HEADER TRANSCRIPTION 11-AUG-14 2MSY TITLE SOLUTION STRUCTURE OF HOX HOMEODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-C9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 184-251; COMPND 5 SYNONYM: HOMEOBOX PROTEIN HOX-3B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOXC9, HOX3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A (+) KEYWDS HOMEODOMAIN, TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR H.KIM,S.PARK,J.HAN,B.LEE REVDAT 3 15-MAY-24 2MSY 1 REMARK REVDAT 2 14-JUN-23 2MSY 1 REMARK REVDAT 1 16-SEP-15 2MSY 0 JRNL AUTH H.H.KIM,S.J.PARK,J.H.HAN,C.PATHAK,H.K.CHEONG,B.J.LEE JRNL TITL STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN THE HOX AND JRNL TITL 2 HMGB1 AND UNDERSTANDING OF THE HMGB1-ENHANCING EFFECT OF JRNL TITL 3 HOX-DNA BINDING. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1854 449 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 25707357 JRNL DOI 10.1016/J.BBAPAP.2015.02.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104008. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 MES-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D HNCO; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N TOCSY; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -36.71 -139.71 REMARK 500 1 TRP A 3 -22.66 -169.43 REMARK 500 1 ARG A 7 -62.35 -159.57 REMARK 500 1 LYS A 11 -77.42 -107.56 REMARK 500 1 LYS A 12 78.81 54.30 REMARK 500 1 ARG A 13 -75.82 -64.52 REMARK 500 1 CYS A 14 54.30 -149.07 REMARK 500 1 PRO A 15 23.47 -79.89 REMARK 500 1 MET A 67 -171.01 57.95 REMARK 500 2 ASN A 2 17.41 59.23 REMARK 500 2 ARG A 7 100.51 58.39 REMARK 500 2 ARG A 10 179.00 60.89 REMARK 500 2 PRO A 15 32.27 -91.77 REMARK 500 2 MET A 67 -63.92 -97.59 REMARK 500 3 ASN A 2 -75.34 -79.59 REMARK 500 3 TRP A 3 -32.34 -163.82 REMARK 500 3 ALA A 6 15.53 59.34 REMARK 500 3 ASN A 31 17.14 45.14 REMARK 500 3 TYR A 33 147.11 -179.59 REMARK 500 4 ALA A 6 -178.21 60.63 REMARK 500 4 ARG A 10 15.60 -146.89 REMARK 500 4 LYS A 11 -72.60 -125.28 REMARK 500 4 CYS A 14 62.17 -161.33 REMARK 500 4 ASN A 31 25.56 48.08 REMARK 500 4 TYR A 33 86.66 72.24 REMARK 500 4 LEU A 34 -179.96 -67.96 REMARK 500 5 TRP A 3 -86.05 -106.27 REMARK 500 5 HIS A 5 13.71 -176.57 REMARK 500 5 ARG A 7 -69.46 -120.50 REMARK 500 5 ARG A 10 117.93 -160.85 REMARK 500 5 ARG A 13 -64.31 -158.42 REMARK 500 5 CYS A 14 57.26 -144.44 REMARK 500 5 PRO A 15 30.72 -92.83 REMARK 500 5 ASN A 31 43.07 36.39 REMARK 500 6 ASN A 2 -51.88 -167.55 REMARK 500 6 TRP A 3 -19.15 -165.56 REMARK 500 6 ARG A 7 -67.58 -135.77 REMARK 500 6 THR A 9 96.09 58.38 REMARK 500 6 ARG A 10 17.14 -164.14 REMARK 500 6 CYS A 14 70.05 -154.71 REMARK 500 6 ASN A 31 22.91 39.20 REMARK 500 7 ALA A 6 112.30 63.62 REMARK 500 7 THR A 9 -173.19 52.38 REMARK 500 7 LYS A 12 171.33 61.57 REMARK 500 7 CYS A 14 68.57 -151.08 REMARK 500 7 PRO A 15 33.04 -91.31 REMARK 500 8 ASN A 2 -50.78 -159.39 REMARK 500 8 TRP A 3 -32.71 -156.86 REMARK 500 8 ALA A 6 -171.51 59.23 REMARK 500 8 ARG A 7 96.76 59.62 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25142 RELATED DB: BMRB DBREF 2MSY A 1 68 UNP P31274 HXC9_HUMAN 184 251 SEQRES 1 A 68 ALA ASN TRP ILE HIS ALA ARG SER THR ARG LYS LYS ARG SEQRES 2 A 68 CYS PRO TYR THR LYS TYR GLN THR LEU GLU LEU GLU LYS SEQRES 3 A 68 GLU PHE LEU PHE ASN MET TYR LEU THR ARG ASP ARG ARG SEQRES 4 A 68 TYR GLU VAL ALA ARG VAL LEU ASN LEU THR GLU ARG GLN SEQRES 5 A 68 VAL LYS ILE TRP PHE GLN ASN ARG ARG MET LYS MET LYS SEQRES 6 A 68 LYS MET ASN HELIX 1 1 THR A 17 PHE A 30 1 14 HELIX 2 2 THR A 35 LEU A 46 1 12 HELIX 3 3 THR A 49 LYS A 66 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1