HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-FEB-14 2ML6 TITLE NMR STRUCTURE OF PROTEIN ZP_02069618.1 FROM BACTEROIDES UNIFORMIS ATCC TITLE 2 8492 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-170; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS; SOURCE 3 ORGANISM_TAXID: 411479; SOURCE 4 ATCC: 8492; SOURCE 5 GENE: BACUNI_01032; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: SPEEDET KEYWDS GUT MICROBIOME SECRETED PROTEIN, JCSG, PSI-BIOLOGY, STRUCTURAL KEYWDS 2 GENOMICS, UNKNOWN FUNCTION, JOINT CENTER FOR STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.WALLMANN,S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 3 14-JUN-23 2ML6 1 REMARK SEQADV REVDAT 2 04-MAR-15 2ML6 1 JRNL TITLE REVDAT 1 12-MAR-14 2ML6 0 JRNL AUTH A.WALLMANN,S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF PROTEIN ZP_02069618.1 FROM BACTEROIDES JRNL TITL 2 UNIFORMIS ATCC 8492. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPALP REMARK 3 AUTHORS : GUNTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ML6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103747. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 0.03 % SODIUM AZIDE, 50 REMARK 210 MM SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 4D APSY-HACANH; REMARK 210 5D APSY-CBCACONH; 5D APSY- REMARK 210 HACACONH; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TOPSPIN, CARA, J-UNIO, REMARK 210 GAPRO, OPALP REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 68 HH TYR A 92 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 LEU A 29 CB - CG - CD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 5 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 8 TYR A 120 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 9 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 TYR A 120 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 10 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 18 PHE A 122 CB - CG - CD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 17 107.78 174.21 REMARK 500 1 PRO A 28 -175.28 -69.20 REMARK 500 1 LYS A 37 38.53 -78.20 REMARK 500 1 GLU A 41 44.01 -76.56 REMARK 500 1 GLU A 51 3.36 -69.62 REMARK 500 1 LYS A 52 34.59 -149.51 REMARK 500 1 LEU A 61 70.09 -102.84 REMARK 500 1 ALA A 84 -2.43 -150.76 REMARK 500 1 GLU A 94 14.14 47.97 REMARK 500 1 ASP A 123 31.54 -78.25 REMARK 500 1 HIS A 147 70.60 -114.34 REMARK 500 2 ALA A 2 23.06 -148.11 REMARK 500 2 GLU A 3 94.42 -69.08 REMARK 500 2 SER A 23 4.40 -65.47 REMARK 500 2 SER A 31 89.95 -44.81 REMARK 500 2 ASP A 38 8.65 -63.52 REMARK 500 2 LYS A 52 18.91 -159.67 REMARK 500 2 GLU A 70 36.54 -155.99 REMARK 500 2 ASN A 81 58.68 -117.50 REMARK 500 2 ASP A 93 33.68 -79.10 REMARK 500 2 GLU A 94 -1.81 -148.64 REMARK 500 2 ASP A 123 6.49 -69.97 REMARK 500 3 ALA A 2 -163.84 -114.86 REMARK 500 3 SER A 16 40.10 -144.84 REMARK 500 3 SER A 17 106.78 -169.55 REMARK 500 3 LYS A 37 -168.18 -74.35 REMARK 500 3 ASP A 38 26.52 -79.00 REMARK 500 3 LYS A 52 29.28 -145.86 REMARK 500 3 GLU A 94 -14.64 65.86 REMARK 500 3 ARG A 100 63.79 -163.64 REMARK 500 3 TRP A 119 -70.22 40.23 REMARK 500 3 TYR A 120 53.19 -104.00 REMARK 500 4 LYS A 37 -177.65 -67.45 REMARK 500 4 ASP A 38 46.87 -67.20 REMARK 500 4 ASP A 39 15.87 -149.18 REMARK 500 4 GLU A 51 49.80 -76.56 REMARK 500 4 LYS A 52 -6.29 174.60 REMARK 500 4 LEU A 61 59.49 -96.44 REMARK 500 4 HIS A 77 -167.61 -168.09 REMARK 500 4 ASP A 107 18.94 57.58 REMARK 500 4 ASP A 118 28.43 -77.59 REMARK 500 4 ASP A 123 34.33 -85.21 REMARK 500 5 LYS A 37 34.00 -89.91 REMARK 500 5 ASP A 39 49.02 -151.60 REMARK 500 5 GLU A 41 57.82 -91.77 REMARK 500 5 GLU A 51 38.60 -91.11 REMARK 500 5 LYS A 52 36.44 -178.82 REMARK 500 5 LEU A 61 37.35 -81.58 REMARK 500 5 GLU A 94 17.97 54.88 REMARK 500 6 SER A 16 15.40 -143.79 REMARK 500 REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 1 ALA A 2 1 130.87 REMARK 500 ASP A 118 TRP A 119 3 144.01 REMARK 500 GLY A 1 ALA A 2 6 143.75 REMARK 500 GLY A 1 ALA A 2 8 135.10 REMARK 500 ASN A 81 GLU A 82 9 146.29 REMARK 500 GLU A 94 SER A 95 14 147.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 92 0.07 SIDE CHAIN REMARK 500 2 TYR A 116 0.07 SIDE CHAIN REMARK 500 6 ARG A 100 0.10 SIDE CHAIN REMARK 500 11 TYR A 92 0.08 SIDE CHAIN REMARK 500 12 ARG A 50 0.09 SIDE CHAIN REMARK 500 12 ARG A 100 0.09 SIDE CHAIN REMARK 500 14 ARG A 24 0.10 SIDE CHAIN REMARK 500 14 ARG A 65 0.09 SIDE CHAIN REMARK 500 17 TYR A 111 0.07 SIDE CHAIN REMARK 500 19 TYR A 74 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19807 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-417980 RELATED DB: TARGETTRACK DBREF 2ML6 A 2 148 UNP A7V0E7 A7V0E7_BACUN 24 170 SEQADV 2ML6 GLY A 1 UNP A7V0E7 EXPRESSION TAG SEQRES 1 A 148 GLY ALA GLU GLU GLU ASP PHE LYS THR PHE LEU GLN LYS SEQRES 2 A 148 PHE THR SER SER ALA SER PHE GLN TYR SER ARG ILE LYS SEQRES 3 A 148 PHE PRO LEU LYS SER PRO ILE ALA LEU LEU LYS ASP ASP SEQRES 4 A 148 GLY GLU THR GLU GLN THR PHE PRO PHE THR ARG GLU LYS SEQRES 5 A 148 TRP ALA LEU LEU ASP GLU GLU THR LEU LYS GLU GLY ARG SEQRES 6 A 148 THR THR GLU GLU GLU GLY GLY THR TYR ILE SER HIS PHE SEQRES 7 A 148 THR VAL ASN GLU PRO ALA HIS LYS GLU PHE GLU ALA GLY SEQRES 8 A 148 TYR ASP GLU SER GLU PRO SER LEU ARG VAL VAL PHE GLU SEQRES 9 A 148 LEU THR ASP GLY LYS TRP TYR VAL THR ASP CYS TYR ASN SEQRES 10 A 148 ASP TRP TYR ASN PHE ASP LEU PRO ILE ASN GLU LEU GLU SEQRES 11 A 148 GLU THR ILE GLN ALA VAL GLN GLU GLU ASN LYS ALA PHE SEQRES 12 A 148 GLU GLU LEU HIS PRO HELIX 1 1 LYS A 8 SER A 16 1 9 HELIX 2 2 SER A 17 ARG A 24 1 8 HELIX 3 3 THR A 49 TRP A 53 5 5 HELIX 4 4 ASN A 117 ASN A 121 5 5 HELIX 5 5 PRO A 125 GLU A 145 1 21 SHEET 1 A 5 GLY A 64 THR A 67 0 SHEET 2 A 5 THR A 73 PHE A 78 -1 O TYR A 74 N THR A 66 SHEET 3 A 5 GLU A 87 TYR A 92 -1 O GLY A 91 N ILE A 75 SHEET 4 A 5 PRO A 97 THR A 106 -1 O SER A 98 N ALA A 90 SHEET 5 A 5 LYS A 109 VAL A 112 -1 O LYS A 109 N THR A 106 CISPEP 1 PHE A 27 PRO A 28 1 -11.77 CISPEP 2 PHE A 27 PRO A 28 2 -3.75 CISPEP 3 PHE A 27 PRO A 28 3 -17.00 CISPEP 4 PHE A 27 PRO A 28 4 -13.85 CISPEP 5 PHE A 27 PRO A 28 5 -6.71 CISPEP 6 PHE A 27 PRO A 28 6 -18.25 CISPEP 7 PHE A 27 PRO A 28 7 -18.51 CISPEP 8 PHE A 27 PRO A 28 8 -10.84 CISPEP 9 PHE A 27 PRO A 28 9 -13.37 CISPEP 10 PHE A 27 PRO A 28 10 -19.12 CISPEP 11 PHE A 27 PRO A 28 11 -4.07 CISPEP 12 PHE A 27 PRO A 28 12 -19.12 CISPEP 13 PHE A 27 PRO A 28 13 -11.45 CISPEP 14 PHE A 27 PRO A 28 14 -10.63 CISPEP 15 PHE A 27 PRO A 28 15 -9.38 CISPEP 16 PHE A 27 PRO A 28 16 -14.25 CISPEP 17 PHE A 27 PRO A 28 17 -8.04 CISPEP 18 PHE A 27 PRO A 28 18 -10.11 CISPEP 19 PHE A 27 PRO A 28 19 -4.73 CISPEP 20 PHE A 27 PRO A 28 20 -27.22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1