HEADER UNKNOWN FUNCTION 20-FEB-14 2ML7 TITLE GINSENTIDES: CHARACTERIZATION, STRUCTURE AND APPLICATION OF A NEW TITLE 2 CLASS OF HIGHLY STABLE CYSTINE KNOT PEPTIDES IN GINSENG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECIFIC ABUNDANT PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 91-121 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PANAX GINSENG; SOURCE 3 ORGANISM_COMMON: KOREAN GINSENG; SOURCE 4 ORGANISM_TAXID: 4054 KEYWDS GINSENTIDE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.WANG,K.NGUYEN,S.LUO,J.TAM,D.YANG REVDAT 2 14-JUN-23 2ML7 1 REMARK REVDAT 1 04-MAR-15 2ML7 0 JRNL AUTH S.WANG,K.NGUYEN,S.LUO,J.TAM,D.YANG JRNL TITL GINSENTIDES: CHARACTERIZATION, STRUCTURE AND APPLICATION OF JRNL TITL 2 A NEW CLASS OF HIGHLY STABLE CYSTINE KNOT PEPTIDES IN JRNL TITL 3 GINSENG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA, PROCHECKNMR REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA), LASKOWSKI AND MACARTHUR REMARK 3 (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ML7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103748. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 95 % H2O-1, 5 % D2O-2, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CYANA, NMRSPY, REMARK 210 MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 8 -69.14 -131.20 REMARK 500 1 VAL A 23 20.45 -142.83 REMARK 500 1 THR A 29 29.72 -150.33 REMARK 500 2 CYS A 8 -70.45 -131.19 REMARK 500 2 VAL A 23 22.80 -143.92 REMARK 500 2 THR A 29 29.55 -150.38 REMARK 500 3 LYS A 2 -169.03 -67.80 REMARK 500 3 CYS A 8 -74.14 -130.19 REMARK 500 3 ASP A 11 77.22 -112.40 REMARK 500 3 ASN A 18 48.51 -88.67 REMARK 500 3 VAL A 23 24.88 -145.00 REMARK 500 3 THR A 29 31.24 -150.28 REMARK 500 4 CYS A 8 -69.95 -131.35 REMARK 500 4 ASN A 18 41.08 -88.90 REMARK 500 4 VAL A 23 18.88 -145.31 REMARK 500 4 THR A 29 32.79 -150.90 REMARK 500 5 LYS A 2 -168.66 -72.05 REMARK 500 5 CYS A 8 -76.23 -129.50 REMARK 500 5 ASP A 11 76.14 -116.03 REMARK 500 5 HIS A 13 24.14 -144.33 REMARK 500 5 CYS A 15 -170.45 49.93 REMARK 500 5 ASN A 18 47.80 -88.96 REMARK 500 5 VAL A 23 28.85 -144.89 REMARK 500 5 THR A 29 30.67 -150.14 REMARK 500 6 CYS A 8 -73.04 -128.48 REMARK 500 6 ASN A 18 48.58 -89.30 REMARK 500 6 THR A 29 36.89 -150.82 REMARK 500 7 LYS A 2 -167.96 -66.48 REMARK 500 7 CYS A 8 -75.95 -128.23 REMARK 500 7 ASP A 11 76.52 -114.43 REMARK 500 7 HIS A 13 23.26 -144.90 REMARK 500 7 CYS A 15 -171.20 50.29 REMARK 500 7 ASN A 18 46.36 -89.03 REMARK 500 7 VAL A 23 28.28 -148.01 REMARK 500 7 THR A 29 29.27 -150.36 REMARK 500 8 LYS A 2 -168.80 -74.18 REMARK 500 8 CYS A 8 -76.11 -129.19 REMARK 500 8 ASP A 11 76.89 -112.73 REMARK 500 8 HIS A 13 23.57 -144.45 REMARK 500 8 CYS A 15 -170.16 49.99 REMARK 500 8 ASN A 18 43.41 -89.40 REMARK 500 8 VAL A 23 30.83 -147.29 REMARK 500 8 THR A 29 30.87 -151.17 REMARK 500 9 CYS A 8 -81.11 -126.88 REMARK 500 9 ASN A 18 46.23 -88.79 REMARK 500 9 THR A 29 31.08 -150.36 REMARK 500 10 LYS A 2 -168.20 -76.15 REMARK 500 10 ASP A 11 75.47 -112.53 REMARK 500 10 HIS A 13 21.75 -142.18 REMARK 500 10 CYS A 15 -171.77 51.07 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19808 RELATED DB: BMRB DBREF 2ML7 A 1 31 UNP A0PGP7 A0PGP7_PANGI 91 121 SEQRES 1 A 31 CYS LYS SER GLY GLY ALA TRP CYS GLY PHE ASP PRO HIS SEQRES 2 A 31 GLY CYS CYS GLY ASN CYS GLY CYS LEU VAL GLY PHE CYS SEQRES 3 A 31 TYR GLY THR GLY CYS SHEET 1 A 2 GLY A 20 CYS A 21 0 SHEET 2 A 2 CYS A 26 TYR A 27 -1 O TYR A 27 N GLY A 20 SSBOND 1 CYS A 1 CYS A 16 1555 1555 1.98 SSBOND 2 CYS A 8 CYS A 21 1555 1555 1.91 SSBOND 3 CYS A 15 CYS A 26 1555 1555 1.91 SSBOND 4 CYS A 19 CYS A 31 1555 1555 1.97 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1