HEADER ELECTRON TRANSPORT 15-AUG-14 2MT9 TITLE SOLUTION STRUCTURE OF HOLO_FLDB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN-2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FLDB, B2895, JW2863; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-21 KEYWDS ALPHA/BETA/ALPHA SANDWICH FOLD, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR C.JIN,W.FU,Q.YE REVDAT 4 15-MAY-24 2MT9 1 REMARK REVDAT 3 14-JUN-23 2MT9 1 REMARK REVDAT 2 16-MAR-16 2MT9 1 ATOM REVDAT 1 09-MAR-16 2MT9 0 JRNL AUTH Q.YE,W.FU,Y.HU,C.JIN JRNL TITL LONG-CHAIN FLAVODOXIN FLDB FROM ESCHERICHIA COLI JRNL REF J.BIOMOL.NMR V. 60 283 2014 JRNL REFN ISSN 0925-2738 JRNL PMID 25380767 JRNL DOI 10.1007/S10858-014-9874-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104018. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] PROTEIN-1, 30 MM REMARK 210 SODIUM PHOSPHATE-2, 2 MM FLAVIN REMARK 210 MONONUCLEOTIDE-3, 90% H2O/10% REMARK 210 D2O; 1 MM [U-13C; U-15N] PROTEIN- REMARK 210 4, 30 MM SODIUM PHOSPHATE-5, 2 REMARK 210 MM FLAVIN MONONUCLEOTIDE-6, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 146 HG SER A 153 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TRP A 96 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 3 TRP A 96 CB - CG - CD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 6 TRP A 96 CB - CG - CD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 6 TRP A 96 CB - CG - CD1 ANGL. DEV. = -8.9 DEGREES REMARK 500 13 TYR A 172 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 11 -90.80 -108.74 REMARK 500 1 CYS A 12 -11.79 -162.03 REMARK 500 1 ASP A 37 -35.28 -131.73 REMARK 500 1 ASP A 57 59.68 26.89 REMARK 500 1 PHE A 58 76.27 55.11 REMARK 500 1 TYR A 93 -88.64 -126.44 REMARK 500 1 PHE A 126 -59.45 -163.53 REMARK 500 1 THR A 127 7.73 54.97 REMARK 500 1 PRO A 131 39.98 -91.61 REMARK 500 1 ALA A 134 -117.38 58.42 REMARK 500 1 ASN A 148 -30.35 -147.42 REMARK 500 2 THR A 11 -77.43 -104.29 REMARK 500 2 CYS A 12 -7.78 175.66 REMARK 500 2 ASP A 37 -33.30 -133.36 REMARK 500 2 ASP A 57 69.77 18.36 REMARK 500 2 LEU A 98 28.98 47.36 REMARK 500 2 PHE A 126 -51.27 -164.52 REMARK 500 2 THR A 127 8.48 58.50 REMARK 500 2 PRO A 131 37.35 -85.31 REMARK 500 2 ALA A 134 -117.31 58.52 REMARK 500 3 ASP A 37 -33.82 -132.42 REMARK 500 3 ASP A 57 69.97 15.37 REMARK 500 3 LEU A 98 27.92 48.91 REMARK 500 3 PHE A 126 -48.58 -168.54 REMARK 500 3 THR A 127 7.53 59.74 REMARK 500 3 PRO A 131 40.07 -85.96 REMARK 500 3 ALA A 134 -110.58 57.94 REMARK 500 4 THR A 11 -85.69 -93.99 REMARK 500 4 CYS A 12 -3.90 -174.18 REMARK 500 4 ASP A 57 58.68 28.21 REMARK 500 4 PHE A 58 73.64 56.58 REMARK 500 4 PHE A 126 -58.88 -163.94 REMARK 500 4 THR A 127 10.15 58.83 REMARK 500 4 PRO A 131 37.65 -85.70 REMARK 500 4 ALA A 134 -116.53 58.73 REMARK 500 5 THR A 11 -85.86 -96.56 REMARK 500 5 CYS A 12 -4.68 -173.91 REMARK 500 5 ASP A 37 -33.84 -132.93 REMARK 500 5 ASP A 57 54.89 30.65 REMARK 500 5 PHE A 58 75.78 56.74 REMARK 500 5 LEU A 98 29.01 49.47 REMARK 500 5 PHE A 126 -46.30 -167.22 REMARK 500 5 THR A 127 8.60 59.77 REMARK 500 5 PRO A 131 40.52 -88.26 REMARK 500 5 ALA A 134 -116.54 58.95 REMARK 500 5 THR A 147 -39.04 -133.09 REMARK 500 6 THR A 11 -82.26 -96.70 REMARK 500 6 CYS A 12 -6.41 -177.71 REMARK 500 6 ASP A 37 -33.44 -132.36 REMARK 500 6 ASP A 57 57.62 26.25 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 156 0.08 SIDE CHAIN REMARK 500 6 TYR A 93 0.07 SIDE CHAIN REMARK 500 11 ARG A 22 0.11 SIDE CHAIN REMARK 500 12 TYR A 93 0.07 SIDE CHAIN REMARK 500 13 HIS A 171 0.11 SIDE CHAIN REMARK 500 13 TYR A 172 0.08 SIDE CHAIN REMARK 500 18 ARG A 156 0.07 SIDE CHAIN REMARK 500 19 TYR A 93 0.08 SIDE CHAIN REMARK 500 20 TYR A 93 0.18 SIDE CHAIN REMARK 500 20 ARG A 156 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25153 RELATED DB: BMRB DBREF 2MT9 A 1 173 UNP P0ABY4 FLAW_ECOLI 1 173 SEQRES 1 A 173 MET ASN MET GLY LEU PHE TYR GLY SER SER THR CYS TYR SEQRES 2 A 173 THR GLU MET ALA ALA GLU LYS ILE ARG ASP ILE ILE GLY SEQRES 3 A 173 PRO GLU LEU VAL THR LEU HIS ASN LEU LYS ASP ASP SER SEQRES 4 A 173 PRO LYS LEU MET GLU GLN TYR ASP VAL LEU ILE LEU GLY SEQRES 5 A 173 ILE PRO THR TRP ASP PHE GLY GLU ILE GLN GLU ASP TRP SEQRES 6 A 173 GLU ALA VAL TRP ASP GLN LEU ASP ASP LEU ASN LEU GLU SEQRES 7 A 173 GLY LYS ILE VAL ALA LEU TYR GLY LEU GLY ASP GLN LEU SEQRES 8 A 173 GLY TYR GLY GLU TRP PHE LEU ASP ALA LEU GLY MET LEU SEQRES 9 A 173 HIS ASP LYS LEU SER THR LYS GLY VAL LYS PHE VAL GLY SEQRES 10 A 173 TYR TRP PRO THR GLU GLY TYR GLU PHE THR SER PRO LYS SEQRES 11 A 173 PRO VAL ILE ALA ASP GLY GLN LEU PHE VAL GLY LEU ALA SEQRES 12 A 173 LEU ASP GLU THR ASN GLN TYR ASP LEU SER ASP GLU ARG SEQRES 13 A 173 ILE GLN SER TRP CYS GLU GLN ILE LEU ASN GLU MET ALA SEQRES 14 A 173 GLU HIS TYR ALA HET FMN A 201 50 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P HELIX 1 1 CYS A 12 GLY A 26 1 15 HELIX 2 2 SER A 39 GLN A 45 5 7 HELIX 3 3 GLN A 62 TRP A 69 1 8 HELIX 4 4 ASP A 70 LEU A 75 1 6 HELIX 5 5 LEU A 98 LYS A 111 1 14 HELIX 6 6 ASN A 148 ASP A 151 5 4 HELIX 7 7 LEU A 152 TYR A 172 1 21 SHEET 1 A 5 VAL A 30 ASN A 34 0 SHEET 2 A 5 MET A 3 TYR A 7 1 N LEU A 5 O THR A 31 SHEET 3 A 5 VAL A 48 TRP A 56 1 O ILE A 50 N PHE A 6 SHEET 4 A 5 ILE A 81 GLY A 88 1 O ILE A 81 N LEU A 49 SHEET 5 A 5 LYS A 114 VAL A 116 1 O LYS A 114 N VAL A 82 SHEET 1 B 4 GLU A 60 ILE A 61 0 SHEET 2 B 4 VAL A 48 TRP A 56 -1 N TRP A 56 O GLU A 60 SHEET 3 B 4 ILE A 81 GLY A 88 1 O ILE A 81 N LEU A 49 SHEET 4 B 4 LEU A 142 ASP A 145 1 O LEU A 142 N GLY A 86 SHEET 1 C 3 TRP A 119 PRO A 120 0 SHEET 2 C 3 LEU A 138 PHE A 139 -1 O PHE A 139 N TRP A 119 SHEET 3 C 3 VAL A 132 ILE A 133 -1 N ILE A 133 O LEU A 138 SITE 1 AC1 18 SER A 9 SER A 10 THR A 11 TYR A 13 SITE 2 AC1 18 THR A 14 PRO A 54 THR A 55 TRP A 56 SITE 3 AC1 18 ASP A 57 PHE A 58 GLY A 59 GLN A 62 SITE 4 AC1 18 LEU A 87 GLY A 88 ASP A 89 TYR A 93 SITE 5 AC1 18 TRP A 96 PHE A 97 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1