data_2MIV # _entry.id 2MIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MIV pdb_00002miv 10.2210/pdb2miv/pdb RCSB RCSB103665 ? ? BMRB 19695 ? 10.13018/BMR19695 WWPDB D_1000103665 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-02 2 'Structure model' 1 1 2014-04-09 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MIV _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-20 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19695 BMRB unspecified . 2MIW PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rodriguez, F.A.' 1 'Liu, Z.' 2 'Lin, C.H.' 3 'Ding, S.' 4 'Cai, Y.' 5 'Kolbanovskiy, A.' 6 'Kolbanovskiy, M.' 7 'Amin, S.' 8 'Broyde, S.' 9 'Geacintov, N.E.' 10 # _citation.id primary _citation.title ;Nuclear Magnetic Resonance Studies of an N(2)-Guanine Adduct Derived from the Tumorigen Dibenzo[a,l]pyrene in DNA: Impact of Adduct Stereochemistry, Size, and Local DNA Sequence on Solution Conformations. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 53 _citation.page_first 1827 _citation.page_last 1841 _citation.year 2014 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24617538 _citation.pdbx_database_id_DOI 10.1021/bi4017044 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rodriguez, F.A.' 1 ? primary 'Liu, Z.' 2 ? primary 'Lin, C.H.' 3 ? primary 'Ding, S.' 4 ? primary 'Cai, Y.' 5 ? primary 'Kolbanovskiy, A.' 6 ? primary 'Kolbanovskiy, M.' 7 ? primary 'Amin, S.' 8 ? primary 'Broyde, S.' 9 ? primary 'Geacintov, N.E.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "DNA_(5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3')" 3254.138 1 ? ? ? ? 2 polymer syn "DNA_(5'-D(*GP*GP*TP*AP*GP*GP*AP*TP*GP*G)-3')" 3165.076 1 ? ? ? ? 3 non-polymer syn '(11R,12R,13R)-11,12,13,14-tetrahydronaphtho[1,2,3,4-pqr]tetraphene-11,12,13-triol' 354.398 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC)' CCATCGCTACC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DG)(DG)(DA)(DT)(DG)(DG)' GGTAGGATGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '(11R,12R,13R)-11,12,13,14-tetrahydronaphtho[1,2,3,4-pqr]tetraphene-11,12,13-triol' _pdbx_entity_nonpoly.comp_id 2QL # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DC n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DG n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2QL non-polymer . '(11R,12R,13R)-11,12,13,14-tetrahydronaphtho[1,2,3,4-pqr]tetraphene-11,12,13-triol' ? 'C24 H18 O3' 354.398 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DC 11 11 11 DC DC A . n B 2 1 DG 1 12 12 DG DG B . n B 2 2 DG 2 13 13 DG DG B . n B 2 3 DT 3 14 14 DT DT B . n B 2 4 DA 4 15 15 DA DA B . n B 2 5 DG 5 16 16 DG DG B . n B 2 6 DG 6 17 17 DG DG B . n B 2 7 DA 7 18 18 DA DA B . n B 2 8 DT 8 19 19 DT DT B . n B 2 9 DG 9 20 20 DG DG B . n B 2 10 DG 10 21 21 DG DG B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 2QL _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 22 _pdbx_nonpoly_scheme.pdb_mon_id 2QL _pdbx_nonpoly_scheme.auth_mon_id DBP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MIV _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MIV _struct.title ;NMR studies of N2-guanine adducts derived from the tumorigen dibenzo[a,l]pyrene in DNA: Impact of adduct stereochemistry, size, and local DNA structure on solution conformations ; _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MIV _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, 14S(-)-trans-anti-DB[a, l]P-N2-dG, DNA adduct' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2MIV 2MIV 1 ? CCATCGCTACC ? 2 PDB 2MIV 2MIV 2 ? GGTAGGATGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MIV A 1 ? 11 ? 2MIV 1 ? 11 ? 1 11 2 2 2MIV B 1 ? 10 ? 2MIV 12 ? 21 ? 12 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1630 ? 1 MORE -4 ? 1 'SSA (A^2)' 4200 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 6 N2 ? ? ? 1_555 C 2QL . C14 ? ? A DG 6 A 2QL 101 1_555 ? ? ? ? ? ? ? 1.486 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 2QL _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE 2QL A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 5 DG A 6 ? DG A 6 . ? 1_555 ? 3 AC1 5 DC A 7 ? DC A 7 . ? 1_555 ? 4 AC1 5 DG B 5 ? DG B 16 . ? 1_555 ? 5 AC1 5 DG B 6 ? DG B 17 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.71 121.90 -5.19 0.70 N 2 1 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.61 121.90 -4.29 0.70 N 3 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.89 117.00 -3.11 0.50 N 4 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 121.08 117.70 3.38 0.50 N 5 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 112.96 118.60 -5.64 0.60 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.17 108.30 2.87 0.30 N 7 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.37 108.30 2.07 0.30 N 8 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.18 121.90 -4.72 0.70 N 9 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.04 108.30 2.74 0.30 N 10 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.56 108.30 2.26 0.30 N 11 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 112.20 108.30 3.90 0.30 N 12 1 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.36 117.00 -3.64 0.50 N 13 1 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.74 117.70 4.04 0.50 N 14 1 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.16 118.60 -4.44 0.60 N 15 1 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 117.51 121.90 -4.39 0.70 N 16 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 115.16 108.30 6.86 0.30 N 17 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.74 108.30 2.44 0.30 N 18 1 C4 B DA 15 ? ? C5 B DA 15 ? ? C6 B DA 15 ? ? 113.46 117.00 -3.54 0.50 N 19 1 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 121.33 117.70 3.63 0.50 N 20 1 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 112.17 118.60 -6.43 0.60 N 21 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.36 108.30 3.06 0.30 N 22 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 111.11 108.30 2.81 0.30 N 23 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 111.64 108.30 3.34 0.30 N 24 1 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.68 117.00 -3.32 0.50 N 25 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 120.74 117.70 3.04 0.50 N 26 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 112.82 118.60 -5.78 0.60 N 27 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 112.52 108.30 4.22 0.30 N 28 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.59 108.30 3.29 0.30 N 29 2 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.71 118.90 3.81 0.60 N 30 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.27 121.90 -5.63 0.70 N 31 2 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.67 117.00 -3.33 0.50 N 32 2 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 120.92 117.70 3.22 0.50 N 33 2 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 112.44 118.60 -6.16 0.60 N 34 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.57 108.30 2.27 0.30 N 35 2 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.63 121.90 -4.27 0.70 N 36 2 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.23 119.90 -3.67 0.60 N 37 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.99 108.30 2.69 0.30 N 38 2 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 112.36 108.30 4.06 0.30 N 39 2 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.79 117.00 -3.21 0.50 N 40 2 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.10 117.70 3.40 0.50 N 41 2 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.31 118.60 -4.29 0.60 N 42 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.31 108.30 2.01 0.30 N 43 2 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 117.21 121.90 -4.69 0.70 N 44 2 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.43 121.90 -4.47 0.70 N 45 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 112.89 108.30 4.59 0.30 N 46 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.42 108.30 2.12 0.30 N 47 2 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 111.44 108.30 3.14 0.30 N 48 2 C4 B DA 15 ? ? C5 B DA 15 ? ? C6 B DA 15 ? ? 113.82 117.00 -3.18 0.50 N 49 2 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.16 118.60 -4.44 0.60 N 50 2 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 111.00 108.30 2.70 0.30 N 51 2 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.46 117.00 -3.54 0.50 N 52 2 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.14 117.70 3.44 0.50 N 53 2 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.27 118.60 -5.33 0.60 N 54 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 113.16 108.30 4.86 0.30 N 55 2 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.39 108.30 2.09 0.30 N 56 3 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.57 118.90 3.67 0.60 N 57 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.48 121.90 -5.42 0.70 N 58 3 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.97 117.00 -3.03 0.50 N 59 3 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 121.11 117.70 3.41 0.50 N 60 3 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 112.59 118.60 -6.01 0.60 N 61 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.40 108.30 3.10 0.30 N 62 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.24 108.30 1.94 0.30 N 63 3 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.18 121.90 -4.72 0.70 N 64 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.50 108.30 2.20 0.30 N 65 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.38 108.30 2.08 0.30 N 66 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.18 122.90 -3.72 0.60 N 67 3 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 112.50 108.30 4.20 0.30 N 68 3 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.25 117.00 -3.75 0.50 N 69 3 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.63 117.70 3.93 0.50 N 70 3 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.53 118.60 -5.07 0.60 N 71 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.23 108.30 1.93 0.30 N 72 3 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 117.50 121.90 -4.40 0.70 N 73 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.18 108.30 1.88 0.30 N 74 3 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.42 121.90 -4.48 0.70 N 75 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.45 108.30 5.15 0.30 N 76 3 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.32 108.30 2.02 0.30 N 77 3 C4 B DA 15 ? ? C5 B DA 15 ? ? C6 B DA 15 ? ? 113.57 117.00 -3.43 0.50 N 78 3 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 121.30 117.70 3.60 0.50 N 79 3 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 112.89 118.60 -5.71 0.60 N 80 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.68 108.30 2.38 0.30 N 81 3 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 110.81 108.30 2.51 0.30 N 82 3 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.88 117.00 -3.12 0.50 N 83 3 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 120.80 117.70 3.10 0.50 N 84 3 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.67 118.60 -4.93 0.60 N 85 3 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 114.30 108.30 6.00 0.30 N 86 3 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.28 108.30 1.98 0.30 N 87 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.26 108.30 1.96 0.30 N 88 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.43 121.90 -4.47 0.70 N 89 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.14 108.30 2.84 0.30 N 90 4 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.60 121.90 -4.30 0.70 N 91 4 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.65 117.00 -3.35 0.50 N 92 4 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 121.04 117.70 3.34 0.50 N 93 4 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 112.59 118.60 -6.01 0.60 N 94 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.65 108.30 3.35 0.30 N 95 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.04 122.90 -3.86 0.60 N 96 4 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.38 121.90 -4.52 0.70 N 97 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.61 108.30 2.31 0.30 N 98 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.50 108.30 3.20 0.30 N 99 4 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 117.52 121.90 -4.38 0.70 N 100 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.74 108.30 2.44 0.30 N 101 4 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 112.86 108.30 4.56 0.30 N 102 4 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.77 117.00 -3.23 0.50 N 103 4 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.42 117.70 3.72 0.50 N 104 4 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.86 118.60 -4.74 0.60 N 105 4 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.81 121.90 -5.09 0.70 N 106 4 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.68 121.90 -5.22 0.70 N 107 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 112.15 108.30 3.85 0.30 N 108 4 C4 B DA 15 ? ? C5 B DA 15 ? ? C6 B DA 15 ? ? 113.46 117.00 -3.54 0.50 N 109 4 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 121.05 117.70 3.35 0.50 N 110 4 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 113.36 118.60 -5.24 0.60 N 111 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.27 108.30 1.97 0.30 N 112 4 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 110.44 108.30 2.14 0.30 N 113 4 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.83 117.00 -3.17 0.50 N 114 4 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 120.90 117.70 3.20 0.50 N 115 4 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.69 118.60 -4.91 0.60 N 116 4 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 113.59 108.30 5.29 0.30 N 117 4 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.19 108.30 2.89 0.30 N 118 5 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.69 118.90 3.79 0.60 N 119 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.27 121.90 -5.63 0.70 N 120 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.12 108.30 1.82 0.30 N 121 5 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.30 117.00 -3.70 0.50 N 122 5 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 121.19 117.70 3.49 0.50 N 123 5 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 113.38 118.60 -5.22 0.60 N 124 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.55 108.30 3.25 0.30 N 125 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.13 122.90 -3.77 0.60 N 126 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.39 108.30 3.09 0.30 N 127 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.10 108.30 2.80 0.30 N 128 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 112.73 108.30 4.43 0.30 N 129 5 N3 A DC 7 ? ? C4 A DC 7 ? ? N4 A DC 7 ? ? 113.47 118.00 -4.53 0.70 N 130 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.55 122.90 -4.35 0.60 N 131 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 113.65 108.30 5.35 0.30 N 132 5 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.55 117.00 -3.45 0.50 N 133 5 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.84 117.70 4.14 0.50 N 134 5 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.16 118.60 -5.44 0.60 N 135 5 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.75 121.90 -5.15 0.70 N 136 5 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.59 121.90 -5.31 0.70 N 137 5 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.94 108.30 3.64 0.30 N 138 5 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.15 122.90 -3.75 0.60 N 139 5 C4 B DA 15 ? ? C5 B DA 15 ? ? C6 B DA 15 ? ? 113.82 117.00 -3.18 0.50 N 140 5 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 121.23 117.70 3.53 0.50 N 141 5 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 113.27 118.60 -5.33 0.60 N 142 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.74 108.30 3.44 0.30 N 143 5 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.90 108.30 2.60 0.30 N 144 5 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.93 117.00 -3.07 0.50 N 145 5 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 121.10 117.70 3.40 0.50 N 146 5 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 113.28 118.60 -5.32 0.60 N 147 5 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 113.79 108.30 5.49 0.30 N 148 5 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.98 108.30 2.68 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 6 ? ? 0.088 'SIDE CHAIN' 2 1 DT A 8 ? ? 0.083 'SIDE CHAIN' 3 1 DC A 11 ? ? 0.150 'SIDE CHAIN' 4 1 DG B 20 ? ? 0.075 'SIDE CHAIN' 5 2 DG A 6 ? ? 0.091 'SIDE CHAIN' 6 2 DT A 8 ? ? 0.090 'SIDE CHAIN' 7 2 DC A 11 ? ? 0.078 'SIDE CHAIN' 8 2 DA B 15 ? ? 0.071 'SIDE CHAIN' 9 2 DG B 17 ? ? 0.067 'SIDE CHAIN' 10 3 DC A 5 ? ? 0.063 'SIDE CHAIN' 11 3 DT A 8 ? ? 0.109 'SIDE CHAIN' 12 3 DA A 9 ? ? 0.067 'SIDE CHAIN' 13 3 DC A 11 ? ? 0.097 'SIDE CHAIN' 14 3 DA B 15 ? ? 0.055 'SIDE CHAIN' 15 3 DG B 16 ? ? 0.057 'SIDE CHAIN' 16 3 DG B 20 ? ? 0.064 'SIDE CHAIN' 17 4 DC A 5 ? ? 0.083 'SIDE CHAIN' 18 4 DG A 6 ? ? 0.109 'SIDE CHAIN' 19 4 DT A 8 ? ? 0.092 'SIDE CHAIN' 20 4 DC A 11 ? ? 0.103 'SIDE CHAIN' 21 4 DG B 20 ? ? 0.059 'SIDE CHAIN' 22 5 DC A 5 ? ? 0.085 'SIDE CHAIN' 23 5 DG A 6 ? ? 0.072 'SIDE CHAIN' 24 5 DT A 8 ? ? 0.071 'SIDE CHAIN' 25 5 DC A 11 ? ? 0.117 'SIDE CHAIN' 26 5 DG B 20 ? ? 0.083 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'representative structures' _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MIV _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MIV _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.5 mM DB[a,l]P covalently bound to 11mer DNA duplex, 100 mM NaCl, 10 mM Na2HPO4, 25 mM DSS, 100% D2O' 1 '100% D2O' '1.5 mM DB[a,l]P covalently bound to 11mer DNA duplex, 100 mM NaCl, 10 mM Na2HPO4, 25 mM DSS, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'DB[a,l]P covalently bound to 11mer DNA duplex-1' 1.5 ? mM ? 1 NaCl-2 100 ? mM ? 1 Na2HPO4-3 10 ? mM ? 1 DSS-4 25 ? mM ? 1 'DB[a,l]P covalently bound to 11mer DNA duplex-5' 1.5 ? mM ? 2 NaCl-6 100 ? mM ? 2 Na2HPO4-7 10 ? mM ? 2 DSS-8 25 ? mM ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 2 '2D 1H-1H NOESY' 1 4 1 '2D 1H-1H COSY' # _pdbx_nmr_refine.entry_id 2MIV _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'data analysis' Sparky ? 1 Goddard 'chemical shift assignment' Sparky ? 2 'Bruker Biospin' collection TopSpin ? 3 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2QL C14 C N N 1 2QL C13 C N R 2 2QL O13 O N N 3 2QL C12 C N R 4 2QL O12 O N N 5 2QL C11 C N R 6 2QL O11 O N N 7 2QL C16 C Y N 8 2QL C10 C Y N 9 2QL C17 C Y N 10 2QL C18 C Y N 11 2QL C9 C Y N 12 2QL C8 C Y N 13 2QL C20 C Y N 14 2QL C21 C Y N 15 2QL C7 C Y N 16 2QL C6 C Y N 17 2QL C5 C Y N 18 2QL C22 C Y N 19 2QL C23 C Y N 20 2QL C4 C Y N 21 2QL C3 C Y N 22 2QL C2 C Y N 23 2QL C1 C Y N 24 2QL C24 C Y N 25 2QL C19 C Y N 26 2QL C15 C Y N 27 2QL H14 H N N 28 2QL H15 H N N 29 2QL H13 H N N 30 2QL HO13 H N N 31 2QL H12 H N N 32 2QL HO12 H N N 33 2QL H11 H N N 34 2QL HO11 H N N 35 2QL H10 H N N 36 2QL H9 H N N 37 2QL H8 H N N 38 2QL H7 H N N 39 2QL H6 H N N 40 2QL H5 H N N 41 2QL H4 H N N 42 2QL H3 H N N 43 2QL H2 H N N 44 2QL H1 H N N 45 DA OP3 O N N 46 DA P P N N 47 DA OP1 O N N 48 DA OP2 O N N 49 DA "O5'" O N N 50 DA "C5'" C N N 51 DA "C4'" C N R 52 DA "O4'" O N N 53 DA "C3'" C N S 54 DA "O3'" O N N 55 DA "C2'" C N N 56 DA "C1'" C N R 57 DA N9 N Y N 58 DA C8 C Y N 59 DA N7 N Y N 60 DA C5 C Y N 61 DA C6 C Y N 62 DA N6 N N N 63 DA N1 N Y N 64 DA C2 C Y N 65 DA N3 N Y N 66 DA C4 C Y N 67 DA HOP3 H N N 68 DA HOP2 H N N 69 DA "H5'" H N N 70 DA "H5''" H N N 71 DA "H4'" H N N 72 DA "H3'" H N N 73 DA "HO3'" H N N 74 DA "H2'" H N N 75 DA "H2''" H N N 76 DA "H1'" H N N 77 DA H8 H N N 78 DA H61 H N N 79 DA H62 H N N 80 DA H2 H N N 81 DC OP3 O N N 82 DC P P N N 83 DC OP1 O N N 84 DC OP2 O N N 85 DC "O5'" O N N 86 DC "C5'" C N N 87 DC "C4'" C N R 88 DC "O4'" O N N 89 DC "C3'" C N S 90 DC "O3'" O N N 91 DC "C2'" C N N 92 DC "C1'" C N R 93 DC N1 N N N 94 DC C2 C N N 95 DC O2 O N N 96 DC N3 N N N 97 DC C4 C N N 98 DC N4 N N N 99 DC C5 C N N 100 DC C6 C N N 101 DC HOP3 H N N 102 DC HOP2 H N N 103 DC "H5'" H N N 104 DC "H5''" H N N 105 DC "H4'" H N N 106 DC "H3'" H N N 107 DC "HO3'" H N N 108 DC "H2'" H N N 109 DC "H2''" H N N 110 DC "H1'" H N N 111 DC H41 H N N 112 DC H42 H N N 113 DC H5 H N N 114 DC H6 H N N 115 DG OP3 O N N 116 DG P P N N 117 DG OP1 O N N 118 DG OP2 O N N 119 DG "O5'" O N N 120 DG "C5'" C N N 121 DG "C4'" C N R 122 DG "O4'" O N N 123 DG "C3'" C N S 124 DG "O3'" O N N 125 DG "C2'" C N N 126 DG "C1'" C N R 127 DG N9 N Y N 128 DG C8 C Y N 129 DG N7 N Y N 130 DG C5 C Y N 131 DG C6 C N N 132 DG O6 O N N 133 DG N1 N N N 134 DG C2 C N N 135 DG N2 N N N 136 DG N3 N N N 137 DG C4 C Y N 138 DG HOP3 H N N 139 DG HOP2 H N N 140 DG "H5'" H N N 141 DG "H5''" H N N 142 DG "H4'" H N N 143 DG "H3'" H N N 144 DG "HO3'" H N N 145 DG "H2'" H N N 146 DG "H2''" H N N 147 DG "H1'" H N N 148 DG H8 H N N 149 DG H1 H N N 150 DG H21 H N N 151 DG H22 H N N 152 DT OP3 O N N 153 DT P P N N 154 DT OP1 O N N 155 DT OP2 O N N 156 DT "O5'" O N N 157 DT "C5'" C N N 158 DT "C4'" C N R 159 DT "O4'" O N N 160 DT "C3'" C N S 161 DT "O3'" O N N 162 DT "C2'" C N N 163 DT "C1'" C N R 164 DT N1 N N N 165 DT C2 C N N 166 DT O2 O N N 167 DT N3 N N N 168 DT C4 C N N 169 DT O4 O N N 170 DT C5 C N N 171 DT C7 C N N 172 DT C6 C N N 173 DT HOP3 H N N 174 DT HOP2 H N N 175 DT "H5'" H N N 176 DT "H5''" H N N 177 DT "H4'" H N N 178 DT "H3'" H N N 179 DT "HO3'" H N N 180 DT "H2'" H N N 181 DT "H2''" H N N 182 DT "H1'" H N N 183 DT H3 H N N 184 DT H71 H N N 185 DT H72 H N N 186 DT H73 H N N 187 DT H6 H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2QL C7 C6 doub Y N 1 2QL C7 C20 sing Y N 2 2QL C6 C5 sing Y N 3 2QL C8 C20 doub Y N 4 2QL C8 C9 sing Y N 5 2QL C20 C21 sing Y N 6 2QL C5 C22 doub Y N 7 2QL C9 C17 doub Y N 8 2QL C21 C22 sing Y N 9 2QL C21 C18 doub Y N 10 2QL C22 C23 sing Y N 11 2QL C17 C18 sing Y N 12 2QL C17 C10 sing Y N 13 2QL C18 C19 sing Y N 14 2QL C23 C4 doub Y N 15 2QL C23 C24 sing Y N 16 2QL C4 C3 sing Y N 17 2QL C10 C16 doub Y N 18 2QL C19 C24 sing Y N 19 2QL C19 C15 doub Y N 20 2QL C24 C1 doub Y N 21 2QL C3 C2 doub Y N 22 2QL C16 C15 sing Y N 23 2QL C16 C11 sing N N 24 2QL C15 C14 sing N N 25 2QL C1 C2 sing Y N 26 2QL C11 O11 sing N N 27 2QL C11 C12 sing N N 28 2QL O13 C13 sing N N 29 2QL C14 C13 sing N N 30 2QL C13 C12 sing N N 31 2QL C12 O12 sing N N 32 2QL C14 H14 sing N N 33 2QL C14 H15 sing N N 34 2QL C13 H13 sing N N 35 2QL O13 HO13 sing N N 36 2QL C12 H12 sing N N 37 2QL O12 HO12 sing N N 38 2QL C11 H11 sing N N 39 2QL O11 HO11 sing N N 40 2QL C10 H10 sing N N 41 2QL C9 H9 sing N N 42 2QL C8 H8 sing N N 43 2QL C7 H7 sing N N 44 2QL C6 H6 sing N N 45 2QL C5 H5 sing N N 46 2QL C4 H4 sing N N 47 2QL C3 H3 sing N N 48 2QL C2 H2 sing N N 49 2QL C1 H1 sing N N 50 DA OP3 P sing N N 51 DA OP3 HOP3 sing N N 52 DA P OP1 doub N N 53 DA P OP2 sing N N 54 DA P "O5'" sing N N 55 DA OP2 HOP2 sing N N 56 DA "O5'" "C5'" sing N N 57 DA "C5'" "C4'" sing N N 58 DA "C5'" "H5'" sing N N 59 DA "C5'" "H5''" sing N N 60 DA "C4'" "O4'" sing N N 61 DA "C4'" "C3'" sing N N 62 DA "C4'" "H4'" sing N N 63 DA "O4'" "C1'" sing N N 64 DA "C3'" "O3'" sing N N 65 DA "C3'" "C2'" sing N N 66 DA "C3'" "H3'" sing N N 67 DA "O3'" "HO3'" sing N N 68 DA "C2'" "C1'" sing N N 69 DA "C2'" "H2'" sing N N 70 DA "C2'" "H2''" sing N N 71 DA "C1'" N9 sing N N 72 DA "C1'" "H1'" sing N N 73 DA N9 C8 sing Y N 74 DA N9 C4 sing Y N 75 DA C8 N7 doub Y N 76 DA C8 H8 sing N N 77 DA N7 C5 sing Y N 78 DA C5 C6 sing Y N 79 DA C5 C4 doub Y N 80 DA C6 N6 sing N N 81 DA C6 N1 doub Y N 82 DA N6 H61 sing N N 83 DA N6 H62 sing N N 84 DA N1 C2 sing Y N 85 DA C2 N3 doub Y N 86 DA C2 H2 sing N N 87 DA N3 C4 sing Y N 88 DC OP3 P sing N N 89 DC OP3 HOP3 sing N N 90 DC P OP1 doub N N 91 DC P OP2 sing N N 92 DC P "O5'" sing N N 93 DC OP2 HOP2 sing N N 94 DC "O5'" "C5'" sing N N 95 DC "C5'" "C4'" sing N N 96 DC "C5'" "H5'" sing N N 97 DC "C5'" "H5''" sing N N 98 DC "C4'" "O4'" sing N N 99 DC "C4'" "C3'" sing N N 100 DC "C4'" "H4'" sing N N 101 DC "O4'" "C1'" sing N N 102 DC "C3'" "O3'" sing N N 103 DC "C3'" "C2'" sing N N 104 DC "C3'" "H3'" sing N N 105 DC "O3'" "HO3'" sing N N 106 DC "C2'" "C1'" sing N N 107 DC "C2'" "H2'" sing N N 108 DC "C2'" "H2''" sing N N 109 DC "C1'" N1 sing N N 110 DC "C1'" "H1'" sing N N 111 DC N1 C2 sing N N 112 DC N1 C6 sing N N 113 DC C2 O2 doub N N 114 DC C2 N3 sing N N 115 DC N3 C4 doub N N 116 DC C4 N4 sing N N 117 DC C4 C5 sing N N 118 DC N4 H41 sing N N 119 DC N4 H42 sing N N 120 DC C5 C6 doub N N 121 DC C5 H5 sing N N 122 DC C6 H6 sing N N 123 DG OP3 P sing N N 124 DG OP3 HOP3 sing N N 125 DG P OP1 doub N N 126 DG P OP2 sing N N 127 DG P "O5'" sing N N 128 DG OP2 HOP2 sing N N 129 DG "O5'" "C5'" sing N N 130 DG "C5'" "C4'" sing N N 131 DG "C5'" "H5'" sing N N 132 DG "C5'" "H5''" sing N N 133 DG "C4'" "O4'" sing N N 134 DG "C4'" "C3'" sing N N 135 DG "C4'" "H4'" sing N N 136 DG "O4'" "C1'" sing N N 137 DG "C3'" "O3'" sing N N 138 DG "C3'" "C2'" sing N N 139 DG "C3'" "H3'" sing N N 140 DG "O3'" "HO3'" sing N N 141 DG "C2'" "C1'" sing N N 142 DG "C2'" "H2'" sing N N 143 DG "C2'" "H2''" sing N N 144 DG "C1'" N9 sing N N 145 DG "C1'" "H1'" sing N N 146 DG N9 C8 sing Y N 147 DG N9 C4 sing Y N 148 DG C8 N7 doub Y N 149 DG C8 H8 sing N N 150 DG N7 C5 sing Y N 151 DG C5 C6 sing N N 152 DG C5 C4 doub Y N 153 DG C6 O6 doub N N 154 DG C6 N1 sing N N 155 DG N1 C2 sing N N 156 DG N1 H1 sing N N 157 DG C2 N2 sing N N 158 DG C2 N3 doub N N 159 DG N2 H21 sing N N 160 DG N2 H22 sing N N 161 DG N3 C4 sing N N 162 DT OP3 P sing N N 163 DT OP3 HOP3 sing N N 164 DT P OP1 doub N N 165 DT P OP2 sing N N 166 DT P "O5'" sing N N 167 DT OP2 HOP2 sing N N 168 DT "O5'" "C5'" sing N N 169 DT "C5'" "C4'" sing N N 170 DT "C5'" "H5'" sing N N 171 DT "C5'" "H5''" sing N N 172 DT "C4'" "O4'" sing N N 173 DT "C4'" "C3'" sing N N 174 DT "C4'" "H4'" sing N N 175 DT "O4'" "C1'" sing N N 176 DT "C3'" "O3'" sing N N 177 DT "C3'" "C2'" sing N N 178 DT "C3'" "H3'" sing N N 179 DT "O3'" "HO3'" sing N N 180 DT "C2'" "C1'" sing N N 181 DT "C2'" "H2'" sing N N 182 DT "C2'" "H2''" sing N N 183 DT "C1'" N1 sing N N 184 DT "C1'" "H1'" sing N N 185 DT N1 C2 sing N N 186 DT N1 C6 sing N N 187 DT C2 O2 doub N N 188 DT C2 N3 sing N N 189 DT N3 C4 sing N N 190 DT N3 H3 sing N N 191 DT C4 O4 doub N N 192 DT C4 C5 sing N N 193 DT C5 C7 sing N N 194 DT C5 C6 doub N N 195 DT C7 H71 sing N N 196 DT C7 H72 sing N N 197 DT C7 H73 sing N N 198 DT C6 H6 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MIV 'double helix' 2MIV 'b-form double helix' 2MIV 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 -0.334 0.147 1.811 -49.306 18.571 -1.231 1 A_DC1:DG21_B A 1 ? B 21 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.346 -0.100 1.041 -12.783 16.210 8.829 2 A_DC2:DG20_B A 2 ? B 20 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 -0.030 -0.002 0.196 0.688 -8.888 1.210 3 A_DA3:DT19_B A 3 ? B 19 ? 20 1 1 A DT 4 1_555 B DA 7 1_555 0.007 -0.027 0.061 8.316 -12.914 1.920 4 A_DT4:DA18_B A 4 ? B 18 ? 20 1 1 A DC 5 1_555 B DG 6 1_555 0.494 -0.116 0.005 8.031 -7.873 -1.165 5 A_DC5:DG17_B A 5 ? B 17 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.390 -0.119 -0.021 -9.898 -2.391 -2.092 6 A_DC7:DG16_B A 7 ? B 16 ? 19 1 1 A DT 8 1_555 B DA 4 1_555 -0.045 0.011 0.209 -3.573 -11.433 1.710 7 A_DT8:DA15_B A 8 ? B 15 ? 20 1 1 A DA 9 1_555 B DT 3 1_555 0.300 0.015 0.120 6.243 8.263 -4.394 8 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DC 10 1_555 B DG 2 1_555 0.421 -0.090 0.029 19.404 -12.961 -1.682 9 A_DC10:DG13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.201 -0.057 0.149 -1.301 -21.788 0.937 10 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.042 0.887 2.678 -0.412 3.662 16.859 1.009 -0.080 2.805 12.299 1.383 17.255 1 AA_DC1DC2:DG20DG21_BB A 1 ? B 21 ? A 2 ? B 20 ? 1 A DC 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 0.539 -0.413 2.986 9.753 11.464 30.246 -2.428 0.530 2.702 20.454 -17.402 33.706 2 AA_DC2DA3:DT19DG20_BB A 2 ? B 20 ? A 3 ? B 19 ? 1 A DA 3 1_555 B DT 8 1_555 A DT 4 1_555 B DA 7 1_555 0.007 -1.223 3.197 -0.262 0.436 28.081 -2.620 -0.074 3.178 0.899 0.539 28.086 3 AA_DA3DT4:DA18DT19_BB A 3 ? B 19 ? A 4 ? B 18 ? 1 A DT 4 1_555 B DA 7 1_555 A DC 5 1_555 B DG 6 1_555 0.077 -0.909 3.351 0.929 8.036 31.137 -3.068 0.026 3.029 14.663 -1.696 32.146 4 AA_DT4DC5:DG17DA18_BB A 4 ? B 18 ? A 5 ? B 17 ? 1 A DC 7 1_555 B DG 5 1_555 A DT 8 1_555 B DA 4 1_555 0.159 -1.861 3.225 4.021 -1.416 30.090 -3.266 0.506 3.300 -2.710 -7.696 30.383 5 AA_DC7DT8:DA15DG16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DT 8 1_555 B DA 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.387 -0.855 3.105 -0.567 3.398 21.400 -3.527 0.821 2.944 9.074 1.514 21.672 6 AA_DT8DA9:DT14DA15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DC 10 1_555 B DG 2 1_555 -0.791 -0.254 3.247 -2.601 -4.887 36.096 0.275 0.900 3.300 -7.830 4.167 36.504 7 AA_DA9DC10:DG13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DC 10 1_555 B DG 2 1_555 A DC 11 1_555 B DG 1 1_555 0.455 -1.392 3.783 1.457 3.243 40.609 -2.408 -0.470 3.680 4.663 -2.094 40.758 8 AA_DC10DC11:DG12DG13_BB A 10 ? B 13 ? A 11 ? B 12 ? # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2MIV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_