data_2MHZ # _entry.id 2MHZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2MHZ RCSB RCSB103636 BMRB 19661 WWPDB D_1000103636 # _pdbx_database_related.db_id 19661 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MHZ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-05 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kowal, E.A.' 1 'Seneviratne, U.' 2 'Wickramaratne, S.' 3 'Doherty, K.E.' 4 'Cao, X.' 5 'Tretyakova, N.' 6 'Stone, M.P.' 7 # _citation.id primary _citation.title ;Structures of Exocyclic R,R- and S,S-N(6),N(6)-(2,3-Dihydroxybutan-1,4-diyl)-2'-Deoxyadenosine Adducts Induced by 1,2,3,4-Diepoxybutane. ; _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 27 _citation.page_first 805 _citation.page_last 817 _citation.year 2014 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24741991 _citation.pdbx_database_id_DOI 10.1021/tx400472p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kowal, E.A.' 1 primary 'Seneviratne, U.' 2 primary 'Wickramaratne, S.' 3 primary 'Doherty, K.E.' 4 primary 'Cao, X.' 5 primary 'Tretyakova, N.' 6 primary 'Stone, M.P.' 7 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3'" 3504.368 1 ? ? ? ? 2 polymer syn "5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'" 3291.145 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DG)(DA)(DC)(SDE)(DA)(DG)(DA)(DA)(DG)' CGGACXAGAAG A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DC)(DG)' CTTCTTGTCCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 SDE n 1 7 DA n 1 8 DG n 1 9 DA n 1 10 DA n 1 11 DG n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DG n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2MHZ 2MHZ 1 1 'CGGAC(SDE)AGAAG' ? 2 PDB 2MHZ 2MHZ 2 1 CTTCTTGTCCG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MHZ A 1 ? 11 ? 2MHZ 1 ? 11 ? 1 11 2 2 2MHZ B 1 ? 11 ? 2MHZ 12 ? 22 ? 12 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 SDE 'DNA linking' n "(S,S)-N6,N6-(2,3-dihydroxy-1,4-butadiyl)-2'-deoxyadenosine-5'-monophosphate" ? 'C14 H22 N5 O8 P' 419.327 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D DQF-COSY' 2 4 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 100 7 ambient ? 288 K 2 100 7 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.4 mM 5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3', 0.4 mM 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3', 100 mM sodium chloride, 50 uM EDTA, 10 mM sodium phosphate, 100% D2O ; 1 '100% D2O' ;0.4 mM 5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3', 0.4 mM 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3', 100 mM sodium chloride, 50 uM EDTA, 10 mM sodium phosphate, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker Avance 1 'Bruker Avance' 500 Bruker Avance 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MHZ _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.conformers_calculated_total_number 8 _pdbx_nmr_ensemble.conformers_submitted_total_number 8 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MHZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MHZ _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'structure solution' AMBER ? 1 'Brandan A. Borgias, Paul D. Thomas, He Liu, Anil Kumar' 'data analysis' CORMA ? 2 'Brandan A. Borgias, Paul D. Thomas, He Liu, Anil Kumar, Marco Tonelli' 'conversion of intensities to distance restraints' MARDIGRAS ? 3 Goddard 'chemical shift assignment' SPARKY ? 4 Goddard 'peak picking' SPARKY ? 5 Goddard 'chemical shift calculation' SPARKY ? 6 'Bruker Biospin' collection TOPSPIN ? 7 'Bruker Biospin' processing TOPSPIN ? 8 'Christophe Blanchet, Marco Pasi, Krystyna Zakrzewska, Richard Lavery' 'data analysis' CURVES 'plus web server' 9 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement AMBER ? 10 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MHZ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MHZ _struct.title ;Structure of Exocyclic S,S N6,N6-(2,3-Dihydroxy-1,4-butadiyl)-2'-Deoxyadenosine Adduct Induced by 1,2,3,4-Diepoxybutane in DNA ; _struct.pdbx_descriptor "5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3'" _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MHZ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-form DNA, 11-mer, DEB induced adduct, DHB-dA adduct, n-ras Codon 61 sequence, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A DC 5 "O3'" ? ? ? 1_555 A SDE 6 P ? ? A DC 5 A SDE 6 1_555 ? ? ? ? ? ? ? 1.615 ? covale2 covale ? ? A SDE 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A SDE 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.611 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 10 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 10 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2MHZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 SDE 6 6 6 SDE SDE A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DG 11 11 11 DG DG A . n B 2 1 DC 1 12 12 DC DC B . n B 2 2 DT 2 13 13 DT DT B . n B 2 3 DT 3 14 14 DT DT B . n B 2 4 DC 4 15 15 DC DC B . n B 2 5 DT 5 16 16 DT DT B . n B 2 6 DT 6 17 17 DT DT B . n B 2 7 DG 7 18 18 DG DG B . n B 2 8 DT 8 19 19 DT DT B . n B 2 9 DC 9 20 20 DC DC B . n B 2 10 DC 10 21 21 DC DC B . n B 2 11 DG 11 22 22 DG DG B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SDE _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SDE _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-28 2 'Structure model' 1 1 2014-06-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id "5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3'-1" 0.4 ? mM ? 1 "5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'-2" 0.4 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 EDTA-4 50 ? uM ? 1 'sodium phosphate-5' 10 ? mM ? 1 "5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3'-6" 0.4 ? mM ? 2 "5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'-7" 0.4 ? mM ? 2 'sodium chloride-8' 100 ? mM ? 2 EDTA-9 50 ? uM ? 2 'sodium phosphate-10' 10 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MHZ _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 199 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 96 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 103 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.67 121.90 -5.23 0.70 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.66 108.30 2.36 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.20 108.30 1.90 0.30 N 4 1 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.81 117.00 -3.19 0.50 N 5 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.30 117.70 3.60 0.50 N 6 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.98 118.60 -4.62 0.60 N 7 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.09 108.30 2.79 0.30 N 8 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.59 121.90 -5.31 0.70 N 9 1 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.60 117.00 -3.40 0.50 N 10 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.32 117.70 3.62 0.50 N 11 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.69 118.60 -4.91 0.60 N 12 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.35 108.30 2.05 0.30 N 13 1 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.75 117.00 -3.25 0.50 N 14 1 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.29 117.70 3.59 0.50 N 15 1 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.93 118.60 -4.67 0.60 N 16 1 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.56 117.00 -3.44 0.50 N 17 1 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.38 117.70 3.68 0.50 N 18 1 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.66 118.60 -4.94 0.60 N 19 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.60 108.30 3.30 0.30 N 20 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.43 108.30 3.13 0.30 N 21 1 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.92 121.90 -4.98 0.70 N 22 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.32 108.30 3.02 0.30 N 23 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.87 121.90 -5.03 0.70 N 24 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.08 108.30 2.78 0.30 N 25 1 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.86 121.90 -5.04 0.70 N 26 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.68 108.30 2.38 0.30 N 27 1 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.99 121.90 -4.91 0.70 N 28 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.92 108.30 2.62 0.30 N 29 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.62 121.90 -5.28 0.70 N 30 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.50 108.30 3.20 0.30 N 31 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.63 108.30 2.33 0.30 N 32 2 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.76 117.00 -3.24 0.50 N 33 2 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.30 117.70 3.60 0.50 N 34 2 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.96 118.60 -4.64 0.60 N 35 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.00 108.30 2.70 0.30 N 36 2 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.61 121.90 -5.29 0.70 N 37 2 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.61 117.00 -3.39 0.50 N 38 2 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.57 117.70 3.87 0.50 N 39 2 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.92 118.60 -4.68 0.60 N 40 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.70 108.30 2.40 0.30 N 41 2 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.72 117.00 -3.28 0.50 N 42 2 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.16 117.70 3.46 0.50 N 43 2 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.87 118.60 -4.73 0.60 N 44 2 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.60 117.00 -3.40 0.50 N 45 2 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.43 117.70 3.73 0.50 N 46 2 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.72 118.60 -4.88 0.60 N 47 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.52 108.30 3.22 0.30 N 48 2 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 112.19 108.30 3.89 0.30 N 49 2 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.80 121.90 -5.10 0.70 N 50 2 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.36 108.30 2.06 0.30 N 51 2 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.17 122.90 -3.73 0.60 N 52 2 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.67 108.30 2.37 0.30 N 53 2 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.82 121.90 -5.08 0.70 N 54 2 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.25 108.30 1.95 0.30 N 55 2 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.33 108.30 3.03 0.30 N 56 2 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.83 121.90 -5.07 0.70 N 57 2 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.30 108.30 2.00 0.30 N 58 2 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.01 121.90 -4.89 0.70 N 59 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.22 108.30 1.92 0.30 N 60 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.63 121.90 -5.27 0.70 N 61 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.75 108.30 3.45 0.30 N 62 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.50 108.30 2.20 0.30 N 63 3 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.79 117.00 -3.21 0.50 N 64 3 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.26 117.70 3.56 0.50 N 65 3 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.89 118.60 -4.71 0.60 N 66 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.13 108.30 2.83 0.30 N 67 3 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.53 118.90 3.63 0.60 N 68 3 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.54 121.90 -5.36 0.70 N 69 3 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.50 117.00 -3.50 0.50 N 70 3 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.35 117.70 3.65 0.50 N 71 3 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.75 118.60 -4.85 0.60 N 72 3 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.73 117.00 -3.27 0.50 N 73 3 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.25 117.70 3.55 0.50 N 74 3 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.08 118.60 -4.52 0.60 N 75 3 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.53 117.00 -3.47 0.50 N 76 3 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.46 117.70 3.76 0.50 N 77 3 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.78 118.60 -4.82 0.60 N 78 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.43 108.30 3.13 0.30 N 79 3 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.71 108.30 3.41 0.30 N 80 3 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.83 121.90 -5.07 0.70 N 81 3 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.20 108.30 2.90 0.30 N 82 3 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.89 121.90 -5.01 0.70 N 83 3 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.00 108.30 2.70 0.30 N 84 3 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.77 121.90 -5.13 0.70 N 85 3 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.51 108.30 2.21 0.30 N 86 3 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.99 121.90 -4.91 0.70 N 87 3 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.22 108.30 1.92 0.30 N 88 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.51 121.90 -5.39 0.70 N 89 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.57 108.30 3.27 0.30 N 90 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.67 108.30 2.37 0.30 N 91 4 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.70 117.00 -3.30 0.50 N 92 4 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.20 117.70 3.50 0.50 N 93 4 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.76 118.60 -4.84 0.60 N 94 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.03 108.30 2.73 0.30 N 95 4 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.61 121.90 -5.29 0.70 N 96 4 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.55 117.00 -3.45 0.50 N 97 4 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.66 117.70 3.96 0.50 N 98 4 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.79 118.60 -4.81 0.60 N 99 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.38 108.30 2.08 0.30 N 100 4 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.66 117.00 -3.34 0.50 N 101 4 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.31 117.70 3.61 0.50 N 102 4 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.75 118.60 -4.85 0.60 N 103 4 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.62 117.00 -3.38 0.50 N 104 4 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.45 117.70 3.75 0.50 N 105 4 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.56 118.60 -5.04 0.60 N 106 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.11 108.30 3.81 0.30 N 107 4 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.55 108.30 3.25 0.30 N 108 4 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.85 121.90 -5.05 0.70 N 109 4 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.90 108.30 3.60 0.30 N 110 4 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.82 121.90 -5.08 0.70 N 111 4 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.64 108.30 3.34 0.30 N 112 4 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.80 121.90 -5.10 0.70 N 113 4 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.39 108.30 2.09 0.30 N 114 4 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.05 121.90 -4.85 0.70 N 115 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.43 121.90 -5.47 0.70 N 116 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.78 108.30 3.48 0.30 N 117 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.57 108.30 2.27 0.30 N 118 5 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.79 117.00 -3.21 0.50 N 119 5 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.26 117.70 3.56 0.50 N 120 5 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.14 118.60 -4.46 0.60 N 121 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.33 108.30 3.03 0.30 N 122 5 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.64 118.90 3.74 0.60 N 123 5 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.49 121.90 -5.41 0.70 N 124 5 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.11 108.30 1.81 0.30 N 125 5 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.41 117.00 -3.59 0.50 N 126 5 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.37 117.70 3.67 0.50 N 127 5 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.47 118.60 -5.13 0.60 N 128 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.19 108.30 1.89 0.30 N 129 5 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.71 117.00 -3.29 0.50 N 130 5 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.15 117.70 3.45 0.50 N 131 5 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.61 118.60 -4.99 0.60 N 132 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.31 108.30 3.01 0.30 N 133 5 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.65 117.00 -3.35 0.50 N 134 5 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.52 117.70 3.82 0.50 N 135 5 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.14 118.60 -4.46 0.60 N 136 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.74 108.30 2.44 0.30 N 137 5 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 112.38 108.30 4.08 0.30 N 138 5 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.89 121.90 -5.01 0.70 N 139 5 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.27 122.90 -3.63 0.60 N 140 5 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.71 108.30 2.41 0.30 N 141 5 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.73 121.90 -5.17 0.70 N 142 5 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.27 108.30 2.97 0.30 N 143 5 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.74 121.90 -5.16 0.70 N 144 5 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.74 108.30 2.44 0.30 N 145 5 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.19 121.90 -4.71 0.70 N 146 6 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.57 121.90 -5.33 0.70 N 147 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.28 108.30 2.98 0.30 N 148 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.54 108.30 2.24 0.30 N 149 6 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.73 117.00 -3.27 0.50 N 150 6 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.27 117.70 3.57 0.50 N 151 6 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.72 118.60 -4.88 0.60 N 152 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.99 108.30 2.69 0.30 N 153 6 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.44 121.90 -5.46 0.70 N 154 6 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.65 117.00 -3.35 0.50 N 155 6 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.31 117.70 3.61 0.50 N 156 6 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.75 118.60 -4.85 0.60 N 157 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.23 108.30 1.93 0.30 N 158 6 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.63 117.00 -3.37 0.50 N 159 6 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.20 117.70 3.50 0.50 N 160 6 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.90 118.60 -4.70 0.60 N 161 6 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.62 117.00 -3.38 0.50 N 162 6 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.39 117.70 3.69 0.50 N 163 6 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.76 118.60 -4.84 0.60 N 164 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.05 108.30 3.75 0.30 N 165 6 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.66 108.30 3.36 0.30 N 166 6 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.72 121.90 -5.18 0.70 N 167 6 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.54 108.30 2.24 0.30 N 168 6 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 122.51 118.90 3.61 0.60 N 169 6 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.68 121.90 -5.22 0.70 N 170 6 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.76 108.30 3.46 0.30 N 171 6 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.83 121.90 -5.07 0.70 N 172 6 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.94 121.90 -4.96 0.70 N 173 6 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.45 108.30 2.15 0.30 N 174 7 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.52 118.90 3.62 0.60 N 175 7 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.49 121.90 -5.41 0.70 N 176 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.00 108.30 3.70 0.30 N 177 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.66 108.30 2.36 0.30 N 178 7 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.81 117.00 -3.19 0.50 N 179 7 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.24 117.70 3.54 0.50 N 180 7 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.66 118.60 -4.94 0.60 N 181 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.12 108.30 2.82 0.30 N 182 7 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.54 118.90 3.64 0.60 N 183 7 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.49 121.90 -5.41 0.70 N 184 7 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.42 117.00 -3.58 0.50 N 185 7 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.49 117.70 3.79 0.50 N 186 7 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.50 118.60 -5.10 0.60 N 187 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.75 108.30 2.45 0.30 N 188 7 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.33 108.30 2.03 0.30 N 189 7 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.73 117.00 -3.27 0.50 N 190 7 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.42 117.70 3.72 0.50 N 191 7 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.98 118.60 -4.62 0.60 N 192 7 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.59 117.00 -3.41 0.50 N 193 7 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.39 117.70 3.69 0.50 N 194 7 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.65 118.60 -4.95 0.60 N 195 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.54 108.30 4.24 0.30 N 196 7 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.65 108.30 3.35 0.30 N 197 7 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.85 121.90 -5.05 0.70 N 198 7 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 110.12 108.30 1.82 0.30 N 199 7 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.17 122.90 -3.73 0.60 N 200 7 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.32 108.30 3.02 0.30 N 201 7 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.90 121.90 -5.00 0.70 N 202 7 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 110.94 108.30 2.64 0.30 N 203 7 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.94 121.90 -4.96 0.70 N 204 7 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.20 108.30 1.90 0.30 N 205 7 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.18 121.90 -4.72 0.70 N 206 7 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.23 108.30 1.93 0.30 N 207 8 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.54 121.90 -5.36 0.70 N 208 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.79 108.30 3.49 0.30 N 209 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.72 108.30 2.42 0.30 N 210 8 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.76 117.00 -3.24 0.50 N 211 8 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.21 117.70 3.51 0.50 N 212 8 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.75 118.60 -4.85 0.60 N 213 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.42 108.30 3.12 0.30 N 214 8 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.56 121.90 -5.34 0.70 N 215 8 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.63 117.00 -3.37 0.50 N 216 8 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.47 117.70 3.77 0.50 N 217 8 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.67 118.60 -4.93 0.60 N 218 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.93 108.30 2.63 0.30 N 219 8 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.68 117.00 -3.32 0.50 N 220 8 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.18 117.70 3.48 0.50 N 221 8 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.89 118.60 -4.71 0.60 N 222 8 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.57 117.00 -3.43 0.50 N 223 8 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.43 117.70 3.73 0.50 N 224 8 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 113.58 118.60 -5.02 0.60 N 225 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.04 108.30 3.74 0.30 N 226 8 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.64 108.30 3.34 0.30 N 227 8 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.93 121.90 -4.97 0.70 N 228 8 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.44 108.30 2.14 0.30 N 229 8 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.15 122.90 -3.75 0.60 N 230 8 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.46 108.30 3.16 0.30 N 231 8 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 116.80 121.90 -5.10 0.70 N 232 8 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.13 108.30 1.83 0.30 N 233 8 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.12 108.30 2.82 0.30 N 234 8 N3 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 116.81 121.90 -5.09 0.70 N 235 8 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.13 121.90 -4.77 0.70 N 236 8 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.37 108.30 2.07 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT B 17 ? ? 0.079 'SIDE CHAIN' 2 2 DT B 17 ? ? 0.079 'SIDE CHAIN' 3 3 DT B 17 ? ? 0.081 'SIDE CHAIN' 4 4 DT B 17 ? ? 0.076 'SIDE CHAIN' 5 5 DT B 16 ? ? 0.074 'SIDE CHAIN' 6 5 DT B 17 ? ? 0.099 'SIDE CHAIN' 7 6 DT B 17 ? ? 0.073 'SIDE CHAIN' 8 7 DT B 17 ? ? 0.066 'SIDE CHAIN' 9 8 DT B 17 ? ? 0.071 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MHZ 'double helix' 2MHZ 'b-form double helix' 2MHZ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.284 -0.090 0.150 4.625 -7.078 -1.567 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.406 -0.107 0.145 7.624 -4.914 0.968 2 A_DG2:DC21_B A 2 ? B 21 ? 19 1 1 A DG 3 1_555 B DC 9 1_555 -0.517 -0.142 -0.289 -10.653 -12.102 0.482 3 A_DG3:DC20_B A 3 ? B 20 ? 19 1 1 A DA 4 1_555 B DT 8 1_555 0.202 0.003 -0.138 -7.340 -4.554 -0.675 4 A_DA4:DT19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.643 -0.148 -0.309 8.195 7.885 0.605 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DA 7 1_555 B DT 5 1_555 0.101 -0.024 -0.191 3.995 -15.531 0.148 6 A_DA7:DT16_B A 7 ? B 16 ? 20 1 1 A DG 8 1_555 B DC 4 1_555 -0.491 -0.152 0.174 1.395 -8.643 -0.880 7 A_DG8:DC15_B A 8 ? B 15 ? 19 1 1 A DA 9 1_555 B DT 3 1_555 0.027 -0.017 -0.295 -7.446 -13.942 0.167 8 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DA 10 1_555 B DT 2 1_555 0.305 0.010 -0.227 -6.403 -15.450 -1.139 9 A_DA10:DT13_B A 10 ? B 13 ? 20 1 1 A DG 11 1_555 B DC 1 1_555 -0.351 -0.103 0.058 -7.965 -17.511 -0.419 10 A_DG11:DC12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.685 -1.328 3.277 -1.889 1.626 27.526 -3.169 -1.885 3.142 3.408 3.960 27.637 1 AA_DC1DG2:DC21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DG 2 1_555 B DC 10 1_555 A DG 3 1_555 B DC 9 1_555 0.039 -1.571 3.709 2.689 6.646 34.850 -3.630 0.365 3.356 10.953 -4.431 35.557 2 AA_DG2DG3:DC20DC21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DG 3 1_555 B DC 9 1_555 A DA 4 1_555 B DT 8 1_555 -0.333 -0.818 3.263 0.670 2.813 33.897 -1.840 0.674 3.180 4.814 -1.146 34.016 3 AA_DG3DA4:DT19DC20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 0.716 -0.431 3.062 0.909 2.489 29.109 -1.358 -1.234 3.036 4.940 -1.804 29.226 4 AA_DA4DC5:DG18DT19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DA 7 1_555 B DT 5 1_555 A DG 8 1_555 B DC 4 1_555 0.055 -1.192 3.263 -5.087 5.101 31.075 -3.070 -0.996 2.988 9.365 9.338 31.879 5 AA_DA7DG8:DC15DT16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DG 8 1_555 B DC 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.361 -1.379 3.548 3.359 4.892 33.815 -3.143 1.165 3.272 8.331 -5.719 34.317 6 AA_DG8DA9:DT14DC15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DA 10 1_555 B DT 2 1_555 -0.622 -0.481 3.280 -1.138 1.921 35.528 -1.067 0.851 3.268 3.144 1.863 35.596 7 AA_DA9DA10:DT13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DA 10 1_555 B DT 2 1_555 A DG 11 1_555 B DC 1 1_555 0.466 -0.837 3.371 -3.117 5.970 29.660 -2.792 -1.513 3.084 11.476 5.993 30.398 8 AA_DA10DG11:DC12DT13_BB A 10 ? B 13 ? A 11 ? B 12 ? #