HEADER CHAPERONE 05-MAR-14 2MLX TITLE NMR STRUCTURE OF E. COLI TRIGGER FACTOR IN COMPLEX WITH UNFOLDED TITLE 2 PHOA220-310 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIGGER FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TF, PPIASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALKALINE PHOSPHATASE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1403831; SOURCE 4 GENE: TIG, BN896_0318; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PCOLD; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 1403831; SOURCE 12 GENE: PHOA, BN896_0267; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET16B KEYWDS MOLECULAR CHAPERONE, UNFOLDED PROTEIN, PROTEIN COMPLEX, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.SAIO,X.GUAN,P.ROSSI,A.ECONOMOU,C.G.KALODIMOS REVDAT 2 01-MAY-24 2MLX 1 REMARK SEQADV REVDAT 1 21-MAY-14 2MLX 0 JRNL AUTH T.SAIO,X.GUAN,P.ROSSI,A.ECONOMOU,C.G.KALODIMOS JRNL TITL STRUCTURAL BASIS FOR PROTEIN ANTIAGGREGATION ACTIVITY OF THE JRNL TITL 2 TRIGGER FACTOR CHAPERONE. JRNL REF SCIENCE V. 344 50494 2014 JRNL REFN ISSN 0036-8075 JRNL PMID 24812405 JRNL DOI 10.1126/SCIENCE.1250494 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000103771. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 ALKALINE PHOSPHATASE, 0.5 MM [U- REMARK 210 100% 13C; U-100% 15N] TRIGGER REMARK 210 FACTOR, 100 MM POTASSIUM REMARK 210 CHLORIDE, 3 MM BME, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY; 3D 1H-15N NOESY; REMARK 210 3D HNCACB; 3D 1H-13C HMQC-NOESY; REMARK 210 2D 1H-13C HMQC; 3D HCCH-TOCSY; REMARK 210 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, OLIVIA 1.16, CYANA REMARK 210 3.0, TOPSPIN 3.1, VNMRJ, X-PLOR REMARK 210 NIH, TALOSN, PSVS 1.5 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ASN A -9 REMARK 465 HIS A -8 REMARK 465 LYS A -7 REMARK 465 VAL A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS B 218 REMARK 465 MET B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 5 28.48 -143.17 REMARK 500 1 GLU A 6 88.82 -53.52 REMARK 500 1 THR A 18 78.06 -104.94 REMARK 500 1 LYS A 181 119.63 -161.25 REMARK 500 1 ARG A 193 -36.44 -132.56 REMARK 500 1 ALA A 207 -61.18 -145.21 REMARK 500 1 LYS A 238 -72.08 -101.80 REMARK 500 1 LEU A 248 33.99 -141.09 REMARK 500 1 MET A 374 -70.09 -66.70 REMARK 500 1 ASN A 429 43.74 -82.70 REMARK 500 1 GLN A 431 -65.67 -92.45 REMARK 500 1 ARG B 221 -79.99 -84.70 REMARK 500 1 ALA B 222 88.59 -178.21 REMARK 500 1 ALA B 237 -64.75 70.69 REMARK 500 1 TRP B 242 19.78 -167.93 REMARK 500 1 LYS B 245 47.77 -144.38 REMARK 500 1 THR B 246 -55.71 77.23 REMARK 500 1 TYR B 256 -76.62 60.10 REMARK 500 1 VAL B 259 89.13 41.83 REMARK 500 1 SER B 260 -89.28 -91.87 REMARK 500 1 ASP B 261 163.01 60.59 REMARK 500 1 ALA B 263 -84.04 -108.52 REMARK 500 1 SER B 264 40.91 -175.16 REMARK 500 1 LEU B 265 97.15 69.37 REMARK 500 1 SER B 267 13.19 -140.73 REMARK 500 1 GLN B 273 89.33 -153.32 REMARK 500 1 PRO B 276 87.97 -69.71 REMARK 500 1 ALA B 282 -77.77 68.77 REMARK 500 1 ASN B 285 -32.27 76.48 REMARK 500 1 MET B 286 -57.70 105.21 REMARK 500 1 VAL B 288 89.78 -55.30 REMARK 500 1 ARG B 289 -68.44 -168.72 REMARK 500 1 TRP B 290 -166.54 43.66 REMARK 500 1 LEU B 291 -148.08 56.39 REMARK 500 1 ALA B 295 -58.97 -138.87 REMARK 500 1 THR B 296 -171.37 62.10 REMARK 500 1 TYR B 297 -88.18 69.07 REMARK 500 1 HIS B 298 -76.39 61.03 REMARK 500 1 PRO B 304 74.16 -68.09 REMARK 500 1 ALA B 305 74.78 -159.91 REMARK 500 2 THR A 7 92.27 -69.19 REMARK 500 2 ARG A 57 -75.29 -98.72 REMARK 500 2 LEU A 99 98.20 -61.83 REMARK 500 2 PHE A 177 -166.44 -119.98 REMARK 500 2 LYS A 206 -64.63 -120.90 REMARK 500 2 ALA A 207 -60.47 -148.09 REMARK 500 2 PRO A 246 -169.19 -70.73 REMARK 500 2 ALA A 362 95.97 -67.86 REMARK 500 2 ASN A 429 47.99 -83.15 REMARK 500 2 ARG B 221 -79.04 67.13 REMARK 500 REMARK 500 THIS ENTRY HAS 389 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 289 TRP B 290 3 -142.83 REMARK 500 ILE A 166 ASP A 167 5 149.94 REMARK 500 ARG B 289 TRP B 290 9 -141.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MLY RELATED DB: PDB REMARK 900 RELATED ID: 2MLZ RELATED DB: PDB REMARK 900 RELATED ID: 19835 RELATED DB: BMRB DBREF 2MLX A 1 432 UNP U6N325 U6N325_ECOLI 1 432 DBREF 2MLX B 220 310 UNP U6N3P1 U6N3P1_ECOLI 220 310 SEQADV 2MLX MET A -10 UNP U6N325 EXPRESSION TAG SEQADV 2MLX ASN A -9 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A -8 UNP U6N325 EXPRESSION TAG SEQADV 2MLX LYS A -7 UNP U6N325 EXPRESSION TAG SEQADV 2MLX VAL A -6 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A -5 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A -4 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A -3 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A -2 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A -1 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS A 0 UNP U6N325 EXPRESSION TAG SEQADV 2MLX HIS B 218 UNP U6N3P1 EXPRESSION TAG SEQADV 2MLX MET B 219 UNP U6N3P1 EXPRESSION TAG SEQRES 1 A 443 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS MET GLN SEQRES 2 A 443 VAL SER VAL GLU THR THR GLN GLY LEU GLY ARG ARG VAL SEQRES 3 A 443 THR ILE THR ILE ALA ALA ASP SER ILE GLU THR ALA VAL SEQRES 4 A 443 LYS SER GLU LEU VAL ASN VAL ALA LYS LYS VAL ARG ILE SEQRES 5 A 443 ASP GLY PHE ARG LYS GLY LYS VAL PRO MET ASN ILE VAL SEQRES 6 A 443 ALA GLN ARG TYR GLY ALA SER VAL ARG GLN ASP VAL LEU SEQRES 7 A 443 GLY ASP LEU MET SER ARG ASN PHE ILE ASP ALA ILE ILE SEQRES 8 A 443 LYS GLU LYS ILE ASN PRO ALA GLY ALA PRO THR TYR VAL SEQRES 9 A 443 PRO GLY GLU TYR LYS LEU GLY GLU ASP PHE THR TYR SER SEQRES 10 A 443 VAL GLU PHE GLU VAL TYR PRO GLU VAL GLU LEU GLN GLY SEQRES 11 A 443 LEU GLU ALA ILE GLU VAL GLU LYS PRO ILE VAL GLU VAL SEQRES 12 A 443 THR ASP ALA ASP VAL ASP GLY MET LEU ASP THR LEU ARG SEQRES 13 A 443 LYS GLN GLN ALA THR TRP LYS GLU LYS ASP GLY ALA VAL SEQRES 14 A 443 GLU ALA GLU ASP ARG VAL THR ILE ASP PHE THR GLY SER SEQRES 15 A 443 VAL ASP GLY GLU GLU PHE GLU GLY GLY LYS ALA SER ASP SEQRES 16 A 443 PHE VAL LEU ALA MET GLY GLN GLY ARG MET ILE PRO GLY SEQRES 17 A 443 PHE GLU ASP GLY ILE LYS GLY HIS LYS ALA GLY GLU GLU SEQRES 18 A 443 PHE THR ILE ASP VAL THR PHE PRO GLU GLU TYR HIS ALA SEQRES 19 A 443 GLU ASN LEU LYS GLY LYS ALA ALA LYS PHE ALA ILE ASN SEQRES 20 A 443 LEU LYS LYS VAL GLU GLU ARG GLU LEU PRO GLU LEU THR SEQRES 21 A 443 ALA GLU PHE ILE LYS ARG PHE GLY VAL GLU ASP GLY SER SEQRES 22 A 443 VAL GLU GLY LEU ARG ALA GLU VAL ARG LYS ASN MET GLU SEQRES 23 A 443 ARG GLU LEU LYS SER ALA ILE ARG ASN ARG VAL LYS SER SEQRES 24 A 443 GLN ALA ILE GLU GLY LEU VAL LYS ALA ASN ASP ILE ASP SEQRES 25 A 443 VAL PRO ALA ALA LEU ILE ASP SER GLU ILE ASP VAL LEU SEQRES 26 A 443 ARG ARG GLN ALA ALA GLN ARG PHE GLY GLY ASN GLU LYS SEQRES 27 A 443 GLN ALA LEU GLU LEU PRO ARG GLU LEU PHE GLU GLU GLN SEQRES 28 A 443 ALA LYS ARG ARG VAL VAL VAL GLY LEU LEU LEU GLY GLU SEQRES 29 A 443 VAL ILE ARG THR ASN GLU LEU LYS ALA ASP GLU GLU ARG SEQRES 30 A 443 VAL LYS GLY LEU ILE GLU GLU MET ALA SER ALA TYR GLU SEQRES 31 A 443 ASP PRO LYS GLU VAL ILE GLU PHE TYR SER LYS ASN LYS SEQRES 32 A 443 GLU LEU MET ASP ASN MET ARG ASN VAL ALA LEU GLU GLU SEQRES 33 A 443 GLN ALA VAL GLU ALA VAL LEU ALA LYS ALA LYS VAL THR SEQRES 34 A 443 GLU LYS GLU THR THR PHE ASN GLU LEU MET ASN GLN GLN SEQRES 35 A 443 ALA SEQRES 1 B 93 HIS MET ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 2 B 93 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 3 B 93 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 4 B 93 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 5 B 93 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 6 B 93 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 7 B 93 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 8 B 93 THR PRO HELIX 1 1 ALA A 20 VAL A 39 1 20 HELIX 2 2 ARG A 40 PHE A 44 5 5 HELIX 3 3 PRO A 50 ARG A 57 1 8 HELIX 4 4 TYR A 58 ALA A 60 5 3 HELIX 5 5 SER A 61 VAL A 66 1 6 HELIX 6 6 VAL A 66 GLU A 82 1 17 HELIX 7 7 THR A 133 GLN A 148 1 16 HELIX 8 8 GLY A 197 GLY A 204 1 8 HELIX 9 9 THR A 249 LYS A 254 1 6 HELIX 10 10 ARG A 255 GLY A 257 5 3 HELIX 11 11 SER A 262 ALA A 297 1 36 HELIX 12 12 PRO A 303 GLY A 323 1 21 HELIX 13 13 LYS A 327 PRO A 333 5 7 HELIX 14 14 ARG A 334 ASN A 358 1 25 HELIX 15 15 ASP A 363 SER A 376 1 14 HELIX 16 16 ASP A 380 ASN A 391 1 12 HELIX 17 17 ASN A 391 ALA A 413 1 23 HELIX 18 18 PHE A 424 ASN A 429 1 6 HELIX 19 19 ARG B 248 ALA B 253 1 6 SHEET 1 A 4 GLU A 6 GLN A 9 0 SHEET 2 A 4 GLY A 12 ILE A 19 -1 O ARG A 14 N GLU A 6 SHEET 3 A 4 PHE A 103 VAL A 111 -1 O PHE A 109 N ARG A 13 SHEET 4 A 4 PRO A 86 GLU A 96 -1 N THR A 91 O GLU A 108 SHEET 1 B 2 GLU A 124 GLU A 131 0 SHEET 2 B 2 LYS A 416 THR A 423 1 O LYS A 420 N ILE A 129 SHEET 1 C 4 THR A 150 LYS A 154 0 SHEET 2 C 4 ALA A 230 GLU A 244 -1 O GLU A 242 N LYS A 152 SHEET 3 C 4 ARG A 163 VAL A 172 -1 N THR A 169 O ALA A 234 SHEET 4 C 4 LYS A 181 ALA A 188 -1 O PHE A 185 N ILE A 166 SHEET 1 D 3 THR A 150 LYS A 154 0 SHEET 2 D 3 ALA A 230 GLU A 244 -1 O GLU A 242 N LYS A 152 SHEET 3 D 3 GLU A 210 THR A 216 -1 N VAL A 215 O ALA A 231 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1