HEADER RNA BINDING PROTEIN 24-JUN-14 2MQN TITLE STRUCTURAL INVESTIGATION OF HNRNP L COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN L; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-245; COMPND 5 SYNONYM: HNRPL PROTEIN, PROTEIN HNRNPL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HNRNPL, FBLIM1, HNRNP-L, HNRPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28-A KEYWDS PROTEIN, RRM, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BLATTER,F.ALLAIN REVDAT 6 15-MAY-24 2MQN 1 REMARK REVDAT 5 14-JUN-23 2MQN 1 REMARK REVDAT 4 15-NOV-17 2MQN 1 REMARK REVDAT 3 04-NOV-15 2MQN 1 JRNL REVDAT 2 24-JUN-15 2MQN 1 JRNL REVDAT 1 06-MAY-15 2MQN 0 JRNL AUTH M.BLATTER,S.DUNIN-HORKAWICZ,I.GRISHINA,C.MARIS,S.THORE, JRNL AUTH 2 T.MAIER,A.BINDEREIF,J.M.BUJNICKI,F.H.ALLAIN JRNL TITL THE SIGNATURE OF THE FIVE-STRANDED VRRM FOLD DEFINED BY JRNL TITL 2 FUNCTIONAL, STRUCTURAL AND COMPUTATIONAL ANALYSIS OF THE JRNL TITL 3 HNRNP L PROTEIN. JRNL REF J.MOL.BIOL. V. 427 3001 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 26051023 JRNL DOI 10.1016/J.JMB.2015.05.020 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUKER BIOSPIN REMARK 3 (TOPSPIN), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103935. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.25 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-0.7 MM [U-100% 15N] PROTEIN, REMARK 210 200 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 1 MM DTT, 90% REMARK 210 H2O/10% D2O; 0.5-0.7 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 200 MM REMARK 210 SODIUM CHLORIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.5-0.7 MM [U-100% 15N] REMARK 210 PROTEIN, 200 MM SODIUM CHLORIDE, REMARK 210 50 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 414 14.79 53.02 REMARK 500 1 ASN A 438 1.42 57.15 REMARK 500 1 PRO A 496 150.15 -49.93 REMARK 500 1 ASN A 498 10.78 59.92 REMARK 500 1 SER A 536 18.60 55.11 REMARK 500 1 ARG A 538 29.51 48.44 REMARK 500 2 GLU A 407 -63.88 -96.76 REMARK 500 2 SER A 414 14.79 55.42 REMARK 500 2 ASN A 438 1.42 59.80 REMARK 500 2 PHE A 482 19.14 -151.86 REMARK 500 2 SER A 536 15.06 56.22 REMARK 500 3 ASP A 377 17.03 -144.80 REMARK 500 3 SER A 414 17.99 52.95 REMARK 500 3 ASN A 438 1.36 56.83 REMARK 500 3 ARG A 478 31.21 -75.89 REMARK 500 3 PHE A 482 10.49 -149.41 REMARK 500 3 SER A 536 19.37 54.22 REMARK 500 3 TYR A 573 -0.84 -149.03 REMARK 500 3 ALA A 585 76.48 -110.04 REMARK 500 4 TYR A 372 15.20 55.98 REMARK 500 4 PRO A 374 -168.23 -76.19 REMARK 500 4 SER A 414 15.06 53.46 REMARK 500 4 ASN A 438 1.38 58.02 REMARK 500 4 PHE A 474 12.80 -140.05 REMARK 500 4 ASN A 498 3.81 59.28 REMARK 500 4 GLU A 537 -9.92 -57.19 REMARK 500 4 LYS A 565 15.66 -66.69 REMARK 500 4 ALA A 585 76.32 -109.97 REMARK 500 5 GLU A 407 -63.34 -129.91 REMARK 500 5 SER A 414 17.64 53.03 REMARK 500 5 ASN A 438 1.53 56.91 REMARK 500 5 SER A 475 1.72 -69.81 REMARK 500 5 SER A 477 22.29 -72.06 REMARK 500 5 ARG A 478 30.84 -76.07 REMARK 500 5 ASN A 498 -7.71 61.96 REMARK 500 5 SER A 536 15.31 55.68 REMARK 500 5 ARG A 538 29.28 49.42 REMARK 500 6 HIS A 375 91.72 54.14 REMARK 500 6 ASP A 377 14.46 -142.32 REMARK 500 6 GLU A 407 -65.37 -101.02 REMARK 500 6 SER A 414 16.00 52.84 REMARK 500 6 ASN A 438 1.28 57.09 REMARK 500 6 GLU A 537 -7.51 -57.84 REMARK 500 6 TYR A 573 -2.60 -144.88 REMARK 500 7 SER A 414 12.37 52.88 REMARK 500 7 ASN A 438 1.54 56.87 REMARK 500 7 SER A 451 -167.00 -100.51 REMARK 500 7 PHE A 474 11.14 -140.07 REMARK 500 7 ASN A 498 -14.74 64.40 REMARK 500 7 SER A 536 13.60 55.27 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25040 RELATED DB: BMRB REMARK 900 RELATED ID: 2MQL RELATED DB: PDB REMARK 900 RELATED ID: 2MQM RELATED DB: PDB REMARK 900 RELATED ID: 2MQO RELATED DB: PDB REMARK 900 RELATED ID: 2MQP RELATED DB: PDB REMARK 900 RELATED ID: 2MQQ RELATED DB: PDB DBREF 2MQN A 371 586 UNP Q5U1Y5 Q5U1Y5_RAT 30 245 SEQRES 1 A 216 ASP TYR GLY PRO HIS ALA ASP SER PRO VAL LEU MET VAL SEQRES 2 A 216 TYR GLY LEU ASP GLN SER LYS MET ASN CYS ASP ARG VAL SEQRES 3 A 216 PHE ASN VAL PHE CYS LEU TYR GLY ASN VAL GLU LYS VAL SEQRES 4 A 216 LYS PHE MET LYS SER LYS PRO GLY ALA ALA MET VAL GLU SEQRES 5 A 216 MET ALA ASP GLY TYR ALA VAL ASP ARG ALA ILE THR HIS SEQRES 6 A 216 LEU ASN ASN ASN PHE MET PHE GLY GLN LYS MET ASN VAL SEQRES 7 A 216 CYS VAL SER LYS GLN PRO ALA ILE MET PRO GLY GLN SER SEQRES 8 A 216 TYR GLY LEU GLU ASP GLY SER CYS SER TYR LYS ASP PHE SEQRES 9 A 216 SER GLU SER ARG ASN ASN ARG PHE SER THR PRO GLU GLN SEQRES 10 A 216 ALA ALA LYS ASN ARG ILE GLN HIS PRO SER ASN VAL LEU SEQRES 11 A 216 HIS PHE PHE ASN ALA PRO LEU GLU VAL THR GLU GLU ASN SEQRES 12 A 216 PHE PHE GLU ILE CYS ASP GLU LEU GLY VAL LYS ARG PRO SEQRES 13 A 216 THR SER VAL LYS VAL PHE SER GLY LYS SER GLU ARG SER SEQRES 14 A 216 SER SER GLY LEU LEU GLU TRP ASP SER LYS SER ASP ALA SEQRES 15 A 216 LEU GLU THR LEU GLY PHE LEU ASN HIS TYR GLN MET LYS SEQRES 16 A 216 ASN PRO ASN GLY PRO TYR PRO TYR THR LEU LYS LEU CYS SEQRES 17 A 216 PHE SER THR ALA GLN HIS ALA SER HELIX 1 1 ASN A 392 CYS A 401 1 10 HELIX 2 2 LEU A 402 GLY A 404 5 3 HELIX 3 3 ASP A 425 HIS A 435 1 11 HELIX 4 4 THR A 510 GLY A 522 1 13 HELIX 5 5 SER A 548 ASN A 560 1 13 SHEET 1 A 5 ASN A 447 VAL A 450 0 SHEET 2 A 5 VAL A 380 TYR A 384 -1 N TYR A 384 O ASN A 447 SHEET 3 A 5 ALA A 418 MET A 423 -1 O ALA A 419 N VAL A 383 SHEET 4 A 5 VAL A 406 PHE A 411 -1 N GLU A 407 O GLU A 422 SHEET 5 A 5 TYR A 471 ASP A 473 -1 O LYS A 472 N VAL A 409 SHEET 1 B 3 SER A 528 VAL A 529 0 SHEET 2 B 3 SER A 539 GLU A 545 -1 O GLU A 545 N SER A 528 SHEET 3 B 3 PHE A 532 SER A 533 -1 N PHE A 532 O SER A 541 SHEET 1 C 4 SER A 528 VAL A 529 0 SHEET 2 C 4 SER A 539 GLU A 545 -1 O GLU A 545 N SER A 528 SHEET 3 C 4 LEU A 500 PRO A 506 -1 N ALA A 505 O SER A 540 SHEET 4 C 4 LYS A 576 PHE A 579 -1 O CYS A 578 N HIS A 501 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1