HEADER RNA BINDING PROTEIN 22-MAR-14 2MMY TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF HUMAN TAF15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TATA-BINDING PROTEIN-ASSOCIATED FACTOR 2N; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN, UNP RESIDUES 231-323; COMPND 5 SYNONYM: 68 KDA TATA-BINDING PROTEIN-ASSOCIATED FACTOR, TAF(II)68, COMPND 6 TAFII68, RNA-BINDING PROTEIN 56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAF15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET 28A KEYWDS TAF15, RRM, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.KASHYAP,A.K.GANGULY,N.S.BHAVESH REVDAT 3 14-JUN-23 2MMY 1 REMARK SEQADV REVDAT 2 09-DEC-15 2MMY 1 JRNL REVDAT 1 25-MAR-15 2MMY 0 JRNL AUTH M.KASHYAP,A.K.GANGULY,N.S.BHAVESH JRNL TITL STRUCTURAL DELINEATION OF STEM-LOOP RNA BINDING BY HUMAN JRNL TITL 2 TAF15 PROTEIN JRNL REF SCI REP V. 5 17298 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26612539 JRNL DOI 10.1038/SREP17298 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000103807. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 TAF15-RRM-1, 50 UM DSS-2, 20 MM REMARK 210 SODIUM PHOSPHATE-3, 50 MM SODIUM REMARK 210 CHLORIDE-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 228 -171.70 68.40 REMARK 500 1 SER A 231 177.56 69.60 REMARK 500 1 LEU A 241 74.56 -103.48 REMARK 500 1 THR A 247 -167.46 -62.26 REMARK 500 1 ASP A 248 -12.83 -44.29 REMARK 500 1 LYS A 306 -154.04 -133.72 REMARK 500 1 ALA A 318 -158.30 63.08 REMARK 500 1 ARG A 321 86.89 65.29 REMARK 500 2 HIS A 229 81.68 60.32 REMARK 500 2 LEU A 241 75.48 -114.96 REMARK 500 2 THR A 247 -166.04 -64.71 REMARK 500 2 ASP A 248 -14.16 -42.64 REMARK 500 2 ALA A 318 -165.92 62.75 REMARK 500 2 ARG A 321 84.34 43.91 REMARK 500 3 SER A 228 -60.30 73.71 REMARK 500 3 LEU A 241 78.65 -105.00 REMARK 500 3 THR A 247 -167.76 -63.18 REMARK 500 3 ASP A 248 -13.12 -44.14 REMARK 500 3 LYS A 306 -159.21 -132.19 REMARK 500 3 THR A 319 121.93 65.83 REMARK 500 3 ARG A 321 88.86 -166.56 REMARK 500 4 MET A 230 30.76 -143.86 REMARK 500 4 LEU A 241 76.92 -112.02 REMARK 500 4 THR A 247 -165.79 -62.58 REMARK 500 4 ASP A 248 -14.08 -42.89 REMARK 500 4 LYS A 306 -153.20 -140.56 REMARK 500 4 ALA A 318 -165.22 64.56 REMARK 500 4 PRO A 322 90.37 -66.14 REMARK 500 5 SER A 228 19.90 55.41 REMARK 500 5 HIS A 229 174.21 63.65 REMARK 500 5 MET A 230 83.02 -152.43 REMARK 500 5 LEU A 241 73.06 -112.72 REMARK 500 5 GLU A 243 87.19 40.84 REMARK 500 5 THR A 247 -169.13 -64.69 REMARK 500 5 ASP A 248 -12.48 -44.11 REMARK 500 5 LYS A 306 -156.54 -131.25 REMARK 500 5 ALA A 318 -170.08 67.32 REMARK 500 5 ARG A 321 165.28 74.32 REMARK 500 6 LEU A 241 75.08 -115.48 REMARK 500 6 THR A 247 -167.35 -62.95 REMARK 500 6 ASP A 248 -12.10 -44.44 REMARK 500 6 LYS A 306 -159.37 -122.05 REMARK 500 6 ALA A 318 -162.35 66.93 REMARK 500 7 SER A 231 144.74 75.44 REMARK 500 7 LEU A 241 64.15 -106.07 REMARK 500 7 THR A 247 -167.75 -62.21 REMARK 500 7 ASP A 248 -12.91 -43.38 REMARK 500 7 LYS A 306 -154.47 -123.48 REMARK 500 7 ALA A 318 -164.33 63.10 REMARK 500 7 ARG A 321 167.26 71.40 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19320 RELATED DB: BMRB DBREF 2MMY A 231 323 UNP Q92804 RBP56_HUMAN 231 323 SEQADV 2MMY GLY A 227 UNP Q92804 EXPRESSION TAG SEQADV 2MMY SER A 228 UNP Q92804 EXPRESSION TAG SEQADV 2MMY HIS A 229 UNP Q92804 EXPRESSION TAG SEQADV 2MMY MET A 230 UNP Q92804 EXPRESSION TAG SEQRES 1 A 97 GLY SER HIS MET SER ASP ASN ASN THR ILE PHE VAL GLN SEQRES 2 A 97 GLY LEU GLY GLU GLY VAL SER THR ASP GLN VAL GLY GLU SEQRES 3 A 97 PHE PHE LYS GLN ILE GLY ILE ILE LYS THR ASN LYS LYS SEQRES 4 A 97 THR GLY LYS PRO MET ILE ASN LEU TYR THR ASP LYS ASP SEQRES 5 A 97 THR GLY LYS PRO LYS GLY GLU ALA THR VAL SER PHE ASP SEQRES 6 A 97 ASP PRO PRO SER ALA LYS ALA ALA ILE ASP TRP PHE ASP SEQRES 7 A 97 GLY LYS GLU PHE HIS GLY ASN ILE ILE LYS VAL SER PHE SEQRES 8 A 97 ALA THR ARG ARG PRO GLU HELIX 1 1 GLN A 249 GLN A 256 1 8 HELIX 2 2 ASP A 292 TRP A 302 1 11 SHEET 1 A 4 ASN A 272 TYR A 274 0 SHEET 2 A 4 GLU A 285 VAL A 288 -1 O GLU A 285 N TYR A 274 SHEET 3 A 4 ILE A 236 GLN A 239 -1 N VAL A 238 O ALA A 286 SHEET 4 A 4 LYS A 314 SER A 316 -1 O SER A 316 N PHE A 237 SHEET 1 B 2 GLU A 307 PHE A 308 0 SHEET 2 B 2 ASN A 311 ILE A 312 -1 O ASN A 311 N PHE A 308 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1