HEADER PROTEIN BINDING 08-JAN-14 2MJF TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN THE YEAST RSA1 AND HIT1 TITLE 2 PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME ASSEMBLY 1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN HIT1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RSA1, YPL193W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PNEA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 GENE: HIT1, YJR055W, J1705; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PNCS KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.QUINTERNET,B.ROTH,R.BACK,C.JACQUEMIN,X.MANIVAL REVDAT 2 01-OCT-14 2MJF 1 JRNL REVDAT 1 10-SEP-14 2MJF 0 JRNL AUTH B.ROTHE,J.M.SALIOU,M.QUINTERNET,R.BACK,D.TIOTIU,C.JACQUEMIN, JRNL AUTH 2 C.LOEGLER,F.SCHLOTTER,V.PENA,K.ECKERT,S.MORERA, JRNL AUTH 3 A.V.DORSSELAER,C.BRANLANT,S.MASSENET,S.SANGLIER-CIANFERANI, JRNL AUTH 4 X.MANIVAL,B.CHARPENTIER JRNL TITL PROTEIN HIT1, A NOVEL BOX C/D SNORNP ASSEMBLY FACTOR, JRNL TITL 2 CONTROLS CELLULAR CONCENTRATION OF THE SCAFFOLDING PROTEIN JRNL TITL 3 RSA1 BY DIRECT INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 42 10731 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 25170085 JRNL DOI 10.1093/NAR/GKU612 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB103685. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 RSA, 1 MM [U-100% 13C; U-100% REMARK 210 15N] HIT, 150 MM SODIUM CHLORIDE, REMARK 210 90 % H2O, 10 % [U-100% 2H] D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HN(CA)CO; REMARK 210 3D HNHA; 3D HNHB; 3D HCCH-COSY; REMARK 210 3D HCCH-TOCSY; 3D C(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 87 HG SER B 88 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 103.14 -32.42 REMARK 500 1 HIS A 3 87.64 65.99 REMARK 500 1 MET A 4 -171.93 -69.69 REMARK 500 1 ALA A 6 -178.60 60.14 REMARK 500 1 ASN B 42 -163.15 -100.89 REMARK 500 1 SER B 82 145.48 -174.10 REMARK 500 1 SER B 88 161.36 59.01 REMARK 500 1 SER B 89 91.79 68.99 REMARK 500 1 MET B 92 -149.93 -151.27 REMARK 500 1 ASN B 93 -28.09 77.18 REMARK 500 2 ALA A 6 -162.24 -111.18 REMARK 500 2 ASN B 42 -165.48 -129.83 REMARK 500 2 SER B 82 138.38 172.75 REMARK 500 2 ASN B 85 43.45 -85.11 REMARK 500 2 ASP B 86 -72.42 -107.42 REMARK 500 3 HIS A 3 86.39 56.14 REMARK 500 3 ALA A 6 107.39 64.15 REMARK 500 3 ASN B 42 -155.26 -108.87 REMARK 500 3 SER B 82 112.32 174.16 REMARK 500 3 ASP B 86 -77.13 -127.85 REMARK 500 3 SER B 89 -178.76 66.60 REMARK 500 3 MET B 92 -166.62 -124.91 REMARK 500 3 ASN B 93 -35.41 78.30 REMARK 500 3 ILE B 113 -54.48 -130.38 REMARK 500 4 MET A 4 162.28 70.98 REMARK 500 4 ALA A 6 -178.45 -172.35 REMARK 500 4 ASN B 42 -155.75 -119.81 REMARK 500 4 SER B 82 159.53 74.26 REMARK 500 4 SER B 88 99.30 49.24 REMARK 500 4 LYS B 91 42.32 -106.55 REMARK 500 4 MET B 92 155.90 59.37 REMARK 500 4 ASN B 93 -51.99 179.89 REMARK 500 5 MET A 4 30.61 -86.59 REMARK 500 5 SER B 82 133.83 71.97 REMARK 500 5 SER B 88 107.66 -58.51 REMARK 500 5 LYS B 91 53.56 -143.55 REMARK 500 5 MET B 92 -102.13 58.65 REMARK 500 5 ASN B 93 -62.38 66.57 REMARK 500 6 ALA A 6 165.41 64.34 REMARK 500 6 ASN B 42 -161.00 -100.12 REMARK 500 6 ASP B 86 -90.03 -172.95 REMARK 500 6 SER B 89 18.99 -153.56 REMARK 500 6 MET B 92 -42.50 70.42 REMARK 500 6 ASN B 93 -62.90 72.29 REMARK 500 7 HIS A 3 93.30 59.03 REMARK 500 7 ASN B 42 -165.50 -102.41 REMARK 500 7 SER B 82 116.07 -175.13 REMARK 500 7 MET B 92 118.76 -34.62 REMARK 500 8 HIS A 3 -172.72 62.24 REMARK 500 8 SER B 82 111.28 -175.29 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19626 RELATED DB: BMRB DBREF 2MJF A 5 40 UNP Q08932 RSA1_YEAST 317 352 DBREF 2MJF B 41 135 UNP P46973 HIT1_YEAST 70 164 SEQADV 2MJF GLY A 1 UNP Q08932 EXPRESSION TAG SEQADV 2MJF PRO A 2 UNP Q08932 EXPRESSION TAG SEQADV 2MJF HIS A 3 UNP Q08932 EXPRESSION TAG SEQADV 2MJF MET A 4 UNP Q08932 EXPRESSION TAG SEQRES 1 A 40 GLY PRO HIS MET PHE ALA ASN GLU ASN SER GLN LEU LEU SEQRES 2 A 40 ASP PHE ILE ARG GLU LEU GLY ASP VAL GLY LEU LEU GLU SEQRES 3 A 40 TYR GLU LEU SER GLN GLN GLU LYS ASP VAL LEU PHE GLY SEQRES 4 A 40 SER SEQRES 1 B 95 MET ASN LYS THR LEU LYS THR LYS ALA PHE ASP ASP ILE SEQRES 2 B 95 TYR GLN ASN SER ALA GLU LEU GLN GLU LEU LEU LYS TYR SEQRES 3 B 95 ASN THR VAL LYS PHE HIS LEU ALA LYS VAL TYR ARG ILE SEQRES 4 B 95 LEU SER SER THR VAL ASN ASP GLY SER SER GLY LYS MET SEQRES 5 B 95 ASN SER ASP LEU GLN LYS GLU LEU ALA VAL ASN TYR LEU SEQRES 6 B 95 ASN THR LEU ARG TYR GLY GLY ILE HIS TYR ASN GLU ALA SEQRES 7 B 95 ILE GLU GLU PHE CYS GLN ILE LEU LEU ASP LYS LEU ASN SEQRES 8 B 95 ALA VAL LYS LYS HELIX 1 1 ASN A 7 GLY A 23 1 17 HELIX 2 2 SER A 30 PHE A 38 1 9 HELIX 3 3 THR B 47 ASN B 56 1 10 HELIX 4 4 SER B 57 LEU B 64 1 8 HELIX 5 5 TYR B 66 SER B 82 1 17 HELIX 6 6 ASN B 93 ASN B 106 1 14 HELIX 7 7 ASN B 116 ALA B 132 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1