HEADER RNA BINDING PROTEIN 13-JAN-14 2MJN TITLE STRUCTURE, DYNAMICS AND RNA BINDING OF THE MULTI-DOMAIN SPLICING TITLE 2 FACTOR TIA-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLYSIN TIA-1 ISOFORM P40; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TANDEM TIA-1 RRM2 AND RRM3 (UNP RESIDUES 105-285); COMPND 5 SYNONYM: RNA-BINDING PROTEIN TIA-1, T-CELL-RESTRICTED INTRACELLULAR COMPND 6 ANTIGEN-1, TIA-1, P40-TIA-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETTRX-1A KEYWDS RRM, TIA-1, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.SATTLER,I.WANG REVDAT 3 14-JUN-23 2MJN 1 REMARK SEQADV REVDAT 2 04-JUN-14 2MJN 1 JRNL REVDAT 1 09-APR-14 2MJN 0 JRNL AUTH I.WANG,J.HENNIG,P.K.JAGTAP,M.SONNTAG,J.VALCARCEL,M.SATTLER JRNL TITL STRUCTURE, DYNAMICS AND RNA BINDING OF THE MULTI-DOMAIN JRNL TITL 2 SPLICING FACTOR TIA-1. JRNL REF NUCLEIC ACIDS RES. V. 42 5949 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24682828 JRNL DOI 10.1093/NAR/GKU193 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103693. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1-0.7 MM [U-99% 13C; U-99% REMARK 210 15N] TIA-1 RRM2,3, 10 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.1-0.55 MM [U- REMARK 210 99% 15N] TIA-1 RRM2,3, 10 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.1-0.5 MM [U-10% 13C] TIA-1 REMARK 210 RRM2,3, 10 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, TALOS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 237 HZ2 LYS A 238 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 171 -61.20 -91.33 REMARK 500 1 GLU A 183 121.64 65.75 REMARK 500 1 SER A 184 28.84 -163.17 REMARK 500 1 ASN A 185 77.43 70.25 REMARK 500 2 ALA A 92 -175.17 67.80 REMARK 500 2 LYS A 179 -167.06 60.79 REMARK 500 2 THR A 181 16.15 -149.07 REMARK 500 2 TYR A 182 -63.53 -108.27 REMARK 500 2 GLU A 183 94.54 52.55 REMARK 500 2 ASN A 185 -72.77 -171.55 REMARK 500 2 LEU A 214 93.45 -65.86 REMARK 500 2 ASN A 259 99.59 -62.86 REMARK 500 3 ALA A 90 93.96 -160.41 REMARK 500 3 MET A 91 -58.96 73.26 REMARK 500 3 THR A 181 -79.63 -34.05 REMARK 500 3 SER A 184 31.38 -151.29 REMARK 500 3 LEU A 214 94.39 -69.73 REMARK 500 4 ALA A 92 139.65 68.56 REMARK 500 4 TRP A 160 94.13 -69.85 REMARK 500 4 SER A 180 31.72 -88.66 REMARK 500 4 GLU A 183 -159.22 62.60 REMARK 500 4 LYS A 187 -52.66 -121.19 REMARK 500 4 ASN A 259 99.40 -52.12 REMARK 500 5 ASP A 101 66.50 66.80 REMARK 500 5 TYR A 182 34.92 -171.02 REMARK 500 5 ASN A 185 98.57 -168.38 REMARK 500 5 ASN A 259 98.11 -61.23 REMARK 500 6 MET A 91 -53.48 72.67 REMARK 500 6 ARG A 173 -53.80 69.90 REMARK 500 6 THR A 186 81.22 42.98 REMARK 500 6 GLN A 188 -172.75 -174.14 REMARK 500 6 ASN A 259 99.53 -65.83 REMARK 500 7 ALA A 92 171.71 72.59 REMARK 500 7 ARG A 173 -50.84 75.18 REMARK 500 7 THR A 181 -67.80 -138.84 REMARK 500 7 TYR A 182 85.00 179.37 REMARK 500 7 SER A 184 31.00 -153.09 REMARK 500 7 ASN A 185 135.08 -171.96 REMARK 500 7 THR A 186 109.62 -57.85 REMARK 500 7 LYS A 187 -60.71 -151.19 REMARK 500 7 ASN A 259 95.27 -61.61 REMARK 500 8 ALA A 92 -90.06 -159.20 REMARK 500 8 THR A 172 -73.67 -72.01 REMARK 500 8 LYS A 179 3.83 59.89 REMARK 500 8 THR A 181 -58.30 -151.49 REMARK 500 8 TYR A 182 147.22 -177.96 REMARK 500 8 ASN A 259 95.94 -56.70 REMARK 500 9 ALA A 92 179.68 65.15 REMARK 500 9 ARG A 173 118.08 -162.32 REMARK 500 9 PRO A 178 -165.97 -74.10 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 120 0.15 SIDE CHAIN REMARK 500 1 ARG A 167 0.08 SIDE CHAIN REMARK 500 3 ARG A 244 0.07 SIDE CHAIN REMARK 500 5 ARG A 244 0.08 SIDE CHAIN REMARK 500 7 ARG A 164 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19735 RELATED DB: BMRB DBREF 2MJN A 94 274 UNP P31483 TIA1_HUMAN 105 285 SEQADV 2MJN GLY A 89 UNP P31483 EXPRESSION TAG SEQADV 2MJN ALA A 90 UNP P31483 EXPRESSION TAG SEQADV 2MJN MET A 91 UNP P31483 EXPRESSION TAG SEQADV 2MJN ALA A 92 UNP P31483 EXPRESSION TAG SEQADV 2MJN ASN A 93 UNP P31483 EXPRESSION TAG SEQRES 1 A 186 GLY ALA MET ALA ASN HIS PHE HIS VAL PHE VAL GLY ASP SEQRES 2 A 186 LEU SER PRO GLU ILE THR THR GLU ASP ILE LYS ALA ALA SEQRES 3 A 186 PHE ALA PRO PHE GLY ARG ILE SER ASP ALA ARG VAL VAL SEQRES 4 A 186 LYS ASP MET ALA THR GLY LYS SER LYS GLY TYR GLY PHE SEQRES 5 A 186 VAL SER PHE PHE ASN LYS TRP ASP ALA GLU ASN ALA ILE SEQRES 6 A 186 GLN GLN MET GLY GLY GLN TRP LEU GLY GLY ARG GLN ILE SEQRES 7 A 186 ARG THR ASN TRP ALA THR ARG LYS PRO PRO ALA PRO LYS SEQRES 8 A 186 SER THR TYR GLU SER ASN THR LYS GLN LEU SER TYR ASP SEQRES 9 A 186 GLU VAL VAL ASN GLN SER SER PRO SER ASN CYS THR VAL SEQRES 10 A 186 TYR CYS GLY GLY VAL THR SER GLY LEU THR GLU GLN LEU SEQRES 11 A 186 MET ARG GLN THR PHE SER PRO PHE GLY GLN ILE MET GLU SEQRES 12 A 186 ILE ARG VAL PHE PRO ASP LYS GLY TYR SER PHE VAL ARG SEQRES 13 A 186 PHE ASN SER HIS GLU SER ALA ALA HIS ALA ILE VAL SER SEQRES 14 A 186 VAL ASN GLY THR THR ILE GLU GLY HIS VAL VAL LYS CYS SEQRES 15 A 186 TYR TRP GLY LYS HELIX 1 1 THR A 107 ALA A 116 1 10 HELIX 2 2 ASN A 145 MET A 156 1 12 HELIX 3 3 SER A 190 ASN A 196 1 7 HELIX 4 4 THR A 215 SER A 224 1 10 HELIX 5 5 SER A 247 ASN A 259 1 13 SHEET 1 A 4 ILE A 121 LYS A 128 0 SHEET 2 A 4 SER A 135 PHE A 143 -1 O SER A 142 N ASP A 123 SHEET 3 A 4 PHE A 95 GLY A 100 -1 N PHE A 95 O PHE A 143 SHEET 4 A 4 ARG A 167 TRP A 170 -1 O ARG A 167 N GLY A 100 SHEET 1 B 2 TRP A 160 LEU A 161 0 SHEET 2 B 2 ARG A 164 GLN A 165 -1 N ARG A 164 O LEU A 161 SHEET 1 C 4 ILE A 229 PHE A 235 0 SHEET 2 C 4 TYR A 240 PHE A 245 -1 O ARG A 244 N MET A 230 SHEET 3 C 4 THR A 204 GLY A 208 -1 N VAL A 205 O VAL A 243 SHEET 4 C 4 LYS A 269 TRP A 272 -1 O TYR A 271 N TYR A 206 SHEET 1 D 2 THR A 262 ILE A 263 0 SHEET 2 D 2 HIS A 266 VAL A 267 -1 O HIS A 266 N ILE A 263 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1