL A 15 62.80 -164.62 REMARK 500 3 ARG A 17 100.23 -164.91 REMARK 500 3 SER A 19 -173.00 -66.18 REMARK 500 3 HIS A 20 -43.59 70.86 REMARK 500 3 HIS A 37 24.54 -78.56 REMARK 500 3 ASP A 39 51.20 1.78 REMARK 500 3 ALA A 70 -19.45 -48.44 REMARK 500 3 ALA A 82 -17.11 -47.59 REMARK 500 3 LEU A 103 64.06 -172.29 REMARK 500 3 ALA A 104 -151.62 23.90 REMARK 500 3 GLU A 105 -3.57 -168.77 REMARK 500 3 LEU A 106 62.48 -168.24 REMARK 500 4 HIS A 20 -83.09 -165.71 REMARK 500 4 ASP A 39 49.85 7.40 REMARK 500 4 ASP A 73 62.49 -63.00 REMARK 500 4 ASP A 77 14.80 -69.75 REMARK 500 4 ARG A 78 10.06 54.41 REMARK 500 4 ALA A 104 149.46 -39.66 REMARK 500 4 GLU A 105 24.65 -171.41 REMARK 500 5 VAL A 15 103.62 -160.79 REMARK 500 5 SER A 19 79.16 -167.68 REMARK 500 5 HIS A 20 13.02 -167.46 REMARK 500 5 ASP A 39 51.83 5.83 REMARK 500 5 ALA A 70 -18.46 -48.52 REMARK 500 5 ASP A 73 36.75 7.07 REMARK 500 5 ASP A 81 -170.50 -62.32 REMARK 500 5 LEU A 103 73.78 179.62 REMARK 500 5 LEU A 106 41.60 -102.20 REMARK 500 6 SER A 19 21.31 -168.43 REMARK 500 6 HIS A 37 23.84 -79.42 REMARK 500 6 ASP A 39 47.46 2.89 REMARK 500 6 ASP A 73 71.55 -100.69 REMARK 500 6 ASP A 77 24.15 -70.60 REMARK 500 6 ASP A 81 -167.21 -102.73 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19633 RELATED DB: BMRB DBREF 2MHH A 24 107 UNP Q7Z2B5 Q7Z2B5_STRPU 655 738 SEQADV 2MHH GLY A 12 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH GLY A 13 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH LEU A 14 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH VAL A 15 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH PRO A 16 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH ARG A 17 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH GLY A 18 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH SER A 19 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH HIS A 20 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH MET A 21 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH ALA A 22 UNP Q7Z2B5 EXPRESSION TAG SEQADV 2MHH SER A 23 UNP Q7Z2B5 EXPRESSION TAG SEQRES 1 A 96 GLY GLY LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS SEQRES 2 A 96 ARG ASP LYS ILE ALA ASP ILE GLN GLU ALA LEU ALA HIS SEQRES 3 A 96 ALA ASP ALA ASN ALA ASP GLN HIS LEU ASP PHE ASP GLU SEQRES 4 A 96 TRP ARG GLN GLU LEU LYS CYS ARG GLY HIS ALA ASP ALA SEQRES 5 A 96 ASP ILE GLU ALA VAL PHE ALA LYS TYR ASP VAL ASP GLY SEQRES 6 A 96 ASP ARG VAL LEU ASP ALA GLU GLU GLN MET LYS MET ALA SEQRES 7 A 96 HIS ASP LEU GLU GLY GLN LYS SER ASP LEU ASN ASN GLN SEQRES 8 A 96 LEU ALA GLU LEU GLU HELIX 1 1 SER A 19 HIS A 37 1 19 HELIX 2 2 ASP A 47 CYS A 57 1 11 HELIX 3 3 ALA A 63 LYS A 71 1 9 HELIX 4 4 ASP A 81 ALA A 104 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1