HEADER TRANSCRIPTION 06-MAY-14 2MOW TITLE STRUCTURE OF NRD1P CID - TRF4P NIM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NRD1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CID (UNP RESIDUES 1-153); COMPND 5 SYNONYM: NRD1P; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLY(A) RNA POLYMERASE PROTEIN 2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: NIM (UNP RESIDUES 573-584); COMPND 11 SYNONYM: TRF4P, DNA POLYMERASE KAPPA, DNA POLYMERASE SIGMA, COMPND 12 TOPOISOMERASE 1-RELATED PROTEIN TRF4; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NRD1, YNL251C, N0868; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932 KEYWDS TRANSCRIPTION TERMINATION, RNA DEGRADATION, RNAP II CTD, PROTEIN- KEYWDS 2 PROTEIN INTERACTION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.KABZINSKI,R.STEFL,K.KUBICEK REVDAT 3 14-JUN-23 2MOW 1 REMARK SEQADV REVDAT 2 20-AUG-14 2MOW 1 JRNL REVDAT 1 13-AUG-14 2MOW 0 JRNL AUTH A.TUDEK,O.PORRUA,T.KABZINSKI,M.LIDSCHREIBER,K.KUBICEK, JRNL AUTH 2 A.FORTOVA,F.LACROUTE,S.VANACOVA,P.CRAMER,R.STEFL,D.LIBRI JRNL TITL MOLECULAR BASIS FOR COORDINATING TRANSCRIPTION TERMINATION JRNL TITL 2 WITH NONCODING RNA DEGRADATION. JRNL REF MOL.CELL V. 55 467 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25066235 JRNL DOI 10.1016/J.MOLCEL.2014.05.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000103874. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM TRF4P, 1 MM [U-99% 13C; U REMARK 210 -99% 15N] NRD1P, 100 MM SODIUM REMARK 210 CHLORIDE, 50 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 F1-13C/15N-FILTERED NOESY-[13C, REMARK 210 1H]-HSQC; 2D F1, F2-13C/15N- REMARK 210 FILTERED [1H,1H]-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 6 -164.14 -72.08 REMARK 500 1 PHE A 10 -70.99 -55.30 REMARK 500 1 LYS A 21 62.00 -106.56 REMARK 500 1 ILE A 24 80.14 58.94 REMARK 500 1 THR A 33 -70.27 -58.03 REMARK 500 1 ILE A 42 29.24 -150.81 REMARK 500 1 SER A 44 -73.15 -59.48 REMARK 500 1 ILE A 46 -72.51 -56.30 REMARK 500 1 LEU A 56 -78.17 -51.29 REMARK 500 1 PRO A 58 -158.52 -69.75 REMARK 500 1 SER A 60 -77.99 -35.09 REMARK 500 1 ASN A 83 -74.63 -107.43 REMARK 500 1 SER A 84 114.56 -176.86 REMARK 500 1 SER A 88 -63.44 -139.01 REMARK 500 1 LYS A 90 153.85 64.34 REMARK 500 1 GLN A 106 -72.77 -51.79 REMARK 500 1 ASP A 119 -74.20 -61.74 REMARK 500 1 LEU A 136 -77.21 -71.56 REMARK 500 1 TYR A 141 92.11 56.46 REMARK 500 1 ALA A 144 -95.94 -33.85 REMARK 500 1 GLU A 155 97.08 -54.56 REMARK 500 1 HIS A 156 -174.85 -60.26 REMARK 500 1 HIS A 157 99.37 -63.27 REMARK 500 1 HIS A 158 147.59 -172.80 REMARK 500 1 HIS A 160 -177.06 -171.26 REMARK 500 1 ASP B1003 33.47 -159.04 REMARK 500 2 ASP A 6 -164.21 -105.01 REMARK 500 2 PHE A 10 -70.57 -55.57 REMARK 500 2 LEU A 20 175.69 -54.64 REMARK 500 2 THR A 33 -71.33 -57.60 REMARK 500 2 ILE A 42 29.95 -143.25 REMARK 500 2 SER A 44 -72.88 -58.40 REMARK 500 2 ILE A 46 -70.77 -55.80 REMARK 500 2 SER A 54 -72.94 -63.69 REMARK 500 2 LEU A 56 -81.92 -60.80 REMARK 500 2 PRO A 58 -99.85 -69.71 REMARK 500 2 LYS A 62 -77.01 -37.83 REMARK 500 2 GLU A 79 -72.41 -56.16 REMARK 500 2 ASN A 83 -75.82 -75.07 REMARK 500 2 SER A 84 146.33 -176.18 REMARK 500 2 SER A 88 -169.45 -125.55 REMARK 500 2 ASN A 89 170.88 -56.23 REMARK 500 2 LYS A 90 160.59 63.09 REMARK 500 2 THR A 93 -174.02 -171.52 REMARK 500 2 GLN A 106 -74.05 -48.29 REMARK 500 2 LEU A 108 -71.66 -56.14 REMARK 500 2 SER A 116 143.02 -39.06 REMARK 500 2 SER A 134 -73.77 -55.11 REMARK 500 2 LEU A 136 -73.60 -123.20 REMARK 500 2 LEU A 142 88.90 -65.57 REMARK 500 REMARK 500 THIS ENTRY HAS 568 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19954 RELATED DB: BMRB DBREF 2MOW A 1 153 UNP P53617 NRD1_YEAST 1 153 DBREF 2MOW B 1001 1012 UNP P53632 PAP2_YEAST 573 584 SEQADV 2MOW LEU A 154 UNP P53617 EXPRESSION TAG SEQADV 2MOW GLU A 155 UNP P53617 EXPRESSION TAG SEQADV 2MOW HIS A 156 UNP P53617 EXPRESSION TAG SEQADV 2MOW HIS A 157 UNP P53617 EXPRESSION TAG SEQADV 2MOW HIS A 158 UNP P53617 EXPRESSION TAG SEQADV 2MOW HIS A 159 UNP P53617 EXPRESSION TAG SEQADV 2MOW HIS A 160 UNP P53617 EXPRESSION TAG SEQADV 2MOW HIS A 161 UNP P53617 EXPRESSION TAG SEQRES 1 A 161 MET GLN GLN ASP ASP ASP PHE GLN ASN PHE VAL ALA THR SEQRES 2 A 161 LEU GLU SER PHE LYS ASP LEU LYS SER GLY ILE SER GLY SEQRES 3 A 161 SER ARG ILE LYS LYS LEU THR THR TYR ALA LEU ASP HIS SEQRES 4 A 161 ILE ASP ILE GLU SER LYS ILE ILE SER LEU ILE ILE ASP SEQRES 5 A 161 TYR SER ARG LEU CYS PRO ASP SER HIS LYS LEU GLY SER SEQRES 6 A 161 LEU TYR ILE ILE ASP SER ILE GLY ARG ALA TYR LEU ASP SEQRES 7 A 161 GLU THR ARG SER ASN SER ASN SER SER SER ASN LYS PRO SEQRES 8 A 161 GLY THR CYS ALA HIS ALA ILE ASN THR LEU GLY GLU VAL SEQRES 9 A 161 ILE GLN GLU LEU LEU SER ASP ALA ILE ALA LYS SER ASN SEQRES 10 A 161 GLN ASP HIS LYS GLU LYS ILE ARG MET LEU LEU ASP ILE SEQRES 11 A 161 TRP ASP ARG SER GLY LEU PHE GLN LYS SER TYR LEU ASN SEQRES 12 A 161 ALA ILE ARG SER LYS CYS PHE ALA MET ASP LEU GLU HIS SEQRES 13 A 161 HIS HIS HIS HIS HIS SEQRES 1 B 12 ASP ASP ASP GLU ASP GLY TYR ASN PRO TYR THR LEU HELIX 1 1 ASP A 6 LEU A 20 1 15 HELIX 2 2 SER A 25 HIS A 39 1 15 HELIX 3 3 ILE A 42 CYS A 57 1 16 HELIX 4 4 PRO A 58 SER A 84 1 27 HELIX 5 5 THR A 93 GLU A 103 1 11 HELIX 6 6 VAL A 104 SER A 116 1 13 HELIX 7 7 ASN A 117 GLY A 135 1 19 HELIX 8 8 LEU A 142 SER A 147 1 6 HELIX 9 9 LYS A 148 GLU A 155 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1