HEADER IMMUNE SYSTEM 13-FEB-14 2MKW TITLE SOLUTION STRUCTURE OF 6AJL2 AND 6AJL2-R24G AMYLOIDOGENICS LIGHT CHAIN TITLE 2 PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: V1-22 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: V1-22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET27 KEYWDS LIGHT CHAIN, AMYLOIDOSIS, SYSTEMIC, LAMBDA, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.AMERO,R.C.MAYA-MARTINEZ,P.C.GIL-RODRIGUEZ REVDAT 3 14-JUN-23 2MKW 1 REMARK SEQADV REVDAT 2 21-JAN-15 2MKW 1 JRNL REVDAT 1 18-JUN-14 2MKW 0 JRNL AUTH R.MAYA-MARTINEZ,P.GIL-RODRIGUEZ,C.AMERO JRNL TITL SOLUTION STRUCTURE OF 6AJL2 AND 6AJL2-R24G AMYLOIDOGENICS JRNL TITL 2 LIGHT CHAIN PROTEINS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 456 695 2015 JRNL REFN ISSN 0006-291X JRNL PMID 25522882 JRNL DOI 10.1016/J.BBRC.2014.12.044 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103737. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 75 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 75 MM SODIUM CHLORIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D 1H REMARK 210 -13C NOESY; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY; 3D HNCO; 3D HN(CO) REMARK 210 CA REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, NMRPIPE, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS CALCULATED USING A COMBINATION OF THE HN REMARK 210 -HSQC, HN-NOESY, D2O-HSQC, SEA-HSQC EXPERIMENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN A 39 O ASP A 88 1.55 REMARK 500 H THR A 5 O THR A 23 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 26 -79.25 167.03 REMARK 500 1 GLU A 51 21.34 43.79 REMARK 500 1 ASP A 52 18.95 46.11 REMARK 500 1 GLN A 54 -175.61 177.52 REMARK 500 1 ASP A 61 41.44 -105.22 REMARK 500 1 GLU A 84 -8.71 -54.83 REMARK 500 1 GLU A 86 96.94 -42.84 REMARK 500 1 ALA A 87 -177.62 -173.70 REMARK 500 2 LYS A 16 -162.15 -72.30 REMARK 500 2 SER A 25 -95.97 -107.34 REMARK 500 2 GLU A 51 21.33 45.64 REMARK 500 2 ASP A 52 19.15 46.55 REMARK 500 2 GLN A 54 169.30 168.94 REMARK 500 2 ASP A 61 -115.12 -99.02 REMARK 500 2 ARG A 62 -64.21 64.97 REMARK 500 2 GLU A 84 -8.91 -54.86 REMARK 500 2 GLU A 86 97.32 -40.24 REMARK 500 2 ALA A 87 -170.77 -178.97 REMARK 500 3 SER A 25 60.37 -115.36 REMARK 500 3 SER A 26 -69.77 176.24 REMARK 500 3 ILE A 29 2.80 -64.92 REMARK 500 3 ASP A 52 18.78 46.35 REMARK 500 3 GLU A 86 102.92 -39.45 REMARK 500 3 ALA A 87 -167.81 175.07 REMARK 500 4 SER A 9 148.28 -170.94 REMARK 500 4 LYS A 16 -157.37 -79.64 REMARK 500 4 SER A 25 54.53 -109.82 REMARK 500 4 SER A 26 -52.94 161.73 REMARK 500 4 GLU A 51 21.62 44.06 REMARK 500 4 ASP A 52 19.67 46.58 REMARK 500 4 ASP A 61 -115.41 -101.73 REMARK 500 4 ARG A 62 -58.83 63.35 REMARK 500 4 GLU A 84 -7.64 -54.98 REMARK 500 4 GLU A 86 95.44 -41.53 REMARK 500 4 ALA A 87 -169.33 -172.94 REMARK 500 5 SER A 26 -0.95 59.83 REMARK 500 5 GLU A 51 21.08 44.08 REMARK 500 5 ASP A 52 18.77 45.86 REMARK 500 5 GLN A 54 164.50 175.99 REMARK 500 5 GLU A 86 101.38 -58.81 REMARK 500 5 ALA A 87 -168.79 176.82 REMARK 500 5 SER A 96 -18.38 -45.34 REMARK 500 6 LYS A 16 -158.82 -88.85 REMARK 500 6 SER A 26 14.70 56.01 REMARK 500 6 GLU A 51 21.56 43.92 REMARK 500 6 ASP A 52 19.37 46.29 REMARK 500 6 GLU A 84 -5.32 -55.01 REMARK 500 6 GLU A 86 109.21 -35.77 REMARK 500 6 ALA A 87 -173.20 172.96 REMARK 500 7 LYS A 16 -166.52 -75.88 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 40 0.21 SIDE CHAIN REMARK 500 1 ARG A 55 0.29 SIDE CHAIN REMARK 500 1 ARG A 62 0.14 SIDE CHAIN REMARK 500 2 ARG A 40 0.19 SIDE CHAIN REMARK 500 2 ARG A 55 0.30 SIDE CHAIN REMARK 500 2 ARG A 62 0.10 SIDE CHAIN REMARK 500 3 ARG A 40 0.28 SIDE CHAIN REMARK 500 3 ARG A 55 0.26 SIDE CHAIN REMARK 500 3 ARG A 62 0.20 SIDE CHAIN REMARK 500 4 ARG A 40 0.27 SIDE CHAIN REMARK 500 4 ARG A 55 0.32 SIDE CHAIN REMARK 500 4 ARG A 62 0.17 SIDE CHAIN REMARK 500 5 ARG A 40 0.21 SIDE CHAIN REMARK 500 5 ARG A 55 0.10 SIDE CHAIN REMARK 500 5 ARG A 62 0.30 SIDE CHAIN REMARK 500 6 ARG A 40 0.31 SIDE CHAIN REMARK 500 6 ARG A 55 0.18 SIDE CHAIN REMARK 500 6 ARG A 62 0.14 SIDE CHAIN REMARK 500 7 ARG A 55 0.31 SIDE CHAIN REMARK 500 7 ARG A 62 0.15 SIDE CHAIN REMARK 500 8 ARG A 40 0.22 SIDE CHAIN REMARK 500 8 ARG A 55 0.09 SIDE CHAIN REMARK 500 8 ARG A 62 0.27 SIDE CHAIN REMARK 500 9 ARG A 40 0.17 SIDE CHAIN REMARK 500 9 ARG A 55 0.16 SIDE CHAIN REMARK 500 9 ARG A 62 0.13 SIDE CHAIN REMARK 500 10 ARG A 40 0.18 SIDE CHAIN REMARK 500 10 ARG A 55 0.18 SIDE CHAIN REMARK 500 11 ARG A 40 0.24 SIDE CHAIN REMARK 500 11 ARG A 55 0.28 SIDE CHAIN REMARK 500 11 ARG A 62 0.22 SIDE CHAIN REMARK 500 12 ARG A 55 0.30 SIDE CHAIN REMARK 500 12 ARG A 62 0.26 SIDE CHAIN REMARK 500 13 ARG A 40 0.21 SIDE CHAIN REMARK 500 13 ARG A 55 0.19 SIDE CHAIN REMARK 500 13 ARG A 62 0.28 SIDE CHAIN REMARK 500 14 ARG A 40 0.13 SIDE CHAIN REMARK 500 14 ARG A 55 0.26 SIDE CHAIN REMARK 500 14 ARG A 62 0.30 SIDE CHAIN REMARK 500 15 ARG A 55 0.29 SIDE CHAIN REMARK 500 15 ARG A 62 0.28 SIDE CHAIN REMARK 500 16 ARG A 40 0.30 SIDE CHAIN REMARK 500 16 ARG A 55 0.30 SIDE CHAIN REMARK 500 16 ARG A 62 0.32 SIDE CHAIN REMARK 500 17 ARG A 40 0.15 SIDE CHAIN REMARK 500 17 ARG A 55 0.13 SIDE CHAIN REMARK 500 17 ARG A 62 0.32 SIDE CHAIN REMARK 500 18 ARG A 40 0.30 SIDE CHAIN REMARK 500 18 ARG A 55 0.15 SIDE CHAIN REMARK 500 18 ARG A 62 0.22 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 55 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15276 RELATED DB: BMRB REMARK 900 RELATED ID: 2W0K RELATED DB: PDB REMARK 900 RELATED ID: 19798 RELATED DB: BMRB DBREF 2MKW A 1 98 UNP Q5NV88 Q5NV88_HUMAN 1 98 SEQADV 2MKW GLY A 24 UNP Q5NV88 ARG 24 ENGINEERED MUTATION SEQADV 2MKW HIS A 99 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW VAL A 100 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW VAL A 101 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW PHE A 102 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW GLY A 103 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW GLY A 104 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW GLY A 105 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW THR A 106 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW LYS A 107 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW LEU A 108 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW THR A 109 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW VAL A 110 UNP Q5NV88 EXPRESSION TAG SEQADV 2MKW LEU A 111 UNP Q5NV88 EXPRESSION TAG SEQRES 1 A 111 ASN PHE MET LEU THR GLN PRO HIS SER VAL SER GLU SER SEQRES 2 A 111 PRO GLY LYS THR VAL THR ILE SER CYS THR GLY SER SER SEQRES 3 A 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 A 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 A 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 A 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 A 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 A 111 GLY THR LYS LEU THR VAL LEU HELIX 1 1 LYS A 82 GLU A 86 5 5 SHEET 1 A 4 MET A 3 THR A 5 0 SHEET 2 A 4 VAL A 18 SER A 25 -1 O THR A 23 N THR A 5 SHEET 3 A 4 SER A 73 ILE A 78 -1 O ALA A 74 N CYS A 22 SHEET 4 A 4 GLY A 65 ASP A 68 -1 N SER A 66 O SER A 75 SHEET 1 B 5 VAL A 10 GLU A 12 0 SHEET 2 B 5 THR A 106 VAL A 110 1 O LYS A 107 N VAL A 10 SHEET 3 B 5 ALA A 87 TYR A 94 -1 N TYR A 89 O THR A 106 SHEET 4 B 5 VAL A 34 GLN A 39 -1 N GLN A 39 O ASP A 88 SHEET 5 B 5 PRO A 45 THR A 47 -1 O THR A 46 N GLN A 38 SHEET 1 C 4 VAL A 10 GLU A 12 0 SHEET 2 C 4 THR A 106 VAL A 110 1 O LYS A 107 N VAL A 10 SHEET 3 C 4 ALA A 87 TYR A 94 -1 N TYR A 89 O THR A 106 SHEET 4 C 4 VAL A 100 PHE A 102 -1 O VAL A 101 N SER A 93 SSBOND 1 CYS A 22 CYS A 91 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1