HEADER ELECTRON TRANSPORT 27-APR-14 2MOK TITLE HOLO_FLDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K-12 SUBSTR. MC4100; SOURCE 3 ORGANISM_TAXID: 1403831; SOURCE 4 GENE: FLDA, BN896_0545; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21A(+) KEYWDS ALPHA/BETA/ALPHA SANDWICH FOLD, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.JIN,Y.HU,Q.YE REVDAT 3 15-MAY-24 2MOK 1 REMARK REVDAT 2 14-JUN-23 2MOK 1 REMARK REVDAT 1 20-MAY-15 2MOK 0 JRNL AUTH C.JIN,Y.HU,Q.YE JRNL TITL NMR STUDY OF YQCA FROM ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000103863. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 180 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PROTEIN-1, 30 REMARK 210 MM SODIUM PHOSPHATE-2, 40 MM DTT- REMARK 210 3, 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN-4, 30 REMARK 210 MM SODIUM PHOSPHATE-5, 40 MM DTT- REMARK 210 6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HBHA(CO)NH; 3D HNCO; REMARK 210 3D HCCH-COSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 9 HG1 THR A 15 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 11 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 12 ARG A 106 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 ARG A 106 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 18 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 19 ARG A 106 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 11 -58.40 -144.49 REMARK 500 1 TYR A 58 64.20 28.73 REMARK 500 1 GLN A 91 16.49 -147.15 REMARK 500 1 TYR A 94 42.59 -83.91 REMARK 500 1 ARG A 148 6.90 58.24 REMARK 500 2 TYR A 58 -91.79 51.06 REMARK 500 2 TYR A 59 81.61 -152.57 REMARK 500 2 TYR A 97 23.79 -141.06 REMARK 500 2 TYR A 125 -25.56 50.28 REMARK 500 2 GLU A 146 18.85 -153.62 REMARK 500 2 ASP A 147 -63.07 -140.98 REMARK 500 2 ARG A 148 -32.09 -171.33 REMARK 500 2 HIS A 169 19.11 50.12 REMARK 500 3 TYR A 58 -79.53 58.55 REMARK 500 3 TYR A 59 51.41 -152.18 REMARK 500 3 TYR A 94 32.97 -83.15 REMARK 500 3 TYR A 97 16.56 -140.91 REMARK 500 3 TYR A 125 -100.89 54.83 REMARK 500 3 ASP A 145 148.30 71.98 REMARK 500 3 GLU A 146 15.23 -148.29 REMARK 500 3 ASP A 147 -75.50 -154.05 REMARK 500 3 GLN A 149 136.75 61.28 REMARK 500 4 ASP A 11 -54.78 -122.09 REMARK 500 4 GLU A 92 -112.32 -131.06 REMARK 500 4 TYR A 94 34.06 -82.98 REMARK 500 4 GLU A 146 10.91 -153.47 REMARK 500 4 ASP A 147 -67.39 -144.53 REMARK 500 4 ARG A 148 112.24 -168.65 REMARK 500 4 GLN A 149 149.01 58.41 REMARK 500 5 ASP A 11 -52.89 -121.68 REMARK 500 5 GLU A 146 -65.16 -126.39 REMARK 500 5 ARG A 148 95.21 48.60 REMARK 500 5 GLN A 149 138.00 66.99 REMARK 500 5 GLU A 151 174.13 57.56 REMARK 500 6 ASP A 11 -52.53 -137.98 REMARK 500 6 TYR A 58 82.27 21.52 REMARK 500 6 TYR A 94 40.46 -98.19 REMARK 500 6 HIS A 126 57.50 -144.96 REMARK 500 6 GLU A 146 -63.25 -139.98 REMARK 500 6 ASP A 147 94.45 -160.24 REMARK 500 6 ARG A 148 87.75 53.41 REMARK 500 6 GLN A 149 148.91 74.93 REMARK 500 7 ASP A 11 -48.05 -138.74 REMARK 500 7 TYR A 58 -89.17 54.49 REMARK 500 7 TYR A 59 62.12 -151.02 REMARK 500 7 TYR A 94 44.72 -91.94 REMARK 500 7 ALA A 129 118.98 -161.89 REMARK 500 7 ASP A 145 146.11 -172.10 REMARK 500 7 ASP A 147 -52.37 -169.31 REMARK 500 7 GLN A 149 147.52 67.64 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 ARG A 106 0.08 SIDE CHAIN REMARK 500 8 ARG A 148 0.09 SIDE CHAIN REMARK 500 15 ARG A 156 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19945 RELATED DB: BMRB DBREF 2MOK A 1 176 UNP U6N8Z0 U6N8Z0_ECOLI 1 176 SEQRES 1 A 176 MET ALA ILE THR GLY ILE PHE PHE GLY SER ASP THR GLY SEQRES 2 A 176 ASN THR GLU ASN ILE ALA LYS MET ILE GLN LYS GLN LEU SEQRES 3 A 176 GLY LYS ASP VAL ALA ASP VAL HIS ASP ILE ALA LYS SER SEQRES 4 A 176 SER LYS GLU ASP LEU GLU ALA TYR ASP ILE LEU LEU LEU SEQRES 5 A 176 GLY ILE PRO THR TRP TYR TYR GLY GLU ALA GLN CYS ASP SEQRES 6 A 176 TRP ASP ASP PHE PHE PRO THR LEU GLU GLU ILE ASP PHE SEQRES 7 A 176 ASN GLY LYS LEU VAL ALA LEU PHE GLY CYS GLY ASP GLN SEQRES 8 A 176 GLU ASP TYR ALA GLU TYR PHE CYS ASP ALA LEU GLY THR SEQRES 9 A 176 ILE ARG ASP ILE ILE GLU PRO ARG GLY ALA THR ILE VAL SEQRES 10 A 176 GLY HIS TRP PRO THR ALA GLY TYR HIS PHE GLU ALA SER SEQRES 11 A 176 LYS GLY LEU ALA ASP ASP ASP HIS PHE VAL GLY LEU ALA SEQRES 12 A 176 ILE ASP GLU ASP ARG GLN PRO GLU LEU THR ALA GLU ARG SEQRES 13 A 176 VAL GLU LYS TRP VAL LYS GLN ILE SER GLU GLU LEU HIS SEQRES 14 A 176 LEU ASP GLU ILE LEU ASN ALA HET FMN A 201 50 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P HELIX 1 1 GLY A 13 GLY A 27 1 15 HELIX 2 2 ASP A 35 SER A 39 5 5 HELIX 3 3 SER A 40 ALA A 46 1 7 HELIX 4 4 GLN A 63 GLU A 74 1 12 HELIX 5 5 ASP A 100 GLU A 110 1 11 HELIX 6 6 LEU A 152 LEU A 168 1 17 HELIX 7 7 LEU A 170 ASN A 175 1 6 SHEET 1 A 5 ALA A 31 HIS A 34 0 SHEET 2 A 5 THR A 4 PHE A 8 1 N ILE A 6 O ASP A 32 SHEET 3 A 5 ILE A 49 GLY A 53 1 O GLY A 53 N PHE A 7 SHEET 4 A 5 LEU A 82 CYS A 88 1 O LEU A 82 N LEU A 50 SHEET 5 A 5 THR A 115 ILE A 116 1 O THR A 115 N VAL A 83 SHEET 1 B 5 ALA A 31 HIS A 34 0 SHEET 2 B 5 THR A 4 PHE A 8 1 N ILE A 6 O ASP A 32 SHEET 3 B 5 ILE A 49 GLY A 53 1 O GLY A 53 N PHE A 7 SHEET 4 B 5 LEU A 82 CYS A 88 1 O LEU A 82 N LEU A 50 SHEET 5 B 5 LEU A 142 ILE A 144 1 O ILE A 144 N GLY A 87 SHEET 1 C 2 THR A 56 TRP A 57 0 SHEET 2 C 2 GLU A 61 ALA A 62 -1 O GLU A 61 N TRP A 57 SHEET 1 D 3 TRP A 120 PRO A 121 0 SHEET 2 D 3 HIS A 138 PHE A 139 -1 O PHE A 139 N TRP A 120 SHEET 3 D 3 LEU A 133 ASP A 135 -1 N ALA A 134 O HIS A 138 SITE 1 AC1 18 SER A 10 ASP A 11 THR A 12 GLY A 13 SITE 2 AC1 18 ASN A 14 THR A 15 PRO A 55 THR A 56 SITE 3 AC1 18 TRP A 57 TYR A 58 TYR A 59 GLY A 60 SITE 4 AC1 18 GLY A 89 ASP A 90 TYR A 94 TYR A 97 SITE 5 AC1 18 PHE A 98 CYS A 99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1