HEADER    DNA                                     14-MAR-14   2MMF              
TITLE     SOLUTION STRUCTURE OF AGA MODIFIED                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*AP*TP*TP*CP*A)-3');          
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: DNA_(5'-D(*TP*GP*AP*AP*TP*CP*TP*TP*AP*G)-3');              
COMPND   7 CHAIN: B;                                                            
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 MOL_ID: 2;                                                           
SOURCE   4 SYNTHETIC: YES                                                       
KEYWDS    AFLATOXIN B1, FAPY, FORMAMIDOPYRIMIDINE, INTERCALATION, DNA DUPLEX,   
KEYWDS   2 DNA ADDUCT, SEQUENCE DEPENDENCE, DNA                                 
EXPDTA    SOLUTION NMR                                                          
AUTHOR    L.LI,M.STONE                                                          
REVDAT   3   01-MAY-24 2MMF    1       REMARK LINK                              
REVDAT   2   23-DEC-15 2MMF    1       JRNL                                     
REVDAT   1   25-FEB-15 2MMF    0                                                
JRNL        AUTH   L.LI,K.L.BROWN,R.MA,M.P.STONE                                
JRNL        TITL   DNA SEQUENCE MODULATES GEOMETRICAL ISOMERISM OF THE          
JRNL        TITL 2 TRANS-8,9-DIHYDRO-8-(2,6-DIAMINO-4-OXO-3,                    
JRNL        TITL 3 4-DIHYDROPYRIMID-5-YL-FORMAMIDO)-9-HYDROXY AFLATOXIN B1      
JRNL        TITL 4 ADDUCT.                                                      
JRNL        REF    CHEM.RES.TOXICOL.             V.  28   225 2015              
JRNL        REFN                   ISSN 0893-228X                               
JRNL        PMID   25587868                                                     
JRNL        DOI    10.1021/TX5003832                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : TOPSPIN, AMBER 12                                    
REMARK   3   AUTHORS     : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM,    
REMARK   3                 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN    
REMARK   3                 (AMBER)                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2MMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000103788.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 283                                
REMARK 210  PH                             : 7                                  
REMARK 210  IONIC STRENGTH                 : 0.1                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.5 MM DNA (5'                     
REMARK 210  -D(*CP*TP*AP*AP*(FAG)P*AP*TP*TP*CP*A)-3'), 0.5 MM DNA (5'-D(*TP*    
REMARK 210  GP*AP*AP*TP*CP*TP*TP*AP*G)-3'), 100% D2O                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-1H COSY; 2D 1H-1H NOESY      
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ; 900 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : DGSA-DISTANCE GEOMETRY SIMULATED   
REMARK 210                                   ANNEALING                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 10                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : BACK CALCULATED DATA AGREE WITH    
REMARK 210                                   EXPERIMENTAL NOESY SPECTRUM        
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DA A   3   C5'    DA A   3   C4'     0.045                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DC A   1   O4' -  C1' -  N1  ANGL. DEV. =   2.7 DEGREES          
REMARK 500     DC A   1   N1  -  C2  -  O2  ANGL. DEV. =   4.0 DEGREES          
REMARK 500     DC A   1   N3  -  C2  -  O2  ANGL. DEV. =  -5.4 DEGREES          
REMARK 500     DT A   2   N3  -  C2  -  O2  ANGL. DEV. =  -3.6 DEGREES          
REMARK 500     DT A   2   C6  -  C5  -  C7  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500     DA A   3   C4  -  C5  -  C6  ANGL. DEV. =  -3.4 DEGREES          
REMARK 500     DA A   4   C5  -  C6  -  N1  ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DA A   4   N1  -  C6  -  N6  ANGL. DEV. =  -4.9 DEGREES          
REMARK 500     DA A   6   O4' -  C1' -  N9  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DA A   6   C4  -  C5  -  C6  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500     DA A   6   C5  -  C6  -  N1  ANGL. DEV. =   4.1 DEGREES          
REMARK 500     DA A   6   N1  -  C6  -  N6  ANGL. DEV. =  -4.3 DEGREES          
REMARK 500     DT A   7   C4  -  C5  -  C6  ANGL. DEV. =   3.8 DEGREES          
REMARK 500     DT A   7   N3  -  C2  -  O2  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500     DT A   7   C6  -  C5  -  C7  ANGL. DEV. =  -4.4 DEGREES          
REMARK 500     DC A   9   O4' -  C4' -  C3' ANGL. DEV. =   3.8 DEGREES          
REMARK 500     DC A   9   N1  -  C2  -  O2  ANGL. DEV. =   4.5 DEGREES          
REMARK 500     DC A   9   N3  -  C2  -  O2  ANGL. DEV. =  -5.9 DEGREES          
REMARK 500     DA A  10   O4' -  C1' -  N9  ANGL. DEV. =   3.0 DEGREES          
REMARK 500     DA A  10   C4  -  C5  -  C6  ANGL. DEV. =  -3.1 DEGREES          
REMARK 500     DA A  10   C5  -  C6  -  N1  ANGL. DEV. =   4.1 DEGREES          
REMARK 500     DA A  10   N1  -  C6  -  N6  ANGL. DEV. =  -6.6 DEGREES          
REMARK 500     DT B  11   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DG B  12   O4' -  C1' -  N9  ANGL. DEV. =   4.8 DEGREES          
REMARK 500     DG B  12   N1  -  C6  -  O6  ANGL. DEV. =  -4.1 DEGREES          
REMARK 500     DA B  13   C4  -  C5  -  C6  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500     DA B  13   C5  -  C6  -  N1  ANGL. DEV. =   3.5 DEGREES          
REMARK 500     DA B  13   N1  -  C6  -  N6  ANGL. DEV. =  -5.8 DEGREES          
REMARK 500     DA B  14   C4  -  C5  -  C6  ANGL. DEV. =  -3.2 DEGREES          
REMARK 500     DA B  14   N1  -  C6  -  N6  ANGL. DEV. =  -4.4 DEGREES          
REMARK 500     DT B  15   O4' -  C1' -  N1  ANGL. DEV. =   5.2 DEGREES          
REMARK 500     DT B  17   O4' -  C1' -  N1  ANGL. DEV. =   4.5 DEGREES          
REMARK 500     DT B  17   C4  -  C5  -  C6  ANGL. DEV. =   3.9 DEGREES          
REMARK 500     DT B  17   C5  -  C6  -  N1  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500     DT B  18   O4' -  C1' -  N1  ANGL. DEV. =   6.8 DEGREES          
REMARK 500     DA B  19   C5  -  C6  -  N1  ANGL. DEV. =   3.7 DEGREES          
REMARK 500     DA B  19   N1  -  C6  -  N6  ANGL. DEV. =  -5.0 DEGREES          
REMARK 500     DG B  20   O4' -  C1' -  N9  ANGL. DEV. =   3.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 19853   RELATED DB: BMRB                                 
DBREF  2MMF A    1    10  PDB    2MMF     2MMF             1     10             
DBREF  2MMF B   11    20  PDB    2MMF     2MMF            11     20             
SEQRES   1 A   10   DC  DT  DA  DA FAG  DA  DT  DT  DC  DA                      
SEQRES   1 B   10   DT  DG  DA  DA  DT  DC  DT  DT  DA  DG                      
HET    FAG  A   5      72                                                       
HETNAM     FAG [1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-          
HETNAM   2 FAG  FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-            
HETNAM   3 FAG  RIBOFURANOSE]-5-MONOPHOSPHATE GROUP                             
FORMUL   1  FAG    C27 H28 N5 O15 P                                             
LINK         O3'  DA A   4                 P   FAG A   5     1555   1555  1.62  
LINK         O3' FAG A   5                 P    DA A   6     1555   1555  1.61  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000