HEADER RNA BINDING PROTEIN 24-JUN-14 2MQM TITLE STRUCTURAL INVESTIGATION OF HNRNP L COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HNRNPL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 174-291; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HNRNPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTYB11 KEYWDS PROTEIN, RRM, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BLATTER,F.ALLAIN REVDAT 5 14-JUN-23 2MQM 1 REMARK REVDAT 4 15-NOV-17 2MQM 1 REMARK REVDAT 3 04-NOV-15 2MQM 1 JRNL REVDAT 2 24-JUN-15 2MQM 1 JRNL REVDAT 1 06-MAY-15 2MQM 0 JRNL AUTH M.BLATTER,S.DUNIN-HORKAWICZ,I.GRISHINA,C.MARIS,S.THORE, JRNL AUTH 2 T.MAIER,A.BINDEREIF,J.M.BUJNICKI,F.H.ALLAIN JRNL TITL THE SIGNATURE OF THE FIVE-STRANDED VRRM FOLD DEFINED BY JRNL TITL 2 FUNCTIONAL, STRUCTURAL AND COMPUTATIONAL ANALYSIS OF THE JRNL TITL 3 HNRNP L PROTEIN. JRNL REF J.MOL.BIOL. V. 427 3001 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 26051023 JRNL DOI 10.1016/J.JMB.2015.05.020 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103934. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-100% 15N] ENTITY-1, 60 REMARK 210 MM SODIUM CHLORIDE-2, 40 MM REMARK 210 SODIUM PHOSPHATE-3, 1 MM DTT-4, REMARK 210 90% H2O/10% D2O; 1-2 MM [U-100% REMARK 210 13C; U-100% 15N] ENTITY-5, 60 MM REMARK 210 SODIUM CHLORIDE-6, 40 MM SODIUM REMARK 210 PHOSPHATE-7, 1 MM DTT-8, 90% H2O/ REMARK 210 10% D2O; 1-2 MM [U-100% 15N] REMARK 210 ENTITY-9, 60 MM SODIUM CHLORIDE- REMARK 210 10, 40 MM SODIUM PHOSPHATE-11, 1 REMARK 210 MM DTT-12, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 185 13.74 56.46 REMARK 500 1 ARG A 186 -173.32 54.16 REMARK 500 1 VAL A 188 -54.64 -147.16 REMARK 500 1 ARG A 225 24.95 -147.25 REMARK 500 1 SER A 255 15.23 57.52 REMARK 500 1 CYS A 257 179.38 56.19 REMARK 500 1 SER A 288 178.23 56.82 REMARK 500 2 SER A 177 9.64 59.53 REMARK 500 2 ARG A 178 43.54 -149.77 REMARK 500 2 SER A 182 -166.49 57.35 REMARK 500 2 ASP A 183 163.96 62.62 REMARK 500 2 ASP A 184 -22.35 61.08 REMARK 500 2 SER A 185 23.99 48.38 REMARK 500 2 VAL A 188 -67.54 -140.98 REMARK 500 2 ARG A 225 21.90 -140.86 REMARK 500 2 ASN A 227 18.68 53.98 REMARK 500 2 CYS A 257 178.81 57.27 REMARK 500 3 SER A 177 7.99 59.10 REMARK 500 3 ARG A 178 61.91 -152.91 REMARK 500 3 SER A 182 -174.79 56.63 REMARK 500 3 ASP A 183 137.01 61.91 REMARK 500 3 ASP A 184 16.94 51.13 REMARK 500 3 SER A 185 14.16 53.81 REMARK 500 3 ARG A 186 -156.25 48.60 REMARK 500 3 VAL A 188 -51.04 -152.69 REMARK 500 3 PRO A 199 40.27 -74.31 REMARK 500 3 ARG A 225 18.30 -142.63 REMARK 500 3 SER A 288 18.44 54.47 REMARK 500 4 LYS A 175 -61.46 -148.18 REMARK 500 4 SER A 182 -172.65 57.99 REMARK 500 4 SER A 185 15.14 54.11 REMARK 500 4 VAL A 188 -64.50 -140.31 REMARK 500 4 ARG A 225 23.43 -142.85 REMARK 500 4 SER A 255 19.11 57.41 REMARK 500 4 CYS A 257 -172.99 47.61 REMARK 500 4 LEU A 287 -2.86 55.35 REMARK 500 4 SER A 288 11.83 -152.46 REMARK 500 5 ASP A 183 165.42 61.10 REMARK 500 5 ASP A 184 -3.46 57.74 REMARK 500 5 SER A 185 -0.53 55.35 REMARK 500 5 ARG A 186 -173.47 52.11 REMARK 500 5 VAL A 188 -65.88 -132.01 REMARK 500 5 ARG A 225 16.24 -143.34 REMARK 500 5 SER A 255 15.44 58.14 REMARK 500 5 CYS A 257 -172.58 53.83 REMARK 500 5 GLN A 290 10.04 -141.32 REMARK 500 6 SER A 182 151.31 61.97 REMARK 500 6 ASP A 183 22.88 45.64 REMARK 500 6 ASP A 184 13.05 57.05 REMARK 500 6 ARG A 186 164.63 61.31 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25039 RELATED DB: BMRB REMARK 900 RELATED ID: 2MQL RELATED DB: PDB REMARK 900 RELATED ID: 2MQN RELATED DB: PDB REMARK 900 RELATED ID: 2MQO RELATED DB: PDB REMARK 900 RELATED ID: 2MQP RELATED DB: PDB REMARK 900 RELATED ID: 2MQQ RELATED DB: PDB DBREF 2MQM A 174 291 UNP F2Z3R2 F2Z3R2_RAT 174 291 SEQRES 1 A 118 GLN LYS ILE SER ARG PRO GLY ASP SER ASP ASP SER ARG SEQRES 2 A 118 SER VAL ASN SER VAL LEU LEU PHE THR ILE LEU ASN PRO SEQRES 3 A 118 ILE TYR SER ILE THR THR ASP VAL LEU TYR THR ILE CYS SEQRES 4 A 118 ASN PRO CYS GLY PRO VAL GLN ARG ILE VAL ILE PHE ARG SEQRES 5 A 118 LYS ASN GLY VAL GLN ALA MET VAL GLU PHE ASP SER VAL SEQRES 6 A 118 GLN SER ALA GLN ARG ALA LYS ALA SER LEU ASN GLY ALA SEQRES 7 A 118 ASP ILE TYR SER GLY CYS CYS THR LEU LYS ILE GLU TYR SEQRES 8 A 118 ALA LYS PRO THR ARG LEU ASN VAL PHE LYS ASN ASP GLN SEQRES 9 A 118 ASP THR TRP ASP TYR THR ASN PRO ASN LEU SER GLY GLN SEQRES 10 A 118 GLY HELIX 1 1 ASP A 181 ARG A 186 5 6 HELIX 2 2 THR A 204 ASN A 213 1 10 HELIX 3 3 PRO A 214 GLY A 216 5 3 HELIX 4 4 SER A 237 ASN A 249 1 13 SHEET 1 A 5 LEU A 260 TYR A 264 0 SHEET 2 A 5 VAL A 191 ILE A 196 -1 N LEU A 193 O GLU A 263 SHEET 3 A 5 GLN A 230 PHE A 235 -1 O ALA A 231 N PHE A 194 SHEET 4 A 5 VAL A 218 PHE A 224 -1 N GLN A 219 O GLU A 234 SHEET 5 A 5 THR A 279 ASP A 281 -1 O TRP A 280 N ILE A 221 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1