HEADER TRANSLATION REGULATOR 06-FEB-14 2MKE TITLE SOLUTION STRUCTURE OF CPEB1 ZZ DOMAIN IN THE FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 426-486; COMPND 5 SYNONYM: CPE-BP1, CPE-BINDING PROTEIN 1, H-CEBP, HCPEB-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPEB1, CPEB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS CPEB1, CPEB4, RRM, CYTOPLASMIC POLYADENYLATION ELEMENT, TRANSLATION KEYWDS 2 REGULATION, TRANSLATION REGULATOR EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR T.AFROZ,L.SKRISOVSKA,E.BELLOC,J.G.BOIXET,R.MENDEZ,F.H.-T.ALLAIN REVDAT 2 01-MAY-24 2MKE 1 REMARK LINK REVDAT 1 23-JUL-14 2MKE 0 JRNL AUTH T.AFROZ,L.SKRISOVSKA,E.BELLOC,J.GUILLEN-BOIXET,R.MENDEZ, JRNL AUTH 2 F.H.-T.ALLAIN JRNL TITL A FLY TRAP MECHANISM PROVIDES SEQUENCE-SPECIFIC RNA JRNL TITL 2 RECOGNITION BY CPEB PROTEINS JRNL REF GENES DEV. V. 28 1498 2014 JRNL REFN ISSN 0890-9369 JRNL PMID 24990967 JRNL DOI 10.1101/GAD.241133.114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103719. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4-0.6 MM [U-100% 13C; U-100% REMARK 210 15N] CPEB1ZZ-1, 0.4-0.6 MM [U- REMARK 210 100% 15N] CPEB1ZZ-2, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D 1H-1H REMARK 210 TOCSY; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 439 33.80 39.89 REMARK 500 2 SER A 439 35.43 39.65 REMARK 500 2 PRO A 442 5.39 -63.82 REMARK 500 2 PHE A 453 27.82 -157.14 REMARK 500 2 ARG A 478 12.78 55.72 REMARK 500 3 SER A 439 41.89 39.95 REMARK 500 3 PHE A 453 18.22 -150.98 REMARK 500 4 PRO A 442 18.93 -69.85 REMARK 500 4 PHE A 453 20.71 -150.79 REMARK 500 4 ARG A 483 11.08 -145.70 REMARK 500 5 SER A 433 23.28 -144.42 REMARK 500 5 SER A 439 26.95 40.49 REMARK 500 5 CYS A 452 43.04 -148.89 REMARK 500 5 PHE A 453 43.02 -73.84 REMARK 500 6 SER A 439 21.56 45.87 REMARK 500 6 ARG A 448 75.43 -111.77 REMARK 500 6 PHE A 453 23.86 -147.93 REMARK 500 7 SER A 439 28.15 42.57 REMARK 500 7 CYS A 452 40.89 -150.66 REMARK 500 8 TYR A 429 17.32 56.39 REMARK 500 8 SER A 439 26.27 46.22 REMARK 500 8 PRO A 442 5.53 -57.56 REMARK 500 8 PHE A 453 27.27 46.28 REMARK 500 9 CYS A 438 -17.39 -144.73 REMARK 500 9 PRO A 442 28.93 -67.71 REMARK 500 9 PHE A 453 28.79 -156.45 REMARK 500 10 CYS A 438 -17.60 -142.24 REMARK 500 10 PRO A 442 8.78 -56.96 REMARK 500 10 CYS A 452 40.17 -146.76 REMARK 500 10 PHE A 453 47.64 -75.15 REMARK 500 11 PRO A 428 -8.35 -59.42 REMARK 500 11 SER A 439 27.41 41.61 REMARK 500 11 PRO A 442 -9.45 -56.11 REMARK 500 11 CYS A 452 -69.94 -120.72 REMARK 500 11 ARG A 471 0.60 -68.96 REMARK 500 12 PRO A 442 24.00 -69.42 REMARK 500 12 CYS A 452 35.94 -149.04 REMARK 500 12 PHE A 453 22.62 -68.84 REMARK 500 12 SER A 485 11.26 -141.53 REMARK 500 13 CYS A 452 36.31 -146.93 REMARK 500 13 PHE A 453 34.61 -73.72 REMARK 500 14 ASP A 432 32.93 -77.24 REMARK 500 14 SER A 439 48.14 35.96 REMARK 500 14 PHE A 453 25.71 47.93 REMARK 500 14 ARG A 478 16.53 55.58 REMARK 500 15 PRO A 442 6.94 -62.45 REMARK 500 15 CYS A 452 32.28 -146.19 REMARK 500 15 PHE A 453 38.14 -75.37 REMARK 500 15 ARG A 478 19.99 54.07 REMARK 500 16 PRO A 442 29.82 -71.55 REMARK 500 REMARK 500 THIS ENTRY HAS 97 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 CYS A 438 SG 111.5 REMARK 620 3 CYS A 457 SG 110.7 109.2 REMARK 620 4 CYS A 460 SG 110.2 111.7 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 447 SG REMARK 620 2 CYS A 452 SG 114.6 REMARK 620 3 HIS A 465 NE2 117.1 110.1 REMARK 620 4 HIS A 473 ND1 111.1 110.0 91.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19771 RELATED DB: BMRB REMARK 900 RELATED ID: 2MKH RELATED DB: PDB REMARK 900 RELATED ID: 2MKI RELATED DB: PDB REMARK 900 RELATED ID: 2MKJ RELATED DB: PDB REMARK 900 RELATED ID: 2MKK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE NUMBERS ARE BASED ON ISOFORM 4 OF CPEB1_HUMAN. DBREF 2MKE A 426 486 UNP Q9BZB8 CPEB1_HUMAN 426 486 SEQRES 1 A 61 ILE ASP PRO TYR LEU GLU ASP SER LEU CYS HIS ILE CYS SEQRES 2 A 61 SER SER GLN PRO GLY PRO PHE PHE CYS ARG ASP GLN VAL SEQRES 3 A 61 CYS PHE LYS TYR PHE CYS ARG SER CYS TRP HIS TRP ARG SEQRES 4 A 61 HIS SER MET GLU GLY LEU ARG HIS HIS SER PRO LEU MET SEQRES 5 A 61 ARG ASN GLN LYS ASN ARG ASP SER SER HET ZN A 501 1 HET ZN A 502 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 457 HIS A 465 1 9 HELIX 2 2 MET A 467 ARG A 471 5 5 SHEET 1 A 3 TYR A 455 PHE A 456 0 SHEET 2 A 3 PHE A 445 CYS A 447 -1 N PHE A 445 O PHE A 456 SHEET 3 A 3 PRO A 475 LEU A 476 -1 O LEU A 476 N PHE A 446 LINK SG CYS A 435 ZN ZN A 501 1555 1555 2.00 LINK SG CYS A 438 ZN ZN A 501 1555 1555 2.01 LINK SG CYS A 447 ZN ZN A 502 1555 1555 1.96 LINK SG CYS A 452 ZN ZN A 502 1555 1555 1.96 LINK SG CYS A 457 ZN ZN A 501 1555 1555 1.98 LINK SG CYS A 460 ZN ZN A 501 1555 1555 2.00 LINK NE2 HIS A 465 ZN ZN A 502 1555 1555 1.97 LINK ND1 HIS A 473 ZN ZN A 502 1555 1555 1.99 SITE 1 AC1 4 CYS A 435 CYS A 438 CYS A 457 CYS A 460 SITE 1 AC2 4 CYS A 447 CYS A 452 HIS A 465 HIS A 473 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1