data_2MQ4 # _entry.id 2MQ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MQ4 pdb_00002mq4 10.2210/pdb2mq4/pdb RCSB RCSB103916 ? ? BMRB 25011 ? ? WWPDB D_1000103916 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25011 BMRB unspecified . 2MQ2 PDB unspecified . 2MQ5 PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MQ4 _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-06-12 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mohanram, H.' 1 'Bhattacharjya, S.' 2 # _citation.id primary _citation.title 'Cysteine deleted protegrin-1 (CDP-1): anti-bacterial activity, outer-membrane disruption and selectivity.' _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1840 _citation.page_first 3006 _citation.page_last 3016 _citation.year 2014 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24997421 _citation.pdbx_database_id_DOI 10.1016/j.bbagen.2014.06.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mohanram, H.' 1 ? primary 'Bhattacharjya, S.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RR11 peptide from Cysteine Deleted Protegrin-1' _entity.formula_weight 1482.803 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RLYRRRFVVGR _entity_poly.pdbx_seq_one_letter_code_can RLYRRRFVVGR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 LEU n 1 3 TYR n 1 4 ARG n 1 5 ARG n 1 6 ARG n 1 7 PHE n 1 8 VAL n 1 9 VAL n 1 10 GLY n 1 11 ARG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MQ4 _struct_ref.pdbx_db_accession 2MQ4 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MQ4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2MQ4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 55.1 _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '55.1M protein-1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2MQ4 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MQ4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MQ4 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version Goddard 'chemical shift assignment' Sparky 1 ? 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MQ4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MQ4 _struct.title 'Cysteine Deleted Protegrin-1 (CDP-1): Anti-bacterial Activity, Outer-Membrane Disruption and Selectivity' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MQ4 _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'beta hairpin, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _atom_sites.entry_id 2MQ4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ARG 11 11 11 ARG ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2022-08-24 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_database_2.pdbx_DOI' 6 2 'Structure model' '_database_2.pdbx_database_accession' 7 2 'Structure model' '_pdbx_nmr_software.name' 8 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.component protein-1 _pdbx_nmr_exptl_sample.concentration 55.1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units M _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 2 ? ? -105.94 52.27 2 1 ARG A 4 ? ? -73.91 38.34 3 1 PHE A 7 ? ? -135.42 -79.04 4 1 VAL A 9 ? ? -43.82 -4.43 5 2 LEU A 2 ? ? -107.00 50.63 6 2 ARG A 4 ? ? -73.66 37.80 7 2 PHE A 7 ? ? -135.55 -78.89 8 2 VAL A 9 ? ? -43.93 -4.35 9 3 LEU A 2 ? ? -105.88 52.38 10 3 ARG A 4 ? ? -73.90 38.32 11 3 PHE A 7 ? ? -135.44 -79.08 12 3 VAL A 9 ? ? -43.84 -4.42 13 4 LEU A 2 ? ? -106.98 50.60 14 4 ARG A 4 ? ? -73.69 37.78 15 4 PHE A 7 ? ? -135.54 -78.91 16 4 VAL A 9 ? ? -43.93 -4.36 17 5 LEU A 2 ? ? -106.11 52.21 18 5 ARG A 4 ? ? -73.95 38.38 19 5 PHE A 7 ? ? -135.44 -78.98 20 5 VAL A 9 ? ? -43.89 -4.38 21 6 LEU A 2 ? ? -106.97 50.61 22 6 ARG A 4 ? ? -73.75 37.74 23 6 PHE A 7 ? ? -135.55 -78.93 24 6 VAL A 9 ? ? -43.99 -4.31 25 7 LEU A 2 ? ? -106.98 50.66 26 7 ARG A 4 ? ? -73.75 37.84 27 7 PHE A 7 ? ? -135.54 -78.86 28 7 VAL A 9 ? ? -43.94 -4.37 29 8 LEU A 2 ? ? -107.13 50.45 30 8 ARG A 4 ? ? -73.94 38.37 31 8 PHE A 7 ? ? -135.78 -78.69 32 8 VAL A 9 ? ? -43.90 -4.33 33 9 LEU A 2 ? ? -106.89 50.81 34 9 ARG A 4 ? ? -73.78 37.79 35 9 PHE A 7 ? ? -135.46 -78.81 36 9 VAL A 9 ? ? -43.80 -4.58 37 10 LEU A 2 ? ? -107.24 51.13 38 10 ARG A 4 ? ? -75.31 43.20 39 10 PHE A 7 ? ? -134.23 -80.83 40 10 VAL A 9 ? ? -43.50 -5.62 41 11 LEU A 2 ? ? -107.34 50.96 42 11 ARG A 4 ? ? -75.21 43.13 43 11 PHE A 7 ? ? -134.22 -80.70 44 11 VAL A 9 ? ? -43.54 -5.56 45 12 LEU A 2 ? ? -107.34 50.90 46 12 ARG A 4 ? ? -75.25 43.11 47 12 PHE A 7 ? ? -134.33 -80.70 48 12 VAL A 9 ? ? -43.57 -5.53 49 13 LEU A 2 ? ? -107.33 50.93 50 13 ARG A 4 ? ? -75.32 43.18 51 13 PHE A 7 ? ? -134.39 -80.76 52 13 VAL A 9 ? ? -43.55 -5.60 53 14 LEU A 2 ? ? -105.79 52.23 54 14 ARG A 4 ? ? -74.74 40.67 55 14 PHE A 7 ? ? -135.30 -79.37 56 14 VAL A 9 ? ? -44.22 -4.23 57 15 LEU A 2 ? ? -107.45 50.88 58 15 ARG A 4 ? ? -75.35 43.17 59 15 PHE A 7 ? ? -134.29 -80.70 60 15 VAL A 9 ? ? -43.64 -5.50 61 16 LEU A 2 ? ? -107.17 51.03 62 16 ARG A 4 ? ? -75.27 43.09 63 16 PHE A 7 ? ? -134.41 -80.74 64 16 VAL A 9 ? ? -43.56 -5.58 65 17 LEU A 2 ? ? -107.44 50.99 66 17 ARG A 4 ? ? -75.31 43.11 67 17 PHE A 7 ? ? -134.33 -80.63 68 17 VAL A 9 ? ? -43.57 -5.50 69 18 LEU A 2 ? ? -107.14 51.06 70 18 ARG A 4 ? ? -75.41 43.88 71 18 PHE A 7 ? ? -134.56 -80.62 72 18 VAL A 9 ? ? -43.28 -5.92 73 19 LEU A 2 ? ? -107.37 50.84 74 19 ARG A 4 ? ? -75.37 43.17 75 19 PHE A 7 ? ? -134.40 -80.71 76 19 VAL A 9 ? ? -43.61 -5.51 77 20 LEU A 2 ? ? -105.91 52.43 78 20 ARG A 4 ? ? -73.81 37.40 79 20 PHE A 7 ? ? -135.37 -78.90 80 20 VAL A 9 ? ? -43.70 -4.67 #