HEADER RNA BINDING PROTEIN 18-AUG-14 2MTF TITLE SOLUTION STRUCTURE OF THE LA MOTIF OF HUMAN LARP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LA-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACHERON, ACHN, LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-DUET1 KEYWDS LARP6, LA MOTIF, LA-RELATED PROTEINS, ACHERON, LARP, RNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.MARTINO,N.JH.SALISBURY,A.R.ATKINSON,G.KELLY,M.R.CONTE REVDAT 3 14-JUN-23 2MTF 1 REMARK SEQADV REVDAT 2 28-JAN-15 2MTF 1 JRNL REVDAT 1 24-DEC-14 2MTF 0 JRNL AUTH L.MARTINO,S.PENNELL,G.KELLY,B.BUSI,P.BROWN,R.A.ATKINSON, JRNL AUTH 2 N.J.SALISBURY,Z.H.OOI,K.W.SEE,S.J.SMERDON,C.ALFANO,T.T.BUI, JRNL AUTH 3 M.R.CONTE JRNL TITL SYNERGIC INTERPLAY OF THE LA MOTIF, RRM1 AND THE INTERDOMAIN JRNL TITL 2 LINKER OF LARP6 IN THE RECOGNITION OF COLLAGEN MRNA EXPANDS JRNL TITL 3 THE RNA BINDING REPERTOIRE OF THE LA MODULE. JRNL REF NUCLEIC ACIDS RES. V. 43 645 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25488812 JRNL DOI 10.1093/NAR/GKU1287 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.MARTINO,S.PENNELL,G.KELLY,B.BUSI,P.BROWN,A.R.ATKINSON, REMARK 1 AUTH 2 N.JH.SALISBURY,Z.H.OOI,K.W.SEE,S.J.SMERDON,C.ALFANO, REMARK 1 AUTH 3 T.TT.BUI,M.R.CONTE REMARK 1 TITL 1H, 15N AND 13C CHEMICAL SHIFT ASSIGNMENTS OF THE LA MOTIF REMARK 1 TITL 2 AND RRM1 FROM HUMAN LARP6 REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104023. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.25 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.5 MM [U-95% 13C; U-95% REMARK 210 15N] LARP6-LAM, 50 MM TRIS, 100 REMARK 210 MM POTASSIUM CHLORIDE, 1 MM DTT, REMARK 210 50 MM L-ARGININE, 50 MM L- REMARK 210 GLUTAMIC ACID, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TALOS, ARIA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 152 H SER A 155 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 71 77.18 -106.32 REMARK 500 1 SER A 72 155.33 61.29 REMARK 500 1 ASN A 76 -40.34 -176.41 REMARK 500 1 GLU A 77 99.81 -59.74 REMARK 500 1 GLU A 79 26.47 -168.26 REMARK 500 1 ASP A 80 -50.51 -177.96 REMARK 500 1 GLU A 82 -50.41 -159.30 REMARK 500 1 PRO A 88 -163.30 -72.59 REMARK 500 1 ASN A 122 -70.36 -110.96 REMARK 500 1 LYS A 123 -42.85 -176.67 REMARK 500 1 LYS A 136 -30.77 -37.26 REMARK 500 1 LEU A 141 -71.71 -80.32 REMARK 500 1 THR A 171 69.07 -158.09 REMARK 500 2 GLU A 75 -58.23 -157.26 REMARK 500 2 GLU A 77 80.17 -154.11 REMARK 500 2 ARG A 78 38.98 -155.92 REMARK 500 2 GLU A 79 -45.02 -159.73 REMARK 500 2 GLU A 82 -61.28 -150.23 REMARK 500 2 GLU A 84 -176.41 -67.95 REMARK 500 2 PRO A 88 -164.70 -73.31 REMARK 500 2 ASP A 112 76.20 -109.40 REMARK 500 2 ARG A 120 132.61 63.94 REMARK 500 2 ARG A 121 -76.80 66.04 REMARK 500 2 LYS A 136 -31.21 -37.23 REMARK 500 2 LEU A 141 -78.94 -76.96 REMARK 500 2 HIS A 164 29.80 44.99 REMARK 500 2 THR A 171 74.88 -158.09 REMARK 500 2 ASN A 180 45.63 -95.84 REMARK 500 3 ALA A 71 -46.40 -132.83 REMARK 500 3 GLU A 75 153.16 61.60 REMARK 500 3 GLU A 79 -40.19 -175.53 REMARK 500 3 GLU A 82 -77.04 -60.07 REMARK 500 3 GLN A 83 91.09 58.33 REMARK 500 3 ASN A 122 159.86 59.81 REMARK 500 3 LEU A 124 -72.77 -95.99 REMARK 500 3 LYS A 136 -30.49 -37.37 REMARK 500 3 LEU A 141 -72.55 -66.82 REMARK 500 3 THR A 142 -174.42 -170.84 REMARK 500 3 ASP A 144 60.12 -68.80 REMARK 500 4 ARG A 78 -78.49 -90.78 REMARK 500 4 GLU A 79 26.51 -165.67 REMARK 500 4 ASP A 80 -44.36 -168.94 REMARK 500 4 GLN A 83 157.54 60.63 REMARK 500 4 PHE A 104 1.72 -69.83 REMARK 500 4 ASP A 112 39.90 -151.95 REMARK 500 4 ASN A 122 79.05 60.22 REMARK 500 4 LEU A 124 -72.83 -60.25 REMARK 500 4 ASP A 144 49.75 -79.39 REMARK 500 4 HIS A 164 33.87 39.86 REMARK 500 4 VAL A 167 88.38 -153.23 REMARK 500 REMARK 500 THIS ENTRY HAS 253 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25159 RELATED DB: BMRB DBREF 2MTF A 70 183 UNP Q9BRS8 LARP6_HUMAN 70 183 SEQADV 2MTF GLY A 69 UNP Q9BRS8 EXPRESSION TAG SEQRES 1 A 115 GLY THR ALA SER GLY GLY GLU ASN GLU ARG GLU ASP LEU SEQRES 2 A 115 GLU GLN GLU TRP LYS PRO PRO ASP GLU GLU LEU ILE LYS SEQRES 3 A 115 LYS LEU VAL ASP GLN ILE GLU PHE TYR PHE SER ASP GLU SEQRES 4 A 115 ASN LEU GLU LYS ASP ALA PHE LEU LEU LYS HIS VAL ARG SEQRES 5 A 115 ARG ASN LYS LEU GLY TYR VAL SER VAL LYS LEU LEU THR SEQRES 6 A 115 SER PHE LYS LYS VAL LYS HIS LEU THR ARG ASP TRP ARG SEQRES 7 A 115 THR THR ALA HIS ALA LEU LYS TYR SER VAL VAL LEU GLU SEQRES 8 A 115 LEU ASN GLU ASP HIS ARG LYS VAL ARG ARG THR THR PRO SEQRES 9 A 115 VAL PRO LEU PHE PRO ASN GLU ASN LEU PRO SER HELIX 1 1 ASP A 89 PHE A 104 1 16 HELIX 2 2 SER A 105 GLU A 110 1 6 HELIX 3 3 LEU A 115 ARG A 120 1 6 HELIX 4 4 SER A 128 SER A 134 1 7 HELIX 5 5 ASP A 144 TYR A 154 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1