data_2MNE # _entry.id 2MNE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MNE pdb_00002mne 10.2210/pdb2mne/pdb RCSB RCSB103823 ? ? BMRB 19889 ? 10.13018/BMR19889 WWPDB D_1000103823 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2014-09-17 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' pdbx_nmr_spectrometer 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MNE _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19889 BMRB unspecified . 2MND PDB unspecified . 2MNF PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alniss, H.Y.' 1 'Salvia, M.-V.' 2 'Sadikov, M.' 3 'Golovchenko, I.' 4 'Anthony, N.G.' 5 'Khalaf, A.I.' 6 'Mackay, S.P.' 7 'Suckling, C.J.' 8 'Parkinson, J.A.' 9 # _citation.id primary _citation.title 'Recognition of the DNA minor groove by thiazotropsin analogues.' _citation.journal_abbrev Chembiochem _citation.journal_volume 15 _citation.page_first 1978 _citation.page_last 1990 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25045155 _citation.pdbx_database_id_DOI 10.1002/cbic.201402202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Alniss, H.Y.' 1 ? primary 'Salvia, M.V.' 2 ? primary 'Sadikov, M.' 3 ? primary 'Golovchenko, I.' 4 ? primary 'Anthony, N.G.' 5 ? primary 'Khalaf, A.I.' 6 ? primary 'MacKay, S.P.' 7 ? primary 'Suckling, C.J.' 8 ? primary 'Parkinson, J.A.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'" 3045.005 2 ? ? ? ? 2 non-polymer syn AIK-18/51 620.746 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGACTAGTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name AIK-18/51 _pdbx_entity_nonpoly.comp_id 3B5 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3B5 non-polymer . AIK-18/51 ;N,N-dimethyl-3-[({2-[({1-methyl-4-[({1-methyl-4-[(pyridin-3-ylcarbonyl)amino]-1H-pyrrol-2-yl}carbonyl)amino]-1H-pyrrol- 2-yl}carbonyl)amino]-5-(propan-2-yl)-1,3-thiazol-4-yl}carbonyl)amino]propan-1-aminium ; 'C30 H38 N9 O4 S 1' 620.746 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 11 11 DC DC B . n B 1 2 DG 2 12 12 DG DG B . n B 1 3 DA 3 13 13 DA DA B . n B 1 4 DC 4 14 14 DC DC B . n B 1 5 DT 5 15 15 DT DT B . n B 1 6 DA 6 16 16 DA DA B . n B 1 7 DG 7 17 17 DG DG B . n B 1 8 DT 8 18 18 DT DT B . n B 1 9 DC 9 19 19 DC DC B . n B 1 10 DG 10 20 20 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3B5 1 101 21 3B5 AIK A . D 2 3B5 1 101 22 3B5 AIK B . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MNE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MNE _struct.title 'Recognition complex of DNA d(CGACTAGTCG)2 with thiazotropsin analogue AIK-18/51' _struct.pdbx_model_details 'minimized average structure, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2MNE _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'THIAZOTROPSINS, DNA RECOGNITION, ISOTHERMAL TITRATION CALORIMETRY NMR, SELF-ASSEMBLY, MINOR GROOVE BINDER, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MNE _struct_ref.pdbx_db_accession 2MNE _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MNE A 1 ? 10 ? 2MNE 1 ? 10 ? 1 10 2 1 2MNE B 1 ? 10 ? 2MNE 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DA 6 N6 ? ? A DC 4 B DA 16 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3B5 101 ? 8 'BINDING SITE FOR RESIDUE 3B5 A 101' AC2 Software B 3B5 101 ? 11 'BINDING SITE FOR RESIDUE 3B5 B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 4 ? DC A 4 . ? 1_555 ? 2 AC1 8 DT A 5 ? DT A 5 . ? 1_555 ? 3 AC1 8 DA A 6 ? DA A 6 . ? 1_555 ? 4 AC1 8 DG A 7 ? DG A 7 . ? 1_555 ? 5 AC1 8 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 8 DC A 9 ? DC A 9 . ? 1_555 ? 7 AC1 8 DC B 4 ? DC B 14 . ? 1_555 ? 8 AC1 8 3B5 D . ? 3B5 B 101 . ? 1_555 ? 9 AC2 11 DG A 2 ? DG A 2 . ? 1_555 ? 10 AC2 11 DA A 3 ? DA A 3 . ? 1_555 ? 11 AC2 11 DC A 4 ? DC A 4 . ? 1_555 ? 12 AC2 11 DG A 7 ? DG A 7 . ? 1_555 ? 13 AC2 11 3B5 C . ? 3B5 A 101 . ? 1_555 ? 14 AC2 11 DC B 4 ? DC B 14 . ? 1_555 ? 15 AC2 11 DT B 5 ? DT B 15 . ? 1_555 ? 16 AC2 11 DA B 6 ? DA B 16 . ? 1_555 ? 17 AC2 11 DG B 7 ? DG B 17 . ? 1_555 ? 18 AC2 11 DT B 8 ? DT B 18 . ? 1_555 ? 19 AC2 11 DC B 9 ? DC B 19 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? 1.442 1.353 0.089 0.008 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.271 1.335 -0.064 0.007 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.482 1.425 0.057 0.008 N 4 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.440 1.350 0.090 0.007 N 5 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.331 1.379 -0.048 0.007 N 6 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.435 1.388 0.047 0.006 N 7 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.261 1.305 -0.044 0.006 N 8 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.303 1.374 -0.071 0.007 N 9 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.310 1.375 -0.065 0.008 N 10 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.338 1.388 -0.050 0.006 N 11 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.267 1.311 -0.044 0.007 N 12 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.309 1.373 -0.064 0.008 N 13 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.444 1.353 0.091 0.008 N 14 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.272 1.335 -0.063 0.007 N 15 1 C4 A DC 4 ? ? C5 A DC 4 ? ? 1.477 1.425 0.052 0.008 N 16 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.338 1.388 -0.050 0.006 N 17 1 N7 A DA 6 ? ? C8 A DA 6 ? ? 1.267 1.311 -0.044 0.007 N 18 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.309 1.373 -0.064 0.008 N 19 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.442 1.350 0.092 0.007 N 20 1 C4 A DG 7 ? ? C5 A DG 7 ? ? 1.331 1.379 -0.048 0.007 N 21 1 C5 A DG 7 ? ? N7 A DG 7 ? ? 1.435 1.388 0.047 0.006 N 22 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.260 1.305 -0.045 0.006 N 23 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.304 1.374 -0.070 0.007 N 24 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.314 1.375 -0.061 0.008 N 25 1 C2 A DC 9 ? ? N3 A DC 9 ? ? 1.444 1.353 0.091 0.008 N 26 1 N3 A DC 9 ? ? C4 A DC 9 ? ? 1.271 1.335 -0.064 0.007 N 27 1 C4 A DC 9 ? ? C5 A DC 9 ? ? 1.479 1.425 0.054 0.008 N 28 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.439 1.350 0.089 0.007 N 29 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.329 1.379 -0.050 0.007 N 30 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.436 1.388 0.048 0.006 N 31 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.262 1.305 -0.043 0.006 N 32 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.303 1.374 -0.071 0.007 N 33 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.310 1.375 -0.065 0.008 N 34 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.442 1.353 0.089 0.008 N 35 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.271 1.335 -0.064 0.007 N 36 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.481 1.425 0.056 0.008 N 37 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.441 1.350 0.091 0.007 N 38 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.330 1.379 -0.049 0.007 N 39 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.436 1.388 0.048 0.006 N 40 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.260 1.305 -0.045 0.006 N 41 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.303 1.374 -0.071 0.007 N 42 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.309 1.375 -0.066 0.008 N 43 1 C5 B DA 13 ? ? N7 B DA 13 ? ? 1.338 1.388 -0.050 0.006 N 44 1 N7 B DA 13 ? ? C8 B DA 13 ? ? 1.268 1.311 -0.043 0.007 N 45 1 C8 B DA 13 ? ? N9 B DA 13 ? ? 1.309 1.373 -0.064 0.008 N 46 1 C2 B DC 14 ? ? N3 B DC 14 ? ? 1.442 1.353 0.089 0.008 N 47 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.271 1.335 -0.064 0.007 N 48 1 C4 B DC 14 ? ? C5 B DC 14 ? ? 1.481 1.425 0.056 0.008 N 49 1 C5 B DA 16 ? ? N7 B DA 16 ? ? 1.339 1.388 -0.049 0.006 N 50 1 N7 B DA 16 ? ? C8 B DA 16 ? ? 1.267 1.311 -0.044 0.007 N 51 1 C8 B DA 16 ? ? N9 B DA 16 ? ? 1.307 1.373 -0.066 0.008 N 52 1 N3 B DG 17 ? ? C4 B DG 17 ? ? 1.441 1.350 0.091 0.007 N 53 1 C4 B DG 17 ? ? C5 B DG 17 ? ? 1.330 1.379 -0.049 0.007 N 54 1 C5 B DG 17 ? ? N7 B DG 17 ? ? 1.434 1.388 0.046 0.006 N 55 1 N7 B DG 17 ? ? C8 B DG 17 ? ? 1.259 1.305 -0.046 0.006 N 56 1 C8 B DG 17 ? ? N9 B DG 17 ? ? 1.306 1.374 -0.068 0.007 N 57 1 N9 B DG 17 ? ? C4 B DG 17 ? ? 1.311 1.375 -0.064 0.008 N 58 1 C2 B DC 19 ? ? N3 B DC 19 ? ? 1.444 1.353 0.091 0.008 N 59 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.272 1.335 -0.063 0.007 N 60 1 C4 B DC 19 ? ? C5 B DC 19 ? ? 1.478 1.425 0.053 0.008 N 61 1 N3 B DG 20 ? ? C4 B DG 20 ? ? 1.440 1.350 0.090 0.007 N 62 1 C4 B DG 20 ? ? C5 B DG 20 ? ? 1.330 1.379 -0.049 0.007 N 63 1 C5 B DG 20 ? ? N7 B DG 20 ? ? 1.435 1.388 0.047 0.006 N 64 1 N7 B DG 20 ? ? C8 B DG 20 ? ? 1.260 1.305 -0.045 0.006 N 65 1 C8 B DG 20 ? ? N9 B DG 20 ? ? 1.303 1.374 -0.071 0.007 N 66 1 N9 B DG 20 ? ? C4 B DG 20 ? ? 1.311 1.375 -0.064 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 116.13 108.30 7.83 0.30 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.52 121.90 -5.38 0.40 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 121.24 117.40 3.84 0.50 N 4 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.69 118.90 3.79 0.60 N 5 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.82 121.90 -5.08 0.70 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.28 118.00 4.28 0.70 N 7 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 109.43 119.60 -10.17 1.50 N 8 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.78 105.90 -5.12 0.80 N 9 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 120.86 111.90 8.96 0.50 N 10 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 119.03 128.60 -9.57 0.50 N 11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.53 111.50 4.03 0.50 N 12 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 101.42 110.80 -9.38 0.40 N 13 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 109.07 104.30 4.77 0.50 N 14 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 111.39 105.40 5.99 0.40 N 15 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 138.11 130.40 7.71 0.60 N 16 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.77 119.90 4.87 0.60 N 17 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 119.70 128.60 -8.90 0.60 N 18 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 109.67 119.60 -9.93 1.50 N 19 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 99.92 105.90 -5.98 0.80 N 20 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.23 108.30 2.93 0.30 N 21 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 122.58 129.30 -6.72 0.50 N 22 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 118.02 110.60 7.42 0.50 N 23 1 N3 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 119.38 126.80 -7.42 0.70 N 24 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 122.76 117.00 5.76 0.50 N 25 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 105.25 110.70 -5.45 0.50 N 26 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 109.90 103.90 6.00 0.50 N 27 1 N3 A DA 3 ? ? C4 A DA 3 ? ? N9 A DA 3 ? ? 133.93 127.40 6.53 0.80 N 28 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.49 118.60 3.89 0.60 N 29 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DC 4 ? ? 129.56 119.70 9.86 1.20 Y 30 1 OP1 A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 110.16 119.60 -9.44 1.50 N 31 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 116.57 121.90 -5.33 0.40 N 32 1 C4 A DC 4 ? ? C5 A DC 4 ? ? C6 A DC 4 ? ? 121.10 117.40 3.70 0.50 N 33 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.97 118.90 4.07 0.60 N 34 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.75 121.90 -5.15 0.70 N 35 1 N3 A DC 4 ? ? C4 A DC 4 ? ? N4 A DC 4 ? ? 122.91 118.00 4.91 0.70 N 36 1 OP1 A DT 5 ? ? P A DT 5 ? ? OP2 A DT 5 ? ? 109.01 119.60 -10.59 1.50 N 37 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 100.16 105.90 -5.74 0.80 N 38 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 114.37 108.30 6.07 0.30 N 39 1 N1 A DT 5 ? ? C2 A DT 5 ? ? N3 A DT 5 ? ? 119.04 114.60 4.44 0.60 N 40 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 121.86 127.20 -5.34 0.60 N 41 1 C5 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 119.74 124.90 -5.16 0.70 N 42 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 109.28 119.60 -10.32 1.50 N 43 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 122.69 129.30 -6.61 0.50 N 44 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 118.20 110.60 7.60 0.50 N 45 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 119.17 126.80 -7.63 0.70 N 46 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 122.86 117.00 5.86 0.50 N 47 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 105.28 110.70 -5.42 0.50 N 48 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 109.81 103.90 5.91 0.50 N 49 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 134.09 127.40 6.69 0.80 N 50 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 122.65 118.60 4.05 0.60 N 51 1 OP1 A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 109.72 119.60 -9.88 1.50 N 52 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 120.77 111.90 8.87 0.50 N 53 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 118.66 128.60 -9.94 0.50 N 54 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 115.10 111.50 3.60 0.50 N 55 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 101.41 110.80 -9.39 0.40 N 56 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 109.14 104.30 4.84 0.50 N 57 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 111.46 105.40 6.06 0.40 N 58 1 N3 A DG 7 ? ? C4 A DG 7 ? ? N9 A DG 7 ? ? 129.88 126.00 3.88 0.60 N 59 1 C6 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 137.57 130.40 7.17 0.60 N 60 1 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 124.53 119.90 4.63 0.60 N 61 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 120.37 128.60 -8.23 0.60 N 62 1 "C3'" A DG 7 ? ? "O3'" A DG 7 ? ? P A DT 8 ? ? 127.28 119.70 7.58 1.20 Y 63 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 110.28 119.60 -9.32 1.50 N 64 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 101.01 104.50 -3.49 0.40 N 65 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.12 108.30 2.82 0.30 N 66 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.82 114.60 4.22 0.60 N 67 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.37 127.20 -4.83 0.60 N 68 1 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 119.68 124.90 -5.22 0.70 N 69 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 109.85 119.60 -9.75 1.50 N 70 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 116.71 121.90 -5.19 0.40 N 71 1 C4 A DC 9 ? ? C5 A DC 9 ? ? C6 A DC 9 ? ? 120.86 117.40 3.46 0.50 N 72 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.18 118.90 4.28 0.60 N 73 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 116.49 121.90 -5.41 0.70 N 74 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 122.63 118.00 4.63 0.70 N 75 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 109.23 119.60 -10.37 1.50 N 76 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 100.26 105.90 -5.64 0.80 N 77 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.55 108.30 3.25 0.30 N 78 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 120.92 111.90 9.02 0.50 N 79 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 119.27 128.60 -9.33 0.50 N 80 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.29 111.50 3.79 0.50 N 81 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 101.22 110.80 -9.58 0.40 N 82 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 109.21 104.30 4.91 0.50 N 83 1 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 110.00 113.10 -3.10 0.50 N 84 1 N9 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 111.65 105.40 6.25 0.40 N 85 1 C6 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 138.44 130.40 8.04 0.60 N 86 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.48 119.90 4.58 0.60 N 87 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 120.23 128.60 -8.37 0.60 N 88 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 115.12 108.30 6.82 0.30 N 89 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 116.43 121.90 -5.47 0.40 N 90 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 121.25 117.40 3.85 0.50 N 91 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.70 118.90 3.80 0.60 N 92 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 116.88 121.90 -5.02 0.70 N 93 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 122.39 118.00 4.39 0.70 N 94 1 OP1 B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 109.32 119.60 -10.28 1.50 N 95 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 120.84 111.90 8.94 0.50 N 96 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 118.98 128.60 -9.62 0.50 N 97 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 115.52 111.50 4.02 0.50 N 98 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 101.30 110.80 -9.50 0.40 N 99 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 109.14 104.30 4.84 0.50 N 100 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 110.05 113.10 -3.05 0.50 N 101 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 111.52 105.40 6.12 0.40 N 102 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 138.17 130.40 7.77 0.60 N 103 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.57 119.90 4.67 0.60 N 104 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 119.91 128.60 -8.69 0.60 N 105 1 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DA 13 ? ? 132.17 119.70 12.47 1.20 Y 106 1 OP1 B DA 13 ? ? P B DA 13 ? ? OP2 B DA 13 ? ? 108.45 119.60 -11.15 1.50 N 107 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? "C2'" B DA 13 ? ? 100.72 105.90 -5.18 0.80 N 108 1 C6 B DA 13 ? ? N1 B DA 13 ? ? C2 B DA 13 ? ? 122.31 118.60 3.71 0.60 N 109 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 122.33 129.30 -6.97 0.50 N 110 1 C2 B DA 13 ? ? N3 B DA 13 ? ? C4 B DA 13 ? ? 117.83 110.60 7.23 0.50 N 111 1 N3 B DA 13 ? ? C4 B DA 13 ? ? C5 B DA 13 ? ? 120.03 126.80 -6.77 0.70 N 112 1 C4 B DA 13 ? ? C5 B DA 13 ? ? C6 B DA 13 ? ? 122.39 117.00 5.39 0.50 N 113 1 C4 B DA 13 ? ? C5 B DA 13 ? ? N7 B DA 13 ? ? 105.35 110.70 -5.35 0.50 N 114 1 C5 B DA 13 ? ? N7 B DA 13 ? ? C8 B DA 13 ? ? 109.80 103.90 5.90 0.50 N 115 1 N3 B DA 13 ? ? C4 B DA 13 ? ? N9 B DA 13 ? ? 133.29 127.40 5.89 0.80 N 116 1 N1 B DA 13 ? ? C6 B DA 13 ? ? N6 B DA 13 ? ? 122.81 118.60 4.21 0.60 N 117 1 OP1 B DC 14 ? ? P B DC 14 ? ? OP2 B DC 14 ? ? 109.10 119.60 -10.50 1.50 N 118 1 "O4'" B DC 14 ? ? "C4'" B DC 14 ? ? "C3'" B DC 14 ? ? 100.21 104.50 -4.29 0.40 N 119 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 116.43 121.90 -5.47 0.40 N 120 1 C4 B DC 14 ? ? C5 B DC 14 ? ? C6 B DC 14 ? ? 121.11 117.40 3.71 0.50 N 121 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 123.49 118.90 4.59 0.60 N 122 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 115.98 121.90 -5.92 0.70 N 123 1 N3 B DC 14 ? ? C4 B DC 14 ? ? N4 B DC 14 ? ? 122.43 118.00 4.43 0.70 N 124 1 "C3'" B DC 14 ? ? "O3'" B DC 14 ? ? P B DT 15 ? ? 132.64 119.70 12.94 1.20 Y 125 1 OP1 B DT 15 ? ? P B DT 15 ? ? OP2 B DT 15 ? ? 107.73 119.60 -11.87 1.50 N 126 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 119.02 114.60 4.42 0.60 N 127 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 121.92 127.20 -5.28 0.60 N 128 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 118.38 124.90 -6.52 0.70 N 129 1 OP1 B DA 16 ? ? P B DA 16 ? ? OP2 B DA 16 ? ? 109.47 119.60 -10.13 1.50 N 130 1 N1 B DA 16 ? ? C2 B DA 16 ? ? N3 B DA 16 ? ? 122.78 129.30 -6.52 0.50 N 131 1 C2 B DA 16 ? ? N3 B DA 16 ? ? C4 B DA 16 ? ? 117.74 110.60 7.14 0.50 N 132 1 N3 B DA 16 ? ? C4 B DA 16 ? ? C5 B DA 16 ? ? 119.86 126.80 -6.94 0.70 N 133 1 C4 B DA 16 ? ? C5 B DA 16 ? ? C6 B DA 16 ? ? 122.53 117.00 5.53 0.50 N 134 1 C4 B DA 16 ? ? C5 B DA 16 ? ? N7 B DA 16 ? ? 105.25 110.70 -5.45 0.50 N 135 1 C5 B DA 16 ? ? N7 B DA 16 ? ? C8 B DA 16 ? ? 109.78 103.90 5.88 0.50 N 136 1 N3 B DA 16 ? ? C4 B DA 16 ? ? N9 B DA 16 ? ? 133.43 127.40 6.03 0.80 N 137 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 122.63 118.60 4.03 0.60 N 138 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DG 17 ? ? 127.37 119.70 7.67 1.20 Y 139 1 OP1 B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 110.08 119.60 -9.52 1.50 N 140 1 C2 B DG 17 ? ? N3 B DG 17 ? ? C4 B DG 17 ? ? 120.77 111.90 8.87 0.50 N 141 1 N3 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 118.82 128.60 -9.78 0.50 N 142 1 C5 B DG 17 ? ? C6 B DG 17 ? ? N1 B DG 17 ? ? 115.28 111.50 3.78 0.50 N 143 1 C4 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 101.43 110.80 -9.37 0.40 N 144 1 C5 B DG 17 ? ? N7 B DG 17 ? ? C8 B DG 17 ? ? 109.10 104.30 4.80 0.50 N 145 1 N9 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 111.56 105.40 6.16 0.40 N 146 1 N3 B DG 17 ? ? C4 B DG 17 ? ? N9 B DG 17 ? ? 129.62 126.00 3.62 0.60 N 147 1 C6 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 137.73 130.40 7.33 0.60 N 148 1 N1 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 124.74 119.90 4.84 0.60 N 149 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 119.97 128.60 -8.63 0.60 N 150 1 OP1 B DT 18 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 109.65 119.60 -9.95 1.50 N 151 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? "C2'" B DT 18 ? ? 99.10 105.90 -6.80 0.80 N 152 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.37 108.30 3.07 0.30 N 153 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 119.47 114.60 4.87 0.60 N 154 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 122.18 127.20 -5.02 0.60 N 155 1 C5 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 119.85 124.90 -5.05 0.70 N 156 1 OP1 B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 109.15 119.60 -10.45 1.50 N 157 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 116.63 121.90 -5.27 0.40 N 158 1 C4 B DC 19 ? ? C5 B DC 19 ? ? C6 B DC 19 ? ? 120.95 117.40 3.55 0.50 N 159 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 123.28 118.90 4.38 0.60 N 160 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.31 121.90 -5.59 0.70 N 161 1 N3 B DC 19 ? ? C4 B DC 19 ? ? N4 B DC 19 ? ? 122.82 118.00 4.82 0.70 N 162 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 109.31 119.60 -10.29 1.50 N 163 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? "C2'" B DG 20 ? ? 99.88 105.90 -6.02 0.80 N 164 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.07 108.30 2.77 0.30 N 165 1 C2 B DG 20 ? ? N3 B DG 20 ? ? C4 B DG 20 ? ? 120.89 111.90 8.99 0.50 N 166 1 N3 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 119.11 128.60 -9.49 0.50 N 167 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 115.25 111.50 3.75 0.50 N 168 1 C4 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 101.19 110.80 -9.61 0.40 N 169 1 C5 B DG 20 ? ? N7 B DG 20 ? ? C8 B DG 20 ? ? 109.19 104.30 4.89 0.50 N 170 1 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 111.69 105.40 6.29 0.40 N 171 1 C6 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 138.34 130.40 7.94 0.60 N 172 1 N1 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 124.57 119.90 4.67 0.60 N 173 1 C5 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 120.18 128.60 -8.42 0.60 N # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MNE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MNE _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.contents ;2 mM AIK-18/51, 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3', 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id AIK-18/51-1 2 ? mM ? 1 "5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'-2" 2 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H COSY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MNE _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 756 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 336 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 123 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2MNE _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 Goddard 'chemical shift assignment' Sparky ? 3 Goddard 'data analysis' Sparky ? 4 Goddard 'peak picking' Sparky ? 5 Tripos 'geometry optimization' SYBYL ? 6 Tripos 'structure solution' SYBYL ? 7 Tripos 'data analysis' SYBYL ? 8 Tripos 'structure generation' SYBYL ? 9 Tripos 'data analysis' MARDIGRAS ? 10 Tripos 'structure solution' MARDIGRAS ? 11 Tripos 'noe conversion to distances' MARDIGRAS ? 12 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'structure solution' Amber ? 13 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 14 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'geometry optimization' Amber ? 15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3B5 C10 C Y N 1 3B5 C8 C Y N 2 3B5 C6 C N N 3 3B5 C3 C Y N 4 3B5 C1 C Y N 5 3B5 C4 C Y N 6 3B5 C5 C Y N 7 3B5 C11 C Y N 8 3B5 N12 N Y N 9 3B5 C12 C N N 10 3B5 C13 C N N 11 3B5 C15 C Y N 12 3B5 C17 C Y N 13 3B5 N21 N N N 14 3B5 C20 C N N 15 3B5 C25 C N N 16 3B5 C27 C N N 17 3B5 C28 C N N 18 3B5 C32 C N N 19 3B5 C31 C N N 20 3B5 C19 C N N 21 3B5 C22 C Y N 22 3B5 C23 C Y N 23 3B5 C24 C Y N 24 3B5 C34 C N N 25 3B5 N33 N N N 26 3B5 C35 C N N 27 3B5 C30 C N N 28 3B5 N29 N N N 29 3B5 O28 O N N 30 3B5 N22 N Y N 31 3B5 C26 C N N 32 3B5 S22 S Y N 33 3B5 O20 O N N 34 3B5 N19 N Y N 35 3B5 C18 C Y N 36 3B5 C16 C Y N 37 3B5 N14 N N N 38 3B5 O13 O N N 39 3B5 C9 C Y N 40 3B5 N7 N N N 41 3B5 O6 O N N 42 3B5 N1 N Y N 43 3B5 C2 C Y N 44 3B5 H3 H N N 45 3B5 H1 H N N 46 3B5 H5 H N N 47 3B5 H11 H N N 48 3B5 H123 H N N 49 3B5 H121 H N N 50 3B5 H122 H N N 51 3B5 H21 H N N 52 3B5 H25 H N N 53 3B5 H273 H N N 54 3B5 H271 H N N 55 3B5 H272 H N N 56 3B5 H322 H N N 57 3B5 H321 H N N 58 3B5 H312 H N N 59 3B5 H311 H N N 60 3B5 H193 H N N 61 3B5 H192 H N N 62 3B5 H191 H N N 63 3B5 H341 H N N 64 3B5 H342 H N N 65 3B5 H343 H N N 66 3B5 H353 H N N 67 3B5 H352 H N N 68 3B5 H351 H N N 69 3B5 H302 H N N 70 3B5 H301 H N N 71 3B5 H29 H N N 72 3B5 H263 H N N 73 3B5 H261 H N N 74 3B5 H262 H N N 75 3B5 H18 H N N 76 3B5 H16 H N N 77 3B5 H14 H N N 78 3B5 H9 H N N 79 3B5 H7 H N N 80 3B5 H2 H N N 81 3B5 H33 H N N 82 DA OP3 O N N 83 DA P P N N 84 DA OP1 O N N 85 DA OP2 O N N 86 DA "O5'" O N N 87 DA "C5'" C N N 88 DA "C4'" C N R 89 DA "O4'" O N N 90 DA "C3'" C N S 91 DA "O3'" O N N 92 DA "C2'" C N N 93 DA "C1'" C N R 94 DA N9 N Y N 95 DA C8 C Y N 96 DA N7 N Y N 97 DA C5 C Y N 98 DA C6 C Y N 99 DA N6 N N N 100 DA N1 N Y N 101 DA C2 C Y N 102 DA N3 N Y N 103 DA C4 C Y N 104 DA HOP3 H N N 105 DA HOP2 H N N 106 DA "H5'" H N N 107 DA "H5''" H N N 108 DA "H4'" H N N 109 DA "H3'" H N N 110 DA "HO3'" H N N 111 DA "H2'" H N N 112 DA "H2''" H N N 113 DA "H1'" H N N 114 DA H8 H N N 115 DA H61 H N N 116 DA H62 H N N 117 DA H2 H N N 118 DC OP3 O N N 119 DC P P N N 120 DC OP1 O N N 121 DC OP2 O N N 122 DC "O5'" O N N 123 DC "C5'" C N N 124 DC "C4'" C N R 125 DC "O4'" O N N 126 DC "C3'" C N S 127 DC "O3'" O N N 128 DC "C2'" C N N 129 DC "C1'" C N R 130 DC N1 N N N 131 DC C2 C N N 132 DC O2 O N N 133 DC N3 N N N 134 DC C4 C N N 135 DC N4 N N N 136 DC C5 C N N 137 DC C6 C N N 138 DC HOP3 H N N 139 DC HOP2 H N N 140 DC "H5'" H N N 141 DC "H5''" H N N 142 DC "H4'" H N N 143 DC "H3'" H N N 144 DC "HO3'" H N N 145 DC "H2'" H N N 146 DC "H2''" H N N 147 DC "H1'" H N N 148 DC H41 H N N 149 DC H42 H N N 150 DC H5 H N N 151 DC H6 H N N 152 DG OP3 O N N 153 DG P P N N 154 DG OP1 O N N 155 DG OP2 O N N 156 DG "O5'" O N N 157 DG "C5'" C N N 158 DG "C4'" C N R 159 DG "O4'" O N N 160 DG "C3'" C N S 161 DG "O3'" O N N 162 DG "C2'" C N N 163 DG "C1'" C N R 164 DG N9 N Y N 165 DG C8 C Y N 166 DG N7 N Y N 167 DG C5 C Y N 168 DG C6 C N N 169 DG O6 O N N 170 DG N1 N N N 171 DG C2 C N N 172 DG N2 N N N 173 DG N3 N N N 174 DG C4 C Y N 175 DG HOP3 H N N 176 DG HOP2 H N N 177 DG "H5'" H N N 178 DG "H5''" H N N 179 DG "H4'" H N N 180 DG "H3'" H N N 181 DG "HO3'" H N N 182 DG "H2'" H N N 183 DG "H2''" H N N 184 DG "H1'" H N N 185 DG H8 H N N 186 DG H1 H N N 187 DG H21 H N N 188 DG H22 H N N 189 DT OP3 O N N 190 DT P P N N 191 DT OP1 O N N 192 DT OP2 O N N 193 DT "O5'" O N N 194 DT "C5'" C N N 195 DT "C4'" C N R 196 DT "O4'" O N N 197 DT "C3'" C N S 198 DT "O3'" O N N 199 DT "C2'" C N N 200 DT "C1'" C N R 201 DT N1 N N N 202 DT C2 C N N 203 DT O2 O N N 204 DT N3 N N N 205 DT C4 C N N 206 DT O4 O N N 207 DT C5 C N N 208 DT C7 C N N 209 DT C6 C N N 210 DT HOP3 H N N 211 DT HOP2 H N N 212 DT "H5'" H N N 213 DT "H5''" H N N 214 DT "H4'" H N N 215 DT "H3'" H N N 216 DT "HO3'" H N N 217 DT "H2'" H N N 218 DT "H2''" H N N 219 DT "H1'" H N N 220 DT H3 H N N 221 DT H71 H N N 222 DT H72 H N N 223 DT H73 H N N 224 DT H6 H N N 225 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3B5 C34 N33 sing N N 1 3B5 C27 C25 sing N N 2 3B5 C35 N33 sing N N 3 3B5 C32 N33 sing N N 4 3B5 C32 C31 sing N N 5 3B5 O28 C28 doub N N 6 3B5 C25 C26 sing N N 7 3B5 C25 C24 sing N N 8 3B5 C31 C30 sing N N 9 3B5 C30 N29 sing N N 10 3B5 C28 N29 sing N N 11 3B5 C28 C23 sing N N 12 3B5 C24 C23 doub Y N 13 3B5 C24 S22 sing Y N 14 3B5 C23 N22 sing Y N 15 3B5 S22 C22 sing Y N 16 3B5 N22 C22 doub Y N 17 3B5 C22 N21 sing N N 18 3B5 O20 C20 doub N N 19 3B5 N21 C20 sing N N 20 3B5 C20 C17 sing N N 21 3B5 C19 N19 sing N N 22 3B5 C17 N19 sing Y N 23 3B5 C17 C16 doub Y N 24 3B5 N19 C18 sing Y N 25 3B5 C16 C15 sing Y N 26 3B5 C18 C15 doub Y N 27 3B5 C15 N14 sing N N 28 3B5 N14 C13 sing N N 29 3B5 C13 O13 doub N N 30 3B5 C13 C10 sing N N 31 3B5 C10 C9 doub Y N 32 3B5 C10 N12 sing Y N 33 3B5 C9 C8 sing Y N 34 3B5 N12 C12 sing N N 35 3B5 N12 C11 sing Y N 36 3B5 C8 C11 doub Y N 37 3B5 C8 N7 sing N N 38 3B5 N7 C6 sing N N 39 3B5 C6 O6 doub N N 40 3B5 C6 C4 sing N N 41 3B5 C5 C4 doub Y N 42 3B5 C5 N1 sing Y N 43 3B5 C4 C3 sing Y N 44 3B5 N1 C1 doub Y N 45 3B5 C3 C2 doub Y N 46 3B5 C1 C2 sing Y N 47 3B5 C3 H3 sing N N 48 3B5 C1 H1 sing N N 49 3B5 C5 H5 sing N N 50 3B5 C11 H11 sing N N 51 3B5 C12 H123 sing N N 52 3B5 C12 H121 sing N N 53 3B5 C12 H122 sing N N 54 3B5 N21 H21 sing N N 55 3B5 C25 H25 sing N N 56 3B5 C27 H273 sing N N 57 3B5 C27 H271 sing N N 58 3B5 C27 H272 sing N N 59 3B5 C32 H322 sing N N 60 3B5 C32 H321 sing N N 61 3B5 C31 H312 sing N N 62 3B5 C31 H311 sing N N 63 3B5 C19 H193 sing N N 64 3B5 C19 H192 sing N N 65 3B5 C19 H191 sing N N 66 3B5 C34 H341 sing N N 67 3B5 C34 H342 sing N N 68 3B5 C34 H343 sing N N 69 3B5 C35 H353 sing N N 70 3B5 C35 H352 sing N N 71 3B5 C35 H351 sing N N 72 3B5 C30 H302 sing N N 73 3B5 C30 H301 sing N N 74 3B5 N29 H29 sing N N 75 3B5 C26 H263 sing N N 76 3B5 C26 H261 sing N N 77 3B5 C26 H262 sing N N 78 3B5 C18 H18 sing N N 79 3B5 C16 H16 sing N N 80 3B5 N14 H14 sing N N 81 3B5 C9 H9 sing N N 82 3B5 N7 H7 sing N N 83 3B5 C2 H2 sing N N 84 3B5 N33 H33 sing N N 85 DA OP3 P sing N N 86 DA OP3 HOP3 sing N N 87 DA P OP1 doub N N 88 DA P OP2 sing N N 89 DA P "O5'" sing N N 90 DA OP2 HOP2 sing N N 91 DA "O5'" "C5'" sing N N 92 DA "C5'" "C4'" sing N N 93 DA "C5'" "H5'" sing N N 94 DA "C5'" "H5''" sing N N 95 DA "C4'" "O4'" sing N N 96 DA "C4'" "C3'" sing N N 97 DA "C4'" "H4'" sing N N 98 DA "O4'" "C1'" sing N N 99 DA "C3'" "O3'" sing N N 100 DA "C3'" "C2'" sing N N 101 DA "C3'" "H3'" sing N N 102 DA "O3'" "HO3'" sing N N 103 DA "C2'" "C1'" sing N N 104 DA "C2'" "H2'" sing N N 105 DA "C2'" "H2''" sing N N 106 DA "C1'" N9 sing N N 107 DA "C1'" "H1'" sing N N 108 DA N9 C8 sing Y N 109 DA N9 C4 sing Y N 110 DA C8 N7 doub Y N 111 DA C8 H8 sing N N 112 DA N7 C5 sing Y N 113 DA C5 C6 sing Y N 114 DA C5 C4 doub Y N 115 DA C6 N6 sing N N 116 DA C6 N1 doub Y N 117 DA N6 H61 sing N N 118 DA N6 H62 sing N N 119 DA N1 C2 sing Y N 120 DA C2 N3 doub Y N 121 DA C2 H2 sing N N 122 DA N3 C4 sing Y N 123 DC OP3 P sing N N 124 DC OP3 HOP3 sing N N 125 DC P OP1 doub N N 126 DC P OP2 sing N N 127 DC P "O5'" sing N N 128 DC OP2 HOP2 sing N N 129 DC "O5'" "C5'" sing N N 130 DC "C5'" "C4'" sing N N 131 DC "C5'" "H5'" sing N N 132 DC "C5'" "H5''" sing N N 133 DC "C4'" "O4'" sing N N 134 DC "C4'" "C3'" sing N N 135 DC "C4'" "H4'" sing N N 136 DC "O4'" "C1'" sing N N 137 DC "C3'" "O3'" sing N N 138 DC "C3'" "C2'" sing N N 139 DC "C3'" "H3'" sing N N 140 DC "O3'" "HO3'" sing N N 141 DC "C2'" "C1'" sing N N 142 DC "C2'" "H2'" sing N N 143 DC "C2'" "H2''" sing N N 144 DC "C1'" N1 sing N N 145 DC "C1'" "H1'" sing N N 146 DC N1 C2 sing N N 147 DC N1 C6 sing N N 148 DC C2 O2 doub N N 149 DC C2 N3 sing N N 150 DC N3 C4 doub N N 151 DC C4 N4 sing N N 152 DC C4 C5 sing N N 153 DC N4 H41 sing N N 154 DC N4 H42 sing N N 155 DC C5 C6 doub N N 156 DC C5 H5 sing N N 157 DC C6 H6 sing N N 158 DG OP3 P sing N N 159 DG OP3 HOP3 sing N N 160 DG P OP1 doub N N 161 DG P OP2 sing N N 162 DG P "O5'" sing N N 163 DG OP2 HOP2 sing N N 164 DG "O5'" "C5'" sing N N 165 DG "C5'" "C4'" sing N N 166 DG "C5'" "H5'" sing N N 167 DG "C5'" "H5''" sing N N 168 DG "C4'" "O4'" sing N N 169 DG "C4'" "C3'" sing N N 170 DG "C4'" "H4'" sing N N 171 DG "O4'" "C1'" sing N N 172 DG "C3'" "O3'" sing N N 173 DG "C3'" "C2'" sing N N 174 DG "C3'" "H3'" sing N N 175 DG "O3'" "HO3'" sing N N 176 DG "C2'" "C1'" sing N N 177 DG "C2'" "H2'" sing N N 178 DG "C2'" "H2''" sing N N 179 DG "C1'" N9 sing N N 180 DG "C1'" "H1'" sing N N 181 DG N9 C8 sing Y N 182 DG N9 C4 sing Y N 183 DG C8 N7 doub Y N 184 DG C8 H8 sing N N 185 DG N7 C5 sing Y N 186 DG C5 C6 sing N N 187 DG C5 C4 doub Y N 188 DG C6 O6 doub N N 189 DG C6 N1 sing N N 190 DG N1 C2 sing N N 191 DG N1 H1 sing N N 192 DG C2 N2 sing N N 193 DG C2 N3 doub N N 194 DG N2 H21 sing N N 195 DG N2 H22 sing N N 196 DG N3 C4 sing N N 197 DT OP3 P sing N N 198 DT OP3 HOP3 sing N N 199 DT P OP1 doub N N 200 DT P OP2 sing N N 201 DT P "O5'" sing N N 202 DT OP2 HOP2 sing N N 203 DT "O5'" "C5'" sing N N 204 DT "C5'" "C4'" sing N N 205 DT "C5'" "H5'" sing N N 206 DT "C5'" "H5''" sing N N 207 DT "C4'" "O4'" sing N N 208 DT "C4'" "C3'" sing N N 209 DT "C4'" "H4'" sing N N 210 DT "O4'" "C1'" sing N N 211 DT "C3'" "O3'" sing N N 212 DT "C3'" "C2'" sing N N 213 DT "C3'" "H3'" sing N N 214 DT "O3'" "HO3'" sing N N 215 DT "C2'" "C1'" sing N N 216 DT "C2'" "H2'" sing N N 217 DT "C2'" "H2''" sing N N 218 DT "C1'" N1 sing N N 219 DT "C1'" "H1'" sing N N 220 DT N1 C2 sing N N 221 DT N1 C6 sing N N 222 DT C2 O2 doub N N 223 DT C2 N3 sing N N 224 DT N3 C4 sing N N 225 DT N3 H3 sing N N 226 DT C4 O4 doub N N 227 DT C4 C5 sing N N 228 DT C5 C7 sing N N 229 DT C5 C6 doub N N 230 DT C7 H71 sing N N 231 DT C7 H72 sing N N 232 DT C7 H73 sing N N 233 DT C6 H6 sing N N 234 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MNE 'double helix' 2MNE 'b-form double helix' 2MNE 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.283 -0.436 1.398 -14.192 -8.914 -6.787 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 -0.315 -0.100 0.038 -2.694 -10.108 -5.432 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.735 -0.247 -1.458 -17.439 -13.799 6.132 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.220 -0.121 0.298 -14.640 -1.020 -2.819 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -1.466 -0.117 1.053 4.339 -34.276 -28.016 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.814 -0.010 1.689 9.851 -31.179 -14.033 6 A_DA6:DT15_B A 6 ? B 15 ? ? ? 1 A DG 7 1_555 B DC 4 1_555 -0.874 -0.142 -0.764 -20.705 -31.762 3.729 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.026 -0.214 -0.536 -10.391 -30.842 10.556 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.263 -0.076 0.205 -5.667 -5.466 -4.652 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.172 -0.387 1.339 12.988 -9.528 -5.822 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.454 -1.848 2.366 10.987 -2.782 31.965 -2.847 2.064 2.242 -4.865 -19.211 33.865 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 1.864 -0.004 3.715 12.797 6.315 44.976 -0.636 -1.056 4.038 8.020 -16.251 47.074 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -1.978 -0.109 3.003 -16.086 23.420 24.691 -3.487 0.800 2.767 41.063 28.205 37.474 3 AA_DA3DC4:DG17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DA 6 1_555 -2.030 0.679 3.105 -1.699 -13.445 23.749 4.521 3.912 2.502 -29.768 3.761 27.295 4 AA_DC4DT5:DA16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.686 -0.460 2.711 -0.033 -2.317 49.476 -0.407 -0.821 2.728 -2.767 0.039 49.527 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 2.159 0.570 4.688 13.025 19.724 33.439 -2.693 -0.781 4.812 30.065 -19.854 40.754 6 AA_DA6DG7:DC14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 0.414 0.606 2.633 0.785 0.398 36.031 0.933 -0.579 2.648 0.643 -1.269 36.042 7 AA_DG7DT8:DA13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.437 -0.618 3.073 -3.774 14.859 31.215 -3.110 0.205 2.562 25.758 6.542 34.693 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 0.156 -1.951 2.149 -8.486 -1.034 30.358 -3.465 -1.332 2.094 -1.926 15.814 31.511 9 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2MNE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_