data_2MMS # _entry.id 2MMS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB103801 RCSB ? ? 2MMS PDB pdb_00002mms 10.2210/pdb2mms/pdb 19863 BMRB ? 10.13018/BMR19863 D_1000103801 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-25 2 'Structure model' 1 1 2015-12-23 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MMS _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-03-17 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_id 19863 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, L.' 1 'Stone, M.' 2 # _citation.id primary _citation.title ;DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. ; _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 28 _citation.page_first 225 _citation.page_last 237 _citation.year 2015 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25587868 _citation.pdbx_database_id_DOI 10.1021/tx5003832 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, L.' 1 ? primary 'Brown, K.L.' 2 ? primary 'Ma, R.' 3 ? primary 'Stone, M.P.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3')" 3389.317 1 ? ? ? ? 2 polymer syn "DNA_(5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3')" 3044.017 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(DA)(FAG)(7GU)(DT)(DT)(DC)(DA)' CTAANGTTCA A ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DA)(DA)(DC)(DC)(DT)(DT)(DA)(DG)' TGAACCTTAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 DA n 1 5 FAG n 1 6 7GU n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DA n 2 1 DT n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DC n 2 6 DC n 2 7 DT n 2 8 DT n 2 9 DA n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 7GU 'DNA linking' n "7-DEAZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H15 N4 O7 P' 346.233 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FAG 'DNA linking' . ;[1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-RIBOFURANOSE]-5-MONOPHOSPHATE GROUP ; ? 'C27 H28 N5 O15 P' 693.509 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 FAG 5 5 5 FAG FAG A . n A 1 6 7GU 6 6 6 7GU 7GU A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DA 10 10 10 DA DA A . n B 2 1 DT 1 11 11 DT DT B . n B 2 2 DG 2 12 12 DG DG B . n B 2 3 DA 3 13 13 DA DA B . n B 2 4 DA 4 14 14 DA DA B . n B 2 5 DC 5 15 15 DC DC B . n B 2 6 DC 6 16 16 DC DC B . n B 2 7 DT 7 17 17 DT DT B . n B 2 8 DT 8 18 18 DT DT B . n B 2 9 DA 9 19 19 DA DA B . n B 2 10 DG 10 20 20 DG DG B . n # _cell.entry_id 2MMS _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MMS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MMS _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MMS _struct.title 'AG(7-deaza)G FAPY modified duplex' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MMS _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;Aflatoxin B1, FAPY, FORMAMIDOPYRIMIDINE, INTERCALATION, DNA ADDUCT, DEOXYRIBONUCLEIC ACID, HYDROGEN BOND, SEQUENCE DEPENDENCE, AG(7-deaza)G, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2MMS 2MMS 1 ? ? ? 2 PDB 2MMS 2MMS 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MMS A 1 ? 10 ? 2MMS 1 ? 10 ? 1 10 2 2 2MMS B 1 ? 10 ? 2MMS 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 4 "O3'" ? ? ? 1_555 A FAG 5 P ? ? A DA 4 A FAG 5 1_555 ? ? ? ? ? ? ? 1.650 ? ? covale2 covale one ? A FAG 5 "O3'" ? ? ? 1_555 A 7GU 6 P ? ? A FAG 5 A 7GU 6 1_555 ? ? ? ? ? ? ? 1.643 ? ? covale3 covale both ? A 7GU 6 "O3'" ? ? ? 1_555 A DT 7 P ? ? A 7GU 6 A DT 7 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? 1.577 1.512 0.065 0.007 N 2 1 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.536 1.496 0.040 0.006 N 3 1 "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 1.556 1.512 0.044 0.007 N 4 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.425 1.388 0.037 0.006 N 5 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.567 1.512 0.055 0.007 N 6 1 N3 A DA 4 ? ? C4 A DA 4 ? ? 1.385 1.344 0.041 0.006 N 7 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.385 1.339 0.046 0.007 N 8 1 "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.581 1.512 0.069 0.007 N 9 1 "C5'" B DT 11 ? ? "C4'" B DT 11 ? ? 1.570 1.512 0.058 0.007 N 10 1 N1 B DT 11 ? ? C2 B DT 11 ? ? 1.425 1.376 0.049 0.008 N 11 1 C5 B DT 11 ? ? C7 B DT 11 ? ? 1.539 1.496 0.043 0.006 N 12 1 "C2'" B DA 13 ? ? "C1'" B DA 13 ? ? 1.579 1.519 0.060 0.010 N 13 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.555 1.512 0.043 0.007 N 14 1 C5 B DC 16 ? ? C6 B DC 16 ? ? 1.396 1.339 0.057 0.008 N 15 1 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.545 1.496 0.049 0.006 N 16 1 C5 B DT 18 ? ? C7 B DT 18 ? ? 1.562 1.496 0.066 0.006 N 17 1 "C5'" B DG 20 ? ? "C4'" B DG 20 ? ? 1.565 1.512 0.053 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 115.17 108.30 6.87 0.30 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 125.03 118.90 6.13 0.60 N 3 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.50 121.90 -6.40 0.70 N 4 1 "O4'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 110.29 106.00 4.29 0.60 N 5 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.18 108.30 1.88 0.30 N 6 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 113.89 110.60 3.29 0.50 N 7 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 121.76 117.70 4.06 0.50 N 8 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 111.58 118.60 -7.02 0.60 N 9 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 103.70 108.00 -4.30 0.70 N 10 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 123.21 117.70 5.51 0.50 N 11 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 111.69 118.60 -6.91 0.60 N 12 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 121.76 118.00 3.76 0.60 N 13 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 119.99 123.70 -3.71 0.60 N 14 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.33 122.90 -5.57 0.60 N 15 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 127.83 119.70 8.13 1.20 Y 16 1 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 110.20 106.00 4.20 0.60 N 17 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 95.23 102.20 -6.97 0.70 N 18 1 C2 A DC 9 ? ? N3 A DC 9 ? ? C4 A DC 9 ? ? 115.83 119.90 -4.07 0.50 N 19 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 126.80 121.90 4.90 0.40 N 20 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.74 118.90 4.84 0.60 N 21 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 115.65 121.90 -6.25 0.70 N 22 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.31 108.30 2.01 0.30 N 23 1 N1 A DA 10 ? ? C2 A DA 10 ? ? N3 A DA 10 ? ? 125.03 129.30 -4.27 0.50 N 24 1 C2 A DA 10 ? ? N3 A DA 10 ? ? C4 A DA 10 ? ? 114.41 110.60 3.81 0.50 N 25 1 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 112.33 117.00 -4.67 0.50 N 26 1 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.27 117.70 3.57 0.50 N 27 1 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 111.50 118.60 -7.10 0.60 N 28 1 C4 B DT 11 ? ? C5 B DT 11 ? ? C6 B DT 11 ? ? 121.75 118.00 3.75 0.60 N 29 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 117.27 122.90 -5.63 0.60 N 30 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.64 108.30 2.34 0.30 N 31 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N3 B DG 12 ? ? 129.90 123.90 6.00 0.60 N 32 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 117.22 113.10 4.12 0.50 N 33 1 "O4'" B DA 13 ? ? "C4'" B DA 13 ? ? "C3'" B DA 13 ? ? 112.64 106.00 6.64 0.60 N 34 1 C4 B DA 13 ? ? C5 B DA 13 ? ? C6 B DA 13 ? ? 113.74 117.00 -3.26 0.50 N 35 1 N1 B DA 13 ? ? C6 B DA 13 ? ? N6 B DA 13 ? ? 111.47 118.60 -7.13 0.60 N 36 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? "C2'" B DA 14 ? ? 110.29 106.80 3.49 0.50 N 37 1 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 111.82 117.00 -5.18 0.50 N 38 1 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.92 117.70 4.22 0.50 N 39 1 C6 B DA 14 ? ? C5 B DA 14 ? ? N7 B DA 14 ? ? 137.72 132.30 5.42 0.70 N 40 1 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 113.08 118.60 -5.52 0.60 N 41 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.60 108.30 2.30 0.30 N 42 1 C6 B DC 15 ? ? N1 B DC 15 ? ? C2 B DC 15 ? ? 116.90 120.30 -3.40 0.40 N 43 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 117.16 121.90 -4.74 0.70 N 44 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.74 108.30 3.44 0.30 N 45 1 N1 B DC 16 ? ? C2 B DC 16 ? ? N3 B DC 16 ? ? 123.60 119.20 4.40 0.70 N 46 1 C2 B DC 16 ? ? N3 B DC 16 ? ? C4 B DC 16 ? ? 115.43 119.90 -4.47 0.50 N 47 1 N3 B DC 16 ? ? C4 B DC 16 ? ? C5 B DC 16 ? ? 125.75 121.90 3.85 0.40 N 48 1 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 122.54 118.90 3.64 0.60 N 49 1 N3 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 113.41 121.90 -8.49 0.70 N 50 1 N3 B DC 16 ? ? C4 B DC 16 ? ? N4 B DC 16 ? ? 109.42 118.00 -8.58 0.70 N 51 1 C5 B DC 16 ? ? C4 B DC 16 ? ? N4 B DC 16 ? ? 124.63 120.20 4.43 0.70 N 52 1 N3 B DT 17 ? ? C2 B DT 17 ? ? O2 B DT 17 ? ? 117.70 122.30 -4.60 0.60 N 53 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.03 108.30 2.73 0.30 N 54 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 113.26 108.30 4.96 0.30 N 55 1 C5 B DA 19 ? ? N7 B DA 19 ? ? C8 B DA 19 ? ? 100.85 103.90 -3.05 0.50 N 56 1 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.82 113.80 4.02 0.50 N 57 1 C8 B DA 19 ? ? N9 B DA 19 ? ? C4 B DA 19 ? ? 101.91 105.80 -3.89 0.40 N 58 1 N1 B DA 19 ? ? C6 B DA 19 ? ? N6 B DA 19 ? ? 112.81 118.60 -5.79 0.60 N 59 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 114.52 111.50 3.02 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.074 'SIDE CHAIN' 2 1 DA A 4 ? ? 0.102 'SIDE CHAIN' 3 1 DC B 15 ? ? 0.064 'SIDE CHAIN' 4 1 DC B 16 ? ? 0.080 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 7GU _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 7GU _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MMS _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MMS _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.contents ;0.5 mM DNA (5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3'), 0.5 mM DNA (5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3'), 100% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3')-1 ; 0.5 ? mM ? 1 ;DNA (5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3')-2 ; 0.5 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H COSY' 1 2 1 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2MMS _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber 12 1 'Bruker Biospin' collection TopSpin 3 2 'Bruker Biospin' processing TopSpin 3 3 Goddard 'chemical shift assignment' Sparky 3.115 4 Goddard 'peak picking' Sparky 3.115 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 7GU P P N N 1 7GU OP1 O N N 2 7GU OP2 O N N 3 7GU "O5'" O N N 4 7GU N9 N Y N 5 7GU C4 C Y N 6 7GU N3 N N N 7 7GU C2 C N N 8 7GU N2 N N N 9 7GU N1 N N N 10 7GU C6 C N N 11 7GU O6 O N N 12 7GU C5 C Y N 13 7GU C7 C Y N 14 7GU C8 C Y N 15 7GU "C2'" C N N 16 7GU "C5'" C N N 17 7GU "C4'" C N R 18 7GU "O4'" O N N 19 7GU "C1'" C N R 20 7GU "C3'" C N S 21 7GU "O3'" O N N 22 7GU OP3 O N N 23 7GU HOP2 H N N 24 7GU HN21 H N N 25 7GU HN22 H N N 26 7GU HN1 H N N 27 7GU H7 H N N 28 7GU H8 H N N 29 7GU "H2'" H N N 30 7GU "H2''" H N N 31 7GU "H5'" H N N 32 7GU "H5''" H N N 33 7GU "H4'" H N N 34 7GU "H1'" H N N 35 7GU "H3'" H N N 36 7GU "HO3'" H N N 37 7GU HOP3 H N N 38 DA OP3 O N N 39 DA P P N N 40 DA OP1 O N N 41 DA OP2 O N N 42 DA "O5'" O N N 43 DA "C5'" C N N 44 DA "C4'" C N R 45 DA "O4'" O N N 46 DA "C3'" C N S 47 DA "O3'" O N N 48 DA "C2'" C N N 49 DA "C1'" C N R 50 DA N9 N Y N 51 DA C8 C Y N 52 DA N7 N Y N 53 DA C5 C Y N 54 DA C6 C Y N 55 DA N6 N N N 56 DA N1 N Y N 57 DA C2 C Y N 58 DA N3 N Y N 59 DA C4 C Y N 60 DA HOP3 H N N 61 DA HOP2 H N N 62 DA "H5'" H N N 63 DA "H5''" H N N 64 DA "H4'" H N N 65 DA "H3'" H N N 66 DA "HO3'" H N N 67 DA "H2'" H N N 68 DA "H2''" H N N 69 DA "H1'" H N N 70 DA H8 H N N 71 DA H61 H N N 72 DA H62 H N N 73 DA H2 H N N 74 DC OP3 O N N 75 DC P P N N 76 DC OP1 O N N 77 DC OP2 O N N 78 DC "O5'" O N N 79 DC "C5'" C N N 80 DC "C4'" C N R 81 DC "O4'" O N N 82 DC "C3'" C N S 83 DC "O3'" O N N 84 DC "C2'" C N N 85 DC "C1'" C N R 86 DC N1 N N N 87 DC C2 C N N 88 DC O2 O N N 89 DC N3 N N N 90 DC C4 C N N 91 DC N4 N N N 92 DC C5 C N N 93 DC C6 C N N 94 DC HOP3 H N N 95 DC HOP2 H N N 96 DC "H5'" H N N 97 DC "H5''" H N N 98 DC "H4'" H N N 99 DC "H3'" H N N 100 DC "HO3'" H N N 101 DC "H2'" H N N 102 DC "H2''" H N N 103 DC "H1'" H N N 104 DC H41 H N N 105 DC H42 H N N 106 DC H5 H N N 107 DC H6 H N N 108 DG OP3 O N N 109 DG P P N N 110 DG OP1 O N N 111 DG OP2 O N N 112 DG "O5'" O N N 113 DG "C5'" C N N 114 DG "C4'" C N R 115 DG "O4'" O N N 116 DG "C3'" C N S 117 DG "O3'" O N N 118 DG "C2'" C N N 119 DG "C1'" C N R 120 DG N9 N Y N 121 DG C8 C Y N 122 DG N7 N Y N 123 DG C5 C Y N 124 DG C6 C N N 125 DG O6 O N N 126 DG N1 N N N 127 DG C2 C N N 128 DG N2 N N N 129 DG N3 N N N 130 DG C4 C Y N 131 DG HOP3 H N N 132 DG HOP2 H N N 133 DG "H5'" H N N 134 DG "H5''" H N N 135 DG "H4'" H N N 136 DG "H3'" H N N 137 DG "HO3'" H N N 138 DG "H2'" H N N 139 DG "H2''" H N N 140 DG "H1'" H N N 141 DG H8 H N N 142 DG H1 H N N 143 DG H21 H N N 144 DG H22 H N N 145 DT OP3 O N N 146 DT P P N N 147 DT OP1 O N N 148 DT OP2 O N N 149 DT "O5'" O N N 150 DT "C5'" C N N 151 DT "C4'" C N R 152 DT "O4'" O N N 153 DT "C3'" C N S 154 DT "O3'" O N N 155 DT "C2'" C N N 156 DT "C1'" C N R 157 DT N1 N N N 158 DT C2 C N N 159 DT O2 O N N 160 DT N3 N N N 161 DT C4 C N N 162 DT O4 O N N 163 DT C5 C N N 164 DT C7 C N N 165 DT C6 C N N 166 DT HOP3 H N N 167 DT HOP2 H N N 168 DT "H5'" H N N 169 DT "H5''" H N N 170 DT "H4'" H N N 171 DT "H3'" H N N 172 DT "HO3'" H N N 173 DT "H2'" H N N 174 DT "H2''" H N N 175 DT "H1'" H N N 176 DT H3 H N N 177 DT H71 H N N 178 DT H72 H N N 179 DT H73 H N N 180 DT H6 H N N 181 FAG C3A C N N 182 FAG C3 C N N 183 FAG C2A C N N 184 FAG C1 C N N 185 FAG O1 O N N 186 FAG P P N N 187 FAG O1P O N N 188 FAG O2P O N N 189 FAG "O5'" O N N 190 FAG "C5'" C N N 191 FAG "C4'" C N R 192 FAG "O4'" O N N 193 FAG "C1'" C N R 194 FAG N9 N N N 195 FAG C4 C N N 196 FAG N3 N N N 197 FAG C2 C N N 198 FAG N2 N N N 199 FAG N1 N N N 200 FAG C6 C N N 201 FAG O6 O N N 202 FAG C5 C N N 203 FAG N7 N N N 204 FAG C8 C N N 205 FAG O8 O N N 206 FAG "C2'" C N N 207 FAG "C3'" C N S 208 FAG "O3'" O N N 209 FAG C8A C N R 210 FAG C9 C N R 211 FAG O9 O N N 212 FAG C9A C N R 213 FAG C9B C Y N 214 FAG O7 O N N 215 FAG C6A C N S 216 FAG O6A O N N 217 FAG C5M C Y N 218 FAG C5B C Y N 219 FAG C4B C Y N 220 FAG O4 O N N 221 FAG CM C N N 222 FAG C4A C Y N 223 FAG CAA C Y N 224 FAG O10 O N N 225 FAG C11 C N N 226 FAG O11 O N N 227 FAG CBA C N N 228 FAG H31 H N N 229 FAG H32 H N N 230 FAG H2A1 H N N 231 FAG H2A2 H N N 232 FAG HOP2 H N N 233 FAG "H5'1" H N N 234 FAG "H5'2" H N N 235 FAG "H4'" H N N 236 FAG "H1'" H N N 237 FAG HN9 H N N 238 FAG HN21 H N N 239 FAG HN22 H N N 240 FAG H1 H N N 241 FAG H8 H N N 242 FAG "H2'1" H N N 243 FAG "H2'2" H N N 244 FAG "H3'" H N N 245 FAG "HO3'" H N N 246 FAG H8A H N N 247 FAG H9 H N N 248 FAG HO9 H N N 249 FAG H9A H N N 250 FAG H6A H N N 251 FAG H5B H N N 252 FAG HM1 H N N 253 FAG HM2 H N N 254 FAG HM3 H N N 255 FAG O3P O N N 256 FAG HOP3 H N N 257 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7GU P OP1 doub N N 1 7GU P OP2 sing N N 2 7GU P "O5'" sing N N 3 7GU P OP3 sing N N 4 7GU OP2 HOP2 sing N N 5 7GU "O5'" "C5'" sing N N 6 7GU N9 C4 sing Y N 7 7GU N9 C8 sing Y N 8 7GU N9 "C1'" sing N N 9 7GU C4 N3 sing N N 10 7GU C4 C5 doub Y N 11 7GU N3 C2 doub N N 12 7GU C2 N2 sing N N 13 7GU C2 N1 sing N N 14 7GU N2 HN21 sing N N 15 7GU N2 HN22 sing N N 16 7GU N1 C6 sing N N 17 7GU N1 HN1 sing N N 18 7GU C6 O6 doub N N 19 7GU C6 C5 sing N N 20 7GU C5 C7 sing Y N 21 7GU C7 C8 doub Y N 22 7GU C7 H7 sing N N 23 7GU C8 H8 sing N N 24 7GU "C2'" "C1'" sing N N 25 7GU "C2'" "C3'" sing N N 26 7GU "C2'" "H2'" sing N N 27 7GU "C2'" "H2''" sing N N 28 7GU "C5'" "C4'" sing N N 29 7GU "C5'" "H5'" sing N N 30 7GU "C5'" "H5''" sing N N 31 7GU "C4'" "O4'" sing N N 32 7GU "C4'" "C3'" sing N N 33 7GU "C4'" "H4'" sing N N 34 7GU "O4'" "C1'" sing N N 35 7GU "C1'" "H1'" sing N N 36 7GU "C3'" "O3'" sing N N 37 7GU "C3'" "H3'" sing N N 38 7GU "O3'" "HO3'" sing N N 39 7GU OP3 HOP3 sing N N 40 DA OP3 P sing N N 41 DA OP3 HOP3 sing N N 42 DA P OP1 doub N N 43 DA P OP2 sing N N 44 DA P "O5'" sing N N 45 DA OP2 HOP2 sing N N 46 DA "O5'" "C5'" sing N N 47 DA "C5'" "C4'" sing N N 48 DA "C5'" "H5'" sing N N 49 DA "C5'" "H5''" sing N N 50 DA "C4'" "O4'" sing N N 51 DA "C4'" "C3'" sing N N 52 DA "C4'" "H4'" sing N N 53 DA "O4'" "C1'" sing N N 54 DA "C3'" "O3'" sing N N 55 DA "C3'" "C2'" sing N N 56 DA "C3'" "H3'" sing N N 57 DA "O3'" "HO3'" sing N N 58 DA "C2'" "C1'" sing N N 59 DA "C2'" "H2'" sing N N 60 DA "C2'" "H2''" sing N N 61 DA "C1'" N9 sing N N 62 DA "C1'" "H1'" sing N N 63 DA N9 C8 sing Y N 64 DA N9 C4 sing Y N 65 DA C8 N7 doub Y N 66 DA C8 H8 sing N N 67 DA N7 C5 sing Y N 68 DA C5 C6 sing Y N 69 DA C5 C4 doub Y N 70 DA C6 N6 sing N N 71 DA C6 N1 doub Y N 72 DA N6 H61 sing N N 73 DA N6 H62 sing N N 74 DA N1 C2 sing Y N 75 DA C2 N3 doub Y N 76 DA C2 H2 sing N N 77 DA N3 C4 sing Y N 78 DC OP3 P sing N N 79 DC OP3 HOP3 sing N N 80 DC P OP1 doub N N 81 DC P OP2 sing N N 82 DC P "O5'" sing N N 83 DC OP2 HOP2 sing N N 84 DC "O5'" "C5'" sing N N 85 DC "C5'" "C4'" sing N N 86 DC "C5'" "H5'" sing N N 87 DC "C5'" "H5''" sing N N 88 DC "C4'" "O4'" sing N N 89 DC "C4'" "C3'" sing N N 90 DC "C4'" "H4'" sing N N 91 DC "O4'" "C1'" sing N N 92 DC "C3'" "O3'" sing N N 93 DC "C3'" "C2'" sing N N 94 DC "C3'" "H3'" sing N N 95 DC "O3'" "HO3'" sing N N 96 DC "C2'" "C1'" sing N N 97 DC "C2'" "H2'" sing N N 98 DC "C2'" "H2''" sing N N 99 DC "C1'" N1 sing N N 100 DC "C1'" "H1'" sing N N 101 DC N1 C2 sing N N 102 DC N1 C6 sing N N 103 DC C2 O2 doub N N 104 DC C2 N3 sing N N 105 DC N3 C4 doub N N 106 DC C4 N4 sing N N 107 DC C4 C5 sing N N 108 DC N4 H41 sing N N 109 DC N4 H42 sing N N 110 DC C5 C6 doub N N 111 DC C5 H5 sing N N 112 DC C6 H6 sing N N 113 DG OP3 P sing N N 114 DG OP3 HOP3 sing N N 115 DG P OP1 doub N N 116 DG P OP2 sing N N 117 DG P "O5'" sing N N 118 DG OP2 HOP2 sing N N 119 DG "O5'" "C5'" sing N N 120 DG "C5'" "C4'" sing N N 121 DG "C5'" "H5'" sing N N 122 DG "C5'" "H5''" sing N N 123 DG "C4'" "O4'" sing N N 124 DG "C4'" "C3'" sing N N 125 DG "C4'" "H4'" sing N N 126 DG "O4'" "C1'" sing N N 127 DG "C3'" "O3'" sing N N 128 DG "C3'" "C2'" sing N N 129 DG "C3'" "H3'" sing N N 130 DG "O3'" "HO3'" sing N N 131 DG "C2'" "C1'" sing N N 132 DG "C2'" "H2'" sing N N 133 DG "C2'" "H2''" sing N N 134 DG "C1'" N9 sing N N 135 DG "C1'" "H1'" sing N N 136 DG N9 C8 sing Y N 137 DG N9 C4 sing Y N 138 DG C8 N7 doub Y N 139 DG C8 H8 sing N N 140 DG N7 C5 sing Y N 141 DG C5 C6 sing N N 142 DG C5 C4 doub Y N 143 DG C6 O6 doub N N 144 DG C6 N1 sing N N 145 DG N1 C2 sing N N 146 DG N1 H1 sing N N 147 DG C2 N2 sing N N 148 DG C2 N3 doub N N 149 DG N2 H21 sing N N 150 DG N2 H22 sing N N 151 DG N3 C4 sing N N 152 DT OP3 P sing N N 153 DT OP3 HOP3 sing N N 154 DT P OP1 doub N N 155 DT P OP2 sing N N 156 DT P "O5'" sing N N 157 DT OP2 HOP2 sing N N 158 DT "O5'" "C5'" sing N N 159 DT "C5'" "C4'" sing N N 160 DT "C5'" "H5'" sing N N 161 DT "C5'" "H5''" sing N N 162 DT "C4'" "O4'" sing N N 163 DT "C4'" "C3'" sing N N 164 DT "C4'" "H4'" sing N N 165 DT "O4'" "C1'" sing N N 166 DT "C3'" "O3'" sing N N 167 DT "C3'" "C2'" sing N N 168 DT "C3'" "H3'" sing N N 169 DT "O3'" "HO3'" sing N N 170 DT "C2'" "C1'" sing N N 171 DT "C2'" "H2'" sing N N 172 DT "C2'" "H2''" sing N N 173 DT "C1'" N1 sing N N 174 DT "C1'" "H1'" sing N N 175 DT N1 C2 sing N N 176 DT N1 C6 sing N N 177 DT C2 O2 doub N N 178 DT C2 N3 sing N N 179 DT N3 C4 sing N N 180 DT N3 H3 sing N N 181 DT C4 O4 doub N N 182 DT C4 C5 sing N N 183 DT C5 C7 sing N N 184 DT C5 C6 doub N N 185 DT C7 H71 sing N N 186 DT C7 H72 sing N N 187 DT C7 H73 sing N N 188 DT C6 H6 sing N N 189 FAG C3A C3 sing N N 190 FAG C3A C4A sing N N 191 FAG C3A CBA doub N N 192 FAG C3 C2A sing N N 193 FAG C3 H31 sing N N 194 FAG C3 H32 sing N N 195 FAG C2A C1 sing N N 196 FAG C2A H2A1 sing N N 197 FAG C2A H2A2 sing N N 198 FAG C1 O1 doub N N 199 FAG C1 CBA sing N N 200 FAG P O1P doub N N 201 FAG P O2P sing N N 202 FAG P "O5'" sing N N 203 FAG O2P HOP2 sing N N 204 FAG "O5'" "C5'" sing N N 205 FAG "C5'" "C4'" sing N N 206 FAG "C5'" "H5'1" sing N N 207 FAG "C5'" "H5'2" sing N N 208 FAG "C4'" "O4'" sing N N 209 FAG "C4'" "C3'" sing N N 210 FAG "C4'" "H4'" sing N N 211 FAG "O4'" "C1'" sing N N 212 FAG "C1'" N9 sing N N 213 FAG "C1'" "C2'" sing N N 214 FAG "C1'" "H1'" sing N N 215 FAG N9 C4 sing N N 216 FAG N9 HN9 sing N N 217 FAG C4 N3 sing N N 218 FAG C4 C5 doub N N 219 FAG N3 C2 doub N N 220 FAG C2 N2 sing N N 221 FAG C2 N1 sing N N 222 FAG N2 HN21 sing N N 223 FAG N2 HN22 sing N N 224 FAG N1 C6 sing N N 225 FAG N1 H1 sing N N 226 FAG C6 O6 doub N N 227 FAG C6 C5 sing N N 228 FAG C5 N7 sing N N 229 FAG N7 C8 sing N N 230 FAG N7 C8A sing N N 231 FAG C8 O8 doub N N 232 FAG C8 H8 sing N N 233 FAG "C2'" "C3'" sing N N 234 FAG "C2'" "H2'1" sing N N 235 FAG "C2'" "H2'2" sing N N 236 FAG "C3'" "O3'" sing N N 237 FAG "C3'" "H3'" sing N N 238 FAG "O3'" "HO3'" sing N N 239 FAG C8A C9 sing N N 240 FAG C8A O7 sing N N 241 FAG C8A H8A sing N N 242 FAG C9 O9 sing N N 243 FAG C9 C9A sing N N 244 FAG C9 H9 sing N N 245 FAG O9 HO9 sing N N 246 FAG C9A C9B sing N N 247 FAG C9A C6A sing N N 248 FAG C9A H9A sing N N 249 FAG C9B C5M doub Y N 250 FAG C9B CAA sing Y N 251 FAG O7 C6A sing N N 252 FAG C6A O6A sing N N 253 FAG C6A H6A sing N N 254 FAG O6A C5M sing N N 255 FAG C5M C5B sing Y N 256 FAG C5B C4B doub Y N 257 FAG C5B H5B sing N N 258 FAG C4B O4 sing N N 259 FAG C4B C4A sing Y N 260 FAG O4 CM sing N N 261 FAG CM HM1 sing N N 262 FAG CM HM2 sing N N 263 FAG CM HM3 sing N N 264 FAG C4A CAA doub Y N 265 FAG CAA O10 sing N N 266 FAG O10 C11 sing N N 267 FAG C11 O11 doub N N 268 FAG C11 CBA sing N N 269 FAG P O3P sing N N 270 FAG O3P HOP3 sing N N 271 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MMS 'double helix' 2MMS 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.322 -0.084 0.094 1.384 -14.774 -1.020 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DT 2 1_555 B DA 9 1_555 -0.108 0.050 -0.238 13.358 -0.032 2.074 2 A_DT2:DA19_B A 2 ? B 19 ? 20 1 1 A DA 3 1_555 B DT 8 1_555 0.216 0.249 0.798 48.441 1.186 3.129 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DA 4 1_555 B DT 7 1_555 0.355 0.293 0.278 49.573 0.825 4.898 4 A_DA4:DT17_B A 4 ? B 17 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.217 -0.340 3.076 2.315 5.931 30.104 -1.720 0.831 2.933 11.261 -4.396 30.755 1 AA_DC1DT2:DA19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DT 2 1_555 B DA 9 1_555 A DA 3 1_555 B DT 8 1_555 0.596 0.567 2.784 -8.155 -7.083 42.209 1.328 -1.452 2.510 -9.648 11.107 43.508 2 AA_DT2DA3:DT18DA19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DA 4 1_555 B DT 7 1_555 -0.136 -0.290 3.856 3.297 10.737 31.049 -2.638 0.893 3.532 19.284 -5.921 32.971 3 AA_DA3DA4:DT17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 900 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2MMS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_