HEADER TRANSCRIPTION 26-MAY-14 2MPL TITLE SOLUTION STRUCTURE OF THE PR DOMAIN OF FOG-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN ZFPM1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FRIEND OF GATA PROTEIN 1, FOG-1, FRIEND OF GATA 1, ZINC COMPND 5 FINGER PROTEIN MULTITYPE 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FOG, FOG1, ZFPM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS PR DOMAIN, FOG-1, GATA-1, TRANSCRIPTION, ZINC-FINGER PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.P.MACKAY,M.K.CLIFTON,B.J.WESTMAN,G.A.BLOBEL REVDAT 3 15-MAY-24 2MPL 1 REMARK REVDAT 2 14-JUN-23 2MPL 1 REMARK REVDAT 1 29-OCT-14 2MPL 0 JRNL AUTH M.K.CLIFTON,B.J.WESTMAN,S.Y.THONG,M.R.O'CONNELL,M.W.WEBSTER, JRNL AUTH 2 N.E.SHEPHERD,K.G.QUINLAN,M.CROSSLEY,G.A.BLOBEL,J.P.MACKAY JRNL TITL THE IDENTIFICATION AND STRUCTURE OF AN N-TERMINAL PR DOMAIN JRNL TITL 2 SHOW THAT FOG1 IS A MEMBER OF THE PRDM FAMILY OF PROTEINS. JRNL REF PLOS ONE V. 9 06011 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25162672 JRNL DOI 10.1371/JOURNAL.PONE.0106011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL STRUCTURE CALCULATIONS REMARK 3 INCLUDING AUTOMATED NOE ASSIGNMENT CARRIED OUT IN CYANA. REMARK 3 CALCULATIONS CARRIED OUT WITH ITERATIVE MANUAL ASSIGNMENT UNTIL REMARK 3 NO RESTRAINT VIOLATIONS REMAINED., RECOORD PROTOCOL CARRIED OUT REMARK 3 USING UNAMBIGUOUS RESTRAINT LIST DERIVED FROM CYANA REMARK 3 CALCULATIONS. 500 STRUCTURES CALCULATED USING SIMULATED REMARK 3 ANNEALING AND THE TOP 40 SUBJECT TO WATER REFINEMENT. TOP 20 REMARK 3 FROM THESE WERE USED TO REPRESENT THE FINAL STRUCTURE. REMARK 4 REMARK 4 2MPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000103898. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.06 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM FOG-1 PR, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.01 MM DSS, 95% H2O/ REMARK 210 5% D2O; 0.5-1 MM [U-100% 15N] REMARK 210 FOG-1 PR, 20 MM SODIUM PHOSPHATE, REMARK 210 0.01 MM DSS, 95% H2O/5% D2O; REMARK 210 0.5-1 MM [U-100% 13C; U-100% 15N] REMARK 210 FOG-1 PR, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.01 MM DSS, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HCCH-TOCSY; 3D HNHA; 3D REMARK 210 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D HCCH-COSY; 3D HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3, CNS, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 146 -74.99 -111.09 REMARK 500 1 GLU A 148 71.45 63.97 REMARK 500 1 ASP A 184 -14.77 73.71 REMARK 500 1 PRO A 208 92.58 -67.76 REMARK 500 1 ARG A 213 -171.70 66.19 REMARK 500 1 PRO A 215 100.95 -59.11 REMARK 500 1 GLU A 221 76.74 64.76 REMARK 500 1 LEU A 225 -49.93 70.75 REMARK 500 2 PRO A 104 150.57 -44.35 REMARK 500 2 ARG A 140 -67.74 -103.05 REMARK 500 2 HIS A 209 -72.53 73.12 REMARK 500 2 ALA A 211 87.41 75.33 REMARK 500 2 LEU A 225 -46.96 174.64 REMARK 500 3 ALA A 141 64.35 63.65 REMARK 500 3 ASP A 184 -13.16 70.59 REMARK 500 3 VAL A 205 55.26 -115.82 REMARK 500 3 HIS A 209 -160.52 64.21 REMARK 500 3 HIS A 214 173.74 67.92 REMARK 500 3 PRO A 215 41.45 -70.34 REMARK 500 3 GLU A 221 103.56 63.10 REMARK 500 3 LEU A 225 87.16 61.35 REMARK 500 4 ARG A 140 -45.38 -167.52 REMARK 500 4 PRO A 144 -71.52 -56.03 REMARK 500 4 ARG A 146 -53.38 -152.37 REMARK 500 4 PRO A 208 32.62 -68.68 REMARK 500 4 HIS A 209 137.10 74.33 REMARK 500 4 ALA A 211 -55.06 -124.34 REMARK 500 4 VAL A 216 87.32 66.80 REMARK 500 5 ALA A 141 41.63 -81.47 REMARK 500 5 PRO A 144 -154.80 -96.98 REMARK 500 5 GLU A 148 148.84 67.78 REMARK 500 5 VAL A 216 -69.75 67.51 REMARK 500 6 TRP A 101 109.15 -59.88 REMARK 500 6 SER A 102 -51.02 65.94 REMARK 500 6 PRO A 144 -155.83 -91.10 REMARK 500 6 ARG A 146 -169.04 -114.90 REMARK 500 6 VAL A 205 93.90 -61.28 REMARK 500 6 PRO A 208 109.36 -56.37 REMARK 500 6 ALA A 211 145.45 71.72 REMARK 500 7 PRO A 144 -149.17 -74.89 REMARK 500 7 ASP A 184 64.24 63.19 REMARK 500 7 VAL A 205 104.24 -50.63 REMARK 500 7 GLU A 221 152.81 71.11 REMARK 500 8 ASP A 113 13.14 59.10 REMARK 500 8 ARG A 146 -45.99 -164.45 REMARK 500 8 VAL A 205 132.24 -39.49 REMARK 500 8 ARG A 213 102.10 76.34 REMARK 500 8 GLN A 217 118.07 68.37 REMARK 500 8 VAL A 220 -65.71 71.67 REMARK 500 8 GLU A 221 -52.47 -158.59 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 146 0.09 SIDE CHAIN REMARK 500 5 ARG A 189 0.09 SIDE CHAIN REMARK 500 7 ARG A 140 0.08 SIDE CHAIN REMARK 500 10 ARG A 121 0.09 SIDE CHAIN REMARK 500 13 ARG A 146 0.09 SIDE CHAIN REMARK 500 13 ARG A 203 0.08 SIDE CHAIN REMARK 500 15 ARG A 203 0.10 SIDE CHAIN REMARK 500 19 ARG A 189 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19988 RELATED DB: BMRB DBREF 2MPL A 100 226 UNP O35615 FOG1_MOUSE 100 226 SEQRES 1 A 127 PRO TRP SER GLY PRO GLU GLU LEU GLU LEU ALA LEU GLN SEQRES 2 A 127 ASP GLY GLN ARG CYS VAL ARG ALA ARG LEU SER LEU THR SEQRES 3 A 127 GLU GLY LEU SER TRP GLY PRO PHE TYR GLY SER ILE GLN SEQRES 4 A 127 THR ARG ALA LEU SER PRO GLU ARG GLU GLU PRO GLY PRO SEQRES 5 A 127 ALA VAL THR LEU MET VAL ASP GLU SER CYS TRP LEU ARG SEQRES 6 A 127 MET LEU PRO GLN VAL LEU THR GLU GLU ALA ALA ASN SER SEQRES 7 A 127 GLU ILE TYR ARG LYS ASP ASP ALA LEU TRP CYS ARG VAL SEQRES 8 A 127 THR LYS VAL VAL PRO SER GLY GLY LEU LEU TYR VAL ARG SEQRES 9 A 127 LEU VAL THR GLU PRO HIS GLY ALA PRO ARG HIS PRO VAL SEQRES 10 A 127 GLN GLU PRO VAL GLU PRO GLY GLY LEU ALA HELIX 1 1 CYS A 161 MET A 165 5 5 SHEET 1 A 2 LEU A 107 GLN A 112 0 SHEET 2 A 2 GLN A 115 ALA A 120 -1 O CYS A 117 N ALA A 110 SHEET 1 B 2 SER A 136 ILE A 137 0 SHEET 2 B 2 LEU A 155 MET A 156 -1 O MET A 156 N SER A 136 SHEET 1 C 4 GLN A 168 VAL A 169 0 SHEET 2 C 4 TYR A 201 LEU A 204 1 O VAL A 202 N VAL A 169 SHEET 3 C 4 ALA A 175 LYS A 182 1 N ILE A 179 O ARG A 203 SHEET 4 C 4 ALA A 185 VAL A 190 -1 O TRP A 187 N TYR A 180 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1