HEADER ANTIMICROBIAL PROTEIN 13-MAY-14 2MP8 TITLE NMR STRUCTURE OF NKR-5-3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKR-5-3B; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 STRAIN: NKR-5-3 KEYWDS BACTERIOCIN, ANTIMICROBIAL PEPTIDE, HEAD-TO-TAIL CYCLIC, HELIX KEYWDS 2 BUNDLE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.J.ROSENGREN,D.J.CRAIK REVDAT 2 01-JUN-16 2MP8 1 JRNL REVDAT 1 13-MAY-15 2MP8 0 JRNL AUTH K.HIMENO,K.J.ROSENGREN,T.INOUE,R.H.PEREZ,M.L.COLGRAVE, JRNL AUTH 2 H.S.LEE,L.Y.CHAN,S.T.HENRIQUES,K.FUJITA,N.ISHIBASHI,T.ZENDO, JRNL AUTH 3 P.WILAIPUN,J.NAKAYAMA,V.LEELAWATCHARAMAS,H.JIKUYA,D.J.CRAIK, JRNL AUTH 4 K.SONOMOTO JRNL TITL IDENTIFICATION, CHARACTERIZATION, AND THREE-DIMENSIONAL JRNL TITL 2 STRUCTURE OF THE NOVEL CIRCULAR BACTERIOCIN, ENTEROCIN JRNL TITL 3 NKR-5-3B, FROM ENTEROCOCCUS FAECIUM JRNL REF BIOCHEMISTRY V. 54 4863 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26174911 JRNL DOI 10.1021/ACS.BIOCHEM.5B00196 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES GENERATED BY TORSION ANGEL REMARK 3 DYNAMICS AND REFINED IN EXPLICIT WATER USING CARTESIAN DYNAMICS. REMARK 4 REMARK 4 2MP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB103886. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 6 MG/ML NKR-5-3B-1, 90% H2O/10% REMARK 210 D2O; 6 MG/ML NKR-5-3B-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CARA, CYANA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 23 -71.62 -102.45 REMARK 500 2 SER A 23 -71.45 -103.88 REMARK 500 3 SER A 23 -88.72 -93.56 REMARK 500 4 SER A 23 -71.74 -102.93 REMARK 500 5 SER A 23 -86.34 -99.13 REMARK 500 6 SER A 23 -77.17 -109.55 REMARK 500 6 LEU A 40 -70.17 -68.56 REMARK 500 7 SER A 23 -76.17 -94.12 REMARK 500 8 SER A 23 -73.18 -93.65 REMARK 500 8 LEU A 40 -71.00 -88.57 REMARK 500 9 SER A 23 -71.95 -101.91 REMARK 500 9 LEU A 40 -75.56 -90.66 REMARK 500 10 SER A 23 -74.31 -97.88 REMARK 500 10 LEU A 40 -80.09 -96.77 REMARK 500 11 SER A 23 -74.78 -93.53 REMARK 500 12 SER A 23 -74.19 -95.11 REMARK 500 13 SER A 23 -73.38 -97.07 REMARK 500 13 LEU A 40 -78.30 -89.07 REMARK 500 14 SER A 23 -76.83 -99.01 REMARK 500 14 LEU A 40 -70.05 -86.85 REMARK 500 15 SER A 23 -78.28 -102.98 REMARK 500 15 LEU A 40 -82.77 -85.62 REMARK 500 16 SER A 23 -76.35 -111.76 REMARK 500 16 LEU A 40 -72.54 -85.19 REMARK 500 17 SER A 23 -85.84 -99.55 REMARK 500 18 SER A 23 -69.92 -96.09 REMARK 500 18 LEU A 40 -80.07 -102.46 REMARK 500 19 SER A 23 -74.55 -100.67 REMARK 500 19 LEU A 40 -74.50 -94.67 REMARK 500 20 SER A 23 -75.72 -105.17 REMARK 500 20 LEU A 40 -75.60 -92.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19970 RELATED DB: BMRB DBREF 2MP8 A 1 64 PDB 2MP8 2MP8 1 64 SEQRES 1 A 64 LEU THR ALA ASN LEU GLY ILE SER SER TYR ALA ALA LYS SEQRES 2 A 64 LYS VAL ILE ASP ILE ILE ASN THR GLY SER ALA VAL ALA SEQRES 3 A 64 THR ILE ILE ALA LEU VAL THR ALA VAL VAL GLY GLY GLY SEQRES 4 A 64 LEU ILE THR ALA GLY ILE VAL ALA THR ALA LYS SER LEU SEQRES 5 A 64 ILE LYS LYS TYR GLY ALA LYS TYR ALA ALA ALA TRP HELIX 1 1 LEU A 1 GLY A 6 1 6 HELIX 2 2 SER A 8 GLY A 22 1 15 HELIX 3 3 ALA A 24 GLY A 37 1 14 HELIX 4 4 THR A 42 TYR A 56 1 15 HELIX 5 5 GLY A 57 TRP A 64 1 8 LINK N LEU A 1 C TRP A 64 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1