HEADER SIGNALING PROTEIN 04-AUG-14 2MSG TITLE SOLID-STATE NMR STRUCTURE OF UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUSE 1-72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS UBIQUITIN FOLD, SIGNALING PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR N.LAKOMEK,B.HABENSTEIN,A.LOQUET,C.SHI,K.GILLER,S.WOLFF,S.BECKER, AUTHOR 2 H.FASSHUBER,A.LANGE REVDAT 4 15-MAY-24 2MSG 1 REMARK REVDAT 3 14-JUN-23 2MSG 1 REMARK REVDAT 2 13-MAY-15 2MSG 1 JRNL REVDAT 1 18-FEB-15 2MSG 0 JRNL AUTH H.K.FASSHUBER,N.A.LAKOMEK,B.HABENSTEIN,A.LOQUET,C.SHI, JRNL AUTH 2 K.GILLER,S.WOLFF,S.BECKER,A.LANGE JRNL TITL STRUCTURAL HETEROGENEITY IN MICROCRYSTALLINE UBIQUITIN JRNL TITL 2 STUDIED BY SOLID-STATE NMR. JRNL REF PROTEIN SCI. V. 24 592 2015 JRNL REFN ISSN 0961-8368 JRNL PMID 25644665 JRNL DOI 10.1002/PRO.2654 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.36, X-PLOR NIH 2.36, X-PLOR NIH 2.36, REMARK 3 X-PLOR NIH 2.36, X-PLOR NIH 2.36, X-PLOR NIH 2.36 REMARK 3 AUTHORS : BRUKER BIOSPIN (X-PLOR NIH), BRUKER BIOSPIN (X REMARK 3 -PLOR NIH), GODDARD (X-PLOR NIH), CORNILESCU, REMARK 3 DELAGLIO AND BAX (X-PLOR NIH), SCHWIETERS, REMARK 3 KUSZEWSKI, TJANDRA AND CLORE (X-PLOR NIH), REMARK 3 BHATTACHARYA AND MONTELIONE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000103996. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MG [U-100% 13C; U-100% 15N] REMARK 210 UBIQUITIN, 30 MG [1-GLUCOSE 13C, REMARK 210 U-100% 15N] UBIQUITIN, 40 MG [2- REMARK 210 GLUCOSE 13C,U-100% 15N] REMARK 210 UBIQUITIN, 40 % V/V MPD, 0.2 M REMARK 210 CDCL2, 1 MG DSS, 100% H20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PDSD; NCA; NCO; INEPT; NCACX; REMARK 210 NCOCX REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.36 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THREE DIFFERENT LABELED SAMPLES REMARK 210 UBIQUITIN-UNIF [13C-15N] UNIFORMLY LABELED REMARK 210 UBIQUITIN-1GLC [13C-15N]-1GLUCOSE LABELED REMARK 210 UBIQUITIN-2GLU [13C-15N]-2GLUCOSE LABELED REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 62 H GLU A 64 1.23 REMARK 500 O SER A 20 H LEU A 56 1.33 REMARK 500 O THR A 22 H VAL A 26 1.42 REMARK 500 H PHE A 45 O LYS A 48 1.46 REMARK 500 O MET A 1 O VAL A 17 2.15 REMARK 500 O GLN A 62 N GLU A 64 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 21 64.01 31.57 REMARK 500 1 ASP A 52 8.31 -54.97 REMARK 500 1 LYS A 63 25.52 -41.15 REMARK 500 1 GLU A 64 53.67 91.01 REMARK 500 2 ASP A 21 67.86 31.54 REMARK 500 2 ASP A 52 6.09 -48.80 REMARK 500 2 LYS A 63 30.24 -42.05 REMARK 500 2 GLU A 64 53.16 91.38 REMARK 500 2 LEU A 71 -47.35 -146.07 REMARK 500 3 ASP A 21 67.19 32.88 REMARK 500 3 ASP A 39 -8.18 -59.50 REMARK 500 3 ASP A 52 5.32 -47.59 REMARK 500 3 LYS A 63 26.19 -41.62 REMARK 500 3 GLU A 64 54.59 90.64 REMARK 500 3 LEU A 71 121.36 77.46 REMARK 500 4 ASP A 21 68.27 33.43 REMARK 500 4 ASP A 52 5.51 -49.00 REMARK 500 4 LYS A 63 26.30 -41.03 REMARK 500 4 GLU A 64 52.45 90.94 REMARK 500 5 ASP A 21 66.86 32.24 REMARK 500 5 GLU A 34 -116.11 -160.46 REMARK 500 5 ASP A 52 7.17 -47.92 REMARK 500 5 LYS A 63 28.05 -43.05 REMARK 500 5 GLU A 64 53.81 92.52 REMARK 500 6 PRO A 19 -8.86 -52.02 REMARK 500 6 ASP A 21 65.64 31.32 REMARK 500 6 GLU A 51 -168.94 -69.13 REMARK 500 6 ASP A 52 5.99 -46.79 REMARK 500 6 LYS A 63 28.66 -41.74 REMARK 500 6 GLU A 64 54.59 91.35 REMARK 500 7 ASP A 21 64.96 32.71 REMARK 500 7 ASP A 52 8.51 -45.65 REMARK 500 7 LYS A 63 28.66 -41.24 REMARK 500 7 GLU A 64 55.04 92.94 REMARK 500 7 LEU A 71 -71.93 -47.07 REMARK 500 8 PRO A 19 -7.96 -49.77 REMARK 500 8 ASP A 21 64.65 30.53 REMARK 500 8 ASP A 52 5.76 -48.51 REMARK 500 8 LYS A 63 30.90 -43.28 REMARK 500 8 GLU A 64 52.49 91.02 REMARK 500 8 LEU A 71 111.81 80.01 REMARK 500 9 ASP A 21 68.76 33.36 REMARK 500 9 ASP A 52 7.61 -47.42 REMARK 500 9 LYS A 63 29.98 -43.27 REMARK 500 9 GLU A 64 51.52 92.37 REMARK 500 10 ASP A 21 69.76 32.92 REMARK 500 10 ASP A 52 7.09 -46.69 REMARK 500 10 LYS A 63 30.63 -43.36 REMARK 500 10 GLU A 64 54.17 91.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 42 0.31 SIDE CHAIN REMARK 500 1 ARG A 54 0.27 SIDE CHAIN REMARK 500 1 ARG A 72 0.14 SIDE CHAIN REMARK 500 2 ARG A 42 0.28 SIDE CHAIN REMARK 500 2 ARG A 54 0.31 SIDE CHAIN REMARK 500 2 ARG A 72 0.12 SIDE CHAIN REMARK 500 3 ARG A 42 0.15 SIDE CHAIN REMARK 500 3 ARG A 54 0.28 SIDE CHAIN REMARK 500 3 ARG A 72 0.29 SIDE CHAIN REMARK 500 4 ARG A 42 0.28 SIDE CHAIN REMARK 500 4 ARG A 54 0.29 SIDE CHAIN REMARK 500 4 ARG A 72 0.25 SIDE CHAIN REMARK 500 5 ARG A 42 0.28 SIDE CHAIN REMARK 500 5 ARG A 54 0.16 SIDE CHAIN REMARK 500 5 ARG A 72 0.30 SIDE CHAIN REMARK 500 6 ARG A 42 0.27 SIDE CHAIN REMARK 500 6 ARG A 54 0.22 SIDE CHAIN REMARK 500 6 ARG A 72 0.13 SIDE CHAIN REMARK 500 7 ARG A 42 0.31 SIDE CHAIN REMARK 500 7 ARG A 72 0.31 SIDE CHAIN REMARK 500 8 ARG A 42 0.28 SIDE CHAIN REMARK 500 8 ARG A 54 0.16 SIDE CHAIN REMARK 500 8 ARG A 72 0.30 SIDE CHAIN REMARK 500 9 ARG A 42 0.16 SIDE CHAIN REMARK 500 9 ARG A 54 0.28 SIDE CHAIN REMARK 500 9 ARG A 72 0.13 SIDE CHAIN REMARK 500 10 ARG A 54 0.28 SIDE CHAIN REMARK 500 10 ARG A 72 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ONS RELATED DB: PDB REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 RELATED ID: 25123 RELATED DB: BMRB DBREF 2MSG A 1 72 UNP P0CG47 UBB_HUMAN 7 78 SEQRES 1 A 72 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 72 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 72 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 72 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 72 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 72 THR LEU HIS LEU VAL LEU ARG HELIX 1 1 THR A 22 GLU A 34 1 13 HELIX 2 2 LEU A 56 ASN A 60 5 5 SHEET 1 A 3 ILE A 13 LEU A 15 0 SHEET 2 A 3 ILE A 3 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 A 3 THR A 66 HIS A 68 1 O LEU A 67 N PHE A 4 SHEET 1 B 2 ILE A 44 PHE A 45 0 SHEET 2 B 2 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1