HEADER ELECTRON TRANSPORT 26-NOV-13 2MHM TITLE SOLUTION STRUCTURE OF CYTOCHROME C Y67H COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: CYC1, J1653, YJR048W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PBTR2 KEYWDS Y67H, HYDROGEN-BOND, H2O2, GUAIACOL, PEROXIDATION, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.X.LAN,Z.H.WANG,Z.Z.YANG,T.L.YING,H.M.WU,X.S.TAN,C.Y.CAO,Z.X.HUANG REVDAT 1 29-OCT-14 2MHM 0 JRNL AUTH W.X.LAN,Z.H.WANG,Z.Z.YANG,T.L.YING,X.ZHANG,X.S.TAN,M.LIU, JRNL AUTH 2 C.Y.CAO,Z.X.HUANG JRNL TITL STRUCTURAL BASIS FOR CYTOCHROME C Y67H MUTANT TO FUNCTION AS JRNL TITL 2 A PEROXIDASE JRNL REF PLOS ONE V. 9 07305 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25210769 JRNL DOI 10.1371/JOURNAL.PONE.0107305 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, X-PLOR REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB103626. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM CYTC C Y67H-1, 90% H2O, 10% REMARK 210 D2O; 1 MM CYTC C Y67H-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY ,DQCOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NMR REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 38 HE21 GLN A 42 1.22 REMARK 500 HD1 HIS A 18 O PRO A 30 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A -1 96.43 -62.88 REMARK 500 1 ARG A 13 59.38 -150.28 REMARK 500 1 CYS A 14 -51.98 -171.18 REMARK 500 1 VAL A 20 -0.23 54.32 REMARK 500 1 VAL A 28 -84.77 53.73 REMARK 500 1 HIS A 33 95.24 -166.56 REMARK 500 1 GLU A 44 17.31 43.32 REMARK 500 1 ASN A 56 118.72 50.91 REMARK 500 1 ASN A 70 68.73 -152.87 REMARK 500 1 ALA A 72 -78.87 -70.91 REMARK 500 2 ALA A -1 -22.58 -39.95 REMARK 500 2 ALA A 3 -128.23 -80.77 REMARK 500 2 LYS A 4 -84.19 57.64 REMARK 500 2 ARG A 13 28.71 -147.02 REMARK 500 2 CYS A 14 -24.08 -171.08 REMARK 500 2 PRO A 25 -156.04 -74.26 REMARK 500 2 LYS A 27 -125.07 -103.78 REMARK 500 2 HIS A 33 90.80 -172.19 REMARK 500 2 ALA A 51 -70.32 -50.25 REMARK 500 3 ALA A -1 98.73 -42.02 REMARK 500 3 ALA A 3 -141.58 51.31 REMARK 500 3 LYS A 4 -80.50 55.61 REMARK 500 3 ARG A 13 59.30 -150.62 REMARK 500 3 CYS A 14 -50.29 -171.17 REMARK 500 3 VAL A 20 -0.75 64.02 REMARK 500 3 PRO A 25 -159.95 -73.78 REMARK 500 3 LYS A 27 -125.94 -101.37 REMARK 500 3 HIS A 33 98.26 -171.71 REMARK 500 3 GLU A 44 94.25 38.05 REMARK 500 3 ASN A 70 69.04 -167.56 REMARK 500 4 ALA A -1 95.64 -63.06 REMARK 500 4 ARG A 13 55.96 -148.32 REMARK 500 4 CYS A 14 -52.91 -173.90 REMARK 500 4 VAL A 20 21.48 39.70 REMARK 500 4 PRO A 25 -153.77 -77.16 REMARK 500 4 LYS A 27 -130.09 -106.48 REMARK 500 4 HIS A 33 97.25 -174.84 REMARK 500 4 GLU A 44 -16.73 57.12 REMARK 500 4 ALA A 51 -75.96 -52.33 REMARK 500 4 ASN A 70 67.99 -152.92 REMARK 500 4 ALA A 72 -78.75 -71.03 REMARK 500 4 ALA A 101 66.62 154.01 REMARK 500 4 THR A 102 -2.23 61.32 REMARK 500 5 ALA A 3 -165.84 173.90 REMARK 500 5 ARG A 13 61.97 -153.80 REMARK 500 5 CYS A 14 -45.23 -171.48 REMARK 500 5 VAL A 28 -76.44 -146.31 REMARK 500 5 PRO A 30 1.69 -58.20 REMARK 500 5 ASN A 31 122.09 66.56 REMARK 500 5 HIS A 33 94.61 -167.32 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 90.8 REMARK 620 3 HEC A 201 NB 89.2 90.0 REMARK 620 4 HEC A 201 NC 89.2 179.8 90.2 REMARK 620 5 HEC A 201 ND 90.8 89.9 179.8 90.0 REMARK 620 6 MET A 80 SD 178.3 90.8 90.2 89.3 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19638 RELATED DB: BMRB DBREF 2MHM A -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 2MHM HIS A 67 UNP P00044 TYR 73 ENGINEERED MUTATION SEQADV 2MHM ALA A 72 UNP P00044 LYS 78 CONFLICT SEQADV 2MHM THR A 102 UNP P00044 CYS 108 CONFLICT SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU HIS LEU THR ASN PRO ALA LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU HET HEC A 201 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 1 SER A 2 CYS A 14 1 13 HELIX 2 2 THR A 49 ASN A 56 1 8 HELIX 3 3 ASP A 60 ASN A 70 1 11 HELIX 4 4 ASN A 70 ILE A 75 1 6 HELIX 5 5 LYS A 87 GLU A 103 1 17 SHEET 1 A 2 ARG A 38 HIS A 39 0 SHEET 2 A 2 LEU A 58 TRP A 59 -1 O TRP A 59 N ARG A 38 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.10 LINK SD MET A 80 FE HEC A 201 1555 1555 2.43 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.81 SITE 1 AC1 17 PHE A 10 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 17 VAL A 28 GLY A 29 PRO A 30 ILE A 35 SITE 3 AC1 17 SER A 40 SER A 47 TYR A 48 THR A 49 SITE 4 AC1 17 TRP A 59 LEU A 68 LYS A 79 MET A 80 SITE 5 AC1 17 LEU A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1