HEADER RNA BINDING PROTEIN 18-AUG-14 2MTG TITLE SOLUTION STRUCTURE OF THE RRM1 OF HUMAN LARP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LA-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACHERON, ACHN, LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-DUET1 KEYWDS LARP6, RRM, LA-RELATED PROTEINS, ACHERON, LARP, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.MARTINO,A.R.ATKINSON,G.KELLY,M.R.CONTE REVDAT 2 28-JAN-15 2MTG 1 JRNL REVDAT 1 24-DEC-14 2MTG 0 JRNL AUTH L.MARTINO,S.PENNELL,G.KELLY,B.BUSI,P.BROWN,R.A.ATKINSON, JRNL AUTH 2 N.J.SALISBURY,Z.H.OOI,K.W.SEE,S.J.SMERDON,C.ALFANO,T.T.BUI, JRNL AUTH 3 M.R.CONTE JRNL TITL SYNERGIC INTERPLAY OF THE LA MOTIF, RRM1 AND THE INTERDOMAIN JRNL TITL 2 LINKER OF LARP6 IN THE RECOGNITION OF COLLAGEN MRNA EXPANDS JRNL TITL 3 THE RNA BINDING REPERTOIRE OF THE LA MODULE. JRNL REF NUCLEIC ACIDS RES. V. 43 645 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25488812 JRNL DOI 10.1093/NAR/GKU1287 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.MARTINO,S.PENNELL,G.KELLY,B.BUSI,P.BROWN,A.R.ATKINSON, REMARK 1 AUTH 2 N.JH.SALISBURY,Z.H.OOI,K.W.SEE,S.J.SMERDON,C.ALFANO,T.BUI, REMARK 1 AUTH 3 M.R.CONTE REMARK 1 TITL 1H, 15N AND 13C CHEMICAL SHIFT ASSIGNMENTS OF THE LA MOTIF REMARK 1 TITL 2 AND RRM1 FROM HUMAN LARP6 REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB104024. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.25 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.7 MM [U-95% 13C; U-95% REMARK 210 15N] LARP6 RRM1, 50 MM TRIS, 100 REMARK 210 MM POTASSIUM CHLORIDE, 1 MM DTT, REMARK 210 10 % [U-100% 2H] D2O, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.21, XEASY, NMRPIPE REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 177 REMARK 465 ASN A 178 REMARK 465 GLU A 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 269 H HIS A 273 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 184 72.76 -162.10 REMARK 500 1 ALA A 201 99.38 55.56 REMARK 500 1 ASN A 206 -77.24 -70.23 REMARK 500 1 ARG A 208 -154.77 -49.21 REMARK 500 1 ARG A 237 -85.32 -137.37 REMARK 500 1 TYR A 250 39.09 -92.33 REMARK 500 1 GLN A 252 -26.37 -174.47 REMARK 500 1 MET A 286 126.10 -30.23 REMARK 500 2 LYS A 184 76.20 172.50 REMARK 500 2 ASP A 190 44.71 37.25 REMARK 500 2 ALA A 201 101.79 64.23 REMARK 500 2 LYS A 205 -63.30 -144.18 REMARK 500 2 ASN A 206 -71.79 -162.65 REMARK 500 2 ARG A 208 -155.49 -47.34 REMARK 500 2 ARG A 237 -153.51 -132.25 REMARK 500 2 GLU A 238 97.67 -55.35 REMARK 500 2 TYR A 250 44.79 -90.69 REMARK 500 2 GLN A 252 -26.09 -179.72 REMARK 500 2 MET A 286 130.38 -30.77 REMARK 500 2 MET A 293 96.08 -176.21 REMARK 500 3 LYS A 184 73.24 -160.40 REMARK 500 3 ASP A 190 72.46 -18.57 REMARK 500 3 ALA A 201 92.38 44.40 REMARK 500 3 GLN A 204 44.46 -93.85 REMARK 500 3 ARG A 208 -160.13 -42.31 REMARK 500 3 SER A 229 144.13 -171.73 REMARK 500 3 PRO A 235 165.53 -46.78 REMARK 500 3 ARG A 237 -87.31 -135.32 REMARK 500 3 TYR A 250 39.18 -96.63 REMARK 500 3 GLN A 252 -25.93 -178.33 REMARK 500 3 VAL A 253 20.47 -78.98 REMARK 500 3 LYS A 283 -168.65 -106.62 REMARK 500 3 MET A 286 110.34 -32.97 REMARK 500 3 MET A 293 102.93 -176.87 REMARK 500 4 LYS A 184 75.12 176.79 REMARK 500 4 ASP A 190 87.71 -23.42 REMARK 500 4 GLN A 204 29.96 -156.80 REMARK 500 4 ARG A 208 -156.18 -46.89 REMARK 500 4 PRO A 235 165.14 -44.33 REMARK 500 4 ARG A 237 -82.31 -149.01 REMARK 500 4 TYR A 250 42.55 -93.19 REMARK 500 4 SER A 251 94.37 -45.96 REMARK 500 4 GLN A 252 -32.77 -149.43 REMARK 500 4 GLU A 265 143.93 -172.52 REMARK 500 4 GLU A 284 67.97 -69.85 REMARK 500 4 MET A 286 115.25 -37.74 REMARK 500 5 LYS A 184 79.10 -173.33 REMARK 500 5 ALA A 201 131.47 63.71 REMARK 500 5 PRO A 203 -175.36 -57.62 REMARK 500 5 ASN A 206 -78.38 64.37 REMARK 500 REMARK 500 THIS ENTRY HAS 221 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25160 RELATED DB: BMRB DBREF 2MTG A 178 295 UNP Q9BRS8 LARP6_HUMAN 178 295 SEQADV 2MTG GLY A 177 UNP Q9BRS8 EXPRESSION TAG SEQRES 1 A 119 GLY ASN GLU ASN LEU PRO SER LYS MET LEU LEU VAL TYR SEQRES 2 A 119 ASP LEU TYR LEU SER PRO LYS LEU TRP ALA LEU ALA THR SEQRES 3 A 119 PRO GLN LYS ASN GLY ARG VAL GLN GLU LYS VAL MET GLU SEQRES 4 A 119 HIS LEU LEU LYS LEU PHE GLY THR PHE GLY VAL ILE SER SEQRES 5 A 119 SER VAL ARG ILE LEU LYS PRO GLY ARG GLU LEU PRO PRO SEQRES 6 A 119 ASP ILE ARG ARG ILE SER SER ARG TYR SER GLN VAL GLY SEQRES 7 A 119 THR GLN GLU CYS ALA ILE VAL GLU PHE GLU GLU VAL GLU SEQRES 8 A 119 ALA ALA ILE LYS ALA HIS GLU PHE MET ILE THR GLU SER SEQRES 9 A 119 GLN GLY LYS GLU ASN MET LYS ALA VAL LEU ILE GLY MET SEQRES 10 A 119 LYS PRO HELIX 1 1 ARG A 208 GLY A 225 1 18 HELIX 2 2 PRO A 240 SER A 247 1 8 HELIX 3 3 GLU A 265 SER A 280 1 16 SHEET 1 A 4 ILE A 227 LEU A 233 0 SHEET 2 A 4 CYS A 258 PHE A 263 -1 O ILE A 260 N ARG A 231 SHEET 3 A 4 MET A 185 TYR A 189 -1 N VAL A 188 O ALA A 259 SHEET 4 A 4 LYS A 287 ILE A 291 -1 O LYS A 287 N TYR A 189 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1