HEADER RNA BINDING PROTEIN 24-JUN-14 2MQL TITLE STRUCTURAL INVESTIGATION OF HNRNP L COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HNRNPL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 86-190; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HNRNPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTYB11 KEYWDS PROTEIN, RRM, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BLATTER,F.ALLAIN REVDAT 5 14-JUN-23 2MQL 1 REMARK REVDAT 4 15-NOV-17 2MQL 1 REMARK REVDAT 3 04-NOV-15 2MQL 1 JRNL REVDAT 2 24-JUN-15 2MQL 1 JRNL REVDAT 1 06-MAY-15 2MQL 0 JRNL AUTH M.BLATTER,S.DUNIN-HORKAWICZ,I.GRISHINA,C.MARIS,S.THORE, JRNL AUTH 2 T.MAIER,A.BINDEREIF,J.M.BUJNICKI,F.H.ALLAIN JRNL TITL THE SIGNATURE OF THE FIVE-STRANDED VRRM FOLD DEFINED BY JRNL TITL 2 FUNCTIONAL, STRUCTURAL AND COMPUTATIONAL ANALYSIS OF THE JRNL TITL 3 HNRNP L PROTEIN. JRNL REF J.MOL.BIOL. V. 427 3001 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 26051023 JRNL DOI 10.1016/J.JMB.2015.05.020 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103933. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-100% 15N] PROTEIN, 60 REMARK 210 MM SODIUM CHLORIDE, 40 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 1-2 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 60 MM SODIUM REMARK 210 CHLORIDE, 40 MM SODIUM PHOSPHATE, REMARK 210 1 MM DTT, 90% H2O/10% D2O; 1-2 REMARK 210 MM [U-100% 15N] PROTEIN, 60 MM REMARK 210 SODIUM CHLORIDE, 40 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CYANA, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 91 2.26 -158.65 REMARK 500 1 ASP A 106 -35.08 -173.39 REMARK 500 1 ASP A 154 -5.94 -140.18 REMARK 500 1 ILE A 159 -38.79 -137.43 REMARK 500 1 SER A 183 -22.64 -156.41 REMARK 500 2 HIS A 91 27.17 -155.52 REMARK 500 2 ASP A 106 -37.19 -172.08 REMARK 500 2 ASP A 154 -4.84 -141.39 REMARK 500 2 ILE A 159 -41.57 -136.56 REMARK 500 3 HIS A 91 0.18 -160.71 REMARK 500 3 ASP A 106 -35.46 -172.93 REMARK 500 3 ILE A 159 -38.46 -136.50 REMARK 500 4 ASP A 88 -179.66 54.98 REMARK 500 4 HIS A 91 15.48 48.83 REMARK 500 4 PRO A 97 0.06 -69.51 REMARK 500 4 ASP A 106 -35.58 -173.94 REMARK 500 4 ASP A 154 -1.86 -141.07 REMARK 500 4 ILE A 159 -42.51 -138.00 REMARK 500 4 GLN A 172 -9.78 -145.55 REMARK 500 5 ASN A 86 -5.58 -146.83 REMARK 500 5 HIS A 91 9.15 -157.12 REMARK 500 5 ASP A 106 -34.78 -173.12 REMARK 500 5 ASP A 154 -6.50 -142.07 REMARK 500 5 ILE A 159 -39.67 -137.38 REMARK 500 5 GLN A 172 -10.72 48.86 REMARK 500 5 ARG A 176 36.49 -154.89 REMARK 500 6 TYR A 87 -163.92 53.82 REMARK 500 6 ASP A 89 43.34 -144.09 REMARK 500 6 HIS A 91 11.00 -147.52 REMARK 500 6 ASP A 106 -35.92 -171.62 REMARK 500 6 ASP A 154 -7.88 -141.19 REMARK 500 6 ILE A 159 -43.79 -137.53 REMARK 500 6 GLN A 172 -1.51 47.72 REMARK 500 7 ASN A 86 36.47 -90.48 REMARK 500 7 ASP A 106 -36.93 -172.92 REMARK 500 7 ILE A 159 -43.36 -136.99 REMARK 500 8 TYR A 87 -160.90 51.09 REMARK 500 8 HIS A 91 10.62 -161.01 REMARK 500 8 PRO A 97 1.36 -69.53 REMARK 500 8 ASP A 106 -37.44 -172.78 REMARK 500 8 ASP A 154 -4.17 -141.66 REMARK 500 8 ILE A 159 -39.10 -136.97 REMARK 500 8 ASN A 187 15.00 -144.03 REMARK 500 9 HIS A 91 10.96 -147.90 REMARK 500 9 ASP A 106 -34.50 -172.40 REMARK 500 9 ASP A 154 -3.59 -143.52 REMARK 500 9 ILE A 159 -38.75 -136.01 REMARK 500 9 THR A 170 26.04 44.06 REMARK 500 9 GLN A 172 -6.83 -150.36 REMARK 500 10 HIS A 91 18.81 -146.74 REMARK 500 REMARK 500 THIS ENTRY HAS 116 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MQM RELATED DB: PDB REMARK 900 RELATED ID: 2MQN RELATED DB: PDB REMARK 900 RELATED ID: 2MQO RELATED DB: PDB REMARK 900 RELATED ID: 2MQP RELATED DB: PDB REMARK 900 RELATED ID: 2MQQ RELATED DB: PDB REMARK 900 RELATED ID: 25038 RELATED DB: BMRB DBREF 2MQL A 84 188 UNP F2Z3R2 F2Z3R2_RAT 86 190 SEQRES 1 A 105 GLY GLU ASN TYR ASP ASP PRO HIS LYS THR PRO ALA SER SEQRES 2 A 105 PRO VAL VAL HIS ILE ARG GLY LEU ILE ASP GLY VAL VAL SEQRES 3 A 105 GLU ALA ASP LEU VAL GLU ALA LEU GLN GLU PHE GLY PRO SEQRES 4 A 105 ILE SER TYR VAL VAL VAL MET PRO LYS LYS ARG GLN ALA SEQRES 5 A 105 LEU VAL GLU PHE GLU ASP VAL LEU GLY ALA CYS ASN ALA SEQRES 6 A 105 VAL ASN TYR ALA ALA ASP ASN GLN ILE TYR ILE ALA GLY SEQRES 7 A 105 HIS PRO ALA PHE VAL ASN TYR SER THR SER GLN LYS ILE SEQRES 8 A 105 SER ARG PRO GLY ASP SER ASP ASP SER ARG SER VAL ASN SEQRES 9 A 105 SER HELIX 1 1 VAL A 109 GLN A 118 1 10 HELIX 2 2 ASP A 141 ASN A 147 1 7 HELIX 3 3 ALA A 148 ALA A 153 1 6 SHEET 1 A 5 ILE A 123 MET A 129 0 SHEET 2 A 5 GLN A 134 PHE A 139 -1 O GLU A 138 N SER A 124 SHEET 3 A 5 VAL A 98 ARG A 102 -1 N ILE A 101 O ALA A 135 SHEET 4 A 5 PRO A 163 TYR A 168 -1 O ASN A 167 N HIS A 100 SHEET 5 A 5 ILE A 157 TYR A 158 -1 N ILE A 157 O ALA A 164 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1