data_2MTZ # _entry.id 2MTZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104042 RCSB ? ? 2MTZ PDB pdb_00002mtz 10.2210/pdb2mtz/pdb 25192 BMRB ? ? D_1000104042 WWPDB ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 18037 BMRB 'NMR STRUCTURE OF THE IMIPENEM-ACYLATED L,D-TRANSPEPTIDASE FROM BACILLUS SUBTILIS' unspecified 25192 BMRB . unspecified 3ZQD PDB 'HADDOCK starting structure' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MTZ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-09-02 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schanda, P.' 1 'Triboulet, S.' 2 'Laguri, C.' 3 'Bougault, C.' 4 'Ayala, I.' 5 'Callon, M.' 6 'Arthur, M.' 7 'Simorre, J.' 8 # _citation.id primary _citation.title 'Atomic model of a cell-wall cross-linking enzyme in complex with an intact bacterial peptidoglycan.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 17852 _citation.page_last 17860 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25429710 _citation.pdbx_database_id_DOI 10.1021/ja5105987 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schanda, P.' 1 ? primary 'Triboulet, S.' 2 ? primary 'Laguri, C.' 3 ? primary 'Bougault, C.M.' 4 ? primary 'Ayala, I.' 5 ? primary 'Callon, M.' 6 ? primary 'Arthur, M.' 7 ? primary 'Simorre, J.P.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative L,D-transpeptidase YkuD' 18960.732 1 2.-.-.- ? 'UNP residues 2-167' ? 2 polymer nat 'intact bacterial peptidoglycan' 461.466 6 ? ? ? ? 3 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid ; 2888.701 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Spore protein YkuD' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GRKLLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMK TYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNG TRVTINRGSHHHHHH ; ;GRKLLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMK TYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNG TRVTINRGSHHHHHH ; A ? 2 'polypeptide(L)' no yes 'A(FGA)(API)(DAL)' AEKA B,C,D,E,F,G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 LYS n 1 4 LEU n 1 5 LEU n 1 6 THR n 1 7 TYR n 1 8 GLN n 1 9 VAL n 1 10 LYS n 1 11 GLN n 1 12 GLY n 1 13 ASP n 1 14 THR n 1 15 LEU n 1 16 ASN n 1 17 SER n 1 18 ILE n 1 19 ALA n 1 20 ALA n 1 21 ASP n 1 22 PHE n 1 23 ARG n 1 24 ILE n 1 25 SER n 1 26 THR n 1 27 ALA n 1 28 ALA n 1 29 LEU n 1 30 LEU n 1 31 GLN n 1 32 ALA n 1 33 ASN n 1 34 PRO n 1 35 SER n 1 36 LEU n 1 37 GLN n 1 38 ALA n 1 39 GLY n 1 40 LEU n 1 41 THR n 1 42 ALA n 1 43 GLY n 1 44 GLN n 1 45 SER n 1 46 ILE n 1 47 VAL n 1 48 ILE n 1 49 PRO n 1 50 GLY n 1 51 LEU n 1 52 PRO n 1 53 ASP n 1 54 PRO n 1 55 TYR n 1 56 THR n 1 57 ILE n 1 58 PRO n 1 59 TYR n 1 60 HIS n 1 61 ILE n 1 62 ALA n 1 63 VAL n 1 64 SER n 1 65 ILE n 1 66 GLY n 1 67 ALA n 1 68 LYS n 1 69 THR n 1 70 LEU n 1 71 THR n 1 72 LEU n 1 73 SER n 1 74 LEU n 1 75 ASN n 1 76 ASN n 1 77 ARG n 1 78 VAL n 1 79 MET n 1 80 LYS n 1 81 THR n 1 82 TYR n 1 83 PRO n 1 84 ILE n 1 85 ALA n 1 86 VAL n 1 87 GLY n 1 88 LYS n 1 89 ILE n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 THR n 1 94 PRO n 1 95 THR n 1 96 GLY n 1 97 GLU n 1 98 PHE n 1 99 TYR n 1 100 ILE n 1 101 ILE n 1 102 ASN n 1 103 ARG n 1 104 GLN n 1 105 ARG n 1 106 ASN n 1 107 PRO n 1 108 GLY n 1 109 GLY n 1 110 PRO n 1 111 PHE n 1 112 GLY n 1 113 ALA n 1 114 TYR n 1 115 TRP n 1 116 LEU n 1 117 SER n 1 118 LEU n 1 119 SER n 1 120 LYS n 1 121 GLN n 1 122 HIS n 1 123 TYR n 1 124 GLY n 1 125 ILE n 1 126 HIS n 1 127 GLY n 1 128 THR n 1 129 ASN n 1 130 ASN n 1 131 PRO n 1 132 ALA n 1 133 SER n 1 134 ILE n 1 135 GLY n 1 136 LYS n 1 137 ALA n 1 138 VAL n 1 139 SER n 1 140 LYS n 1 141 GLY n 1 142 CYS n 1 143 ILE n 1 144 ARG n 1 145 MET n 1 146 HIS n 1 147 ASN n 1 148 LYS n 1 149 ASP n 1 150 VAL n 1 151 ILE n 1 152 GLU n 1 153 LEU n 1 154 ALA n 1 155 SER n 1 156 ILE n 1 157 VAL n 1 158 PRO n 1 159 ASN n 1 160 GLY n 1 161 THR n 1 162 ARG n 1 163 VAL n 1 164 THR n 1 165 ILE n 1 166 ASN n 1 167 ARG n 1 168 GLY n 1 169 SER n 1 170 HIS n 1 171 HIS n 1 172 HIS n 1 173 HIS n 1 174 HIS n 1 175 HIS n 2 1 ALA n 2 2 FGA n 2 3 API n 2 4 DAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BSU14040, Y647_14120, ykuD' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET2818 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Bacillus subtilis' _entity_src_nat.pdbx_ncbi_taxonomy_id 1423 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP YKUD_BACSU O34816 1 ;LTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPI AVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNGTRVT INR ; 2 ? 2 PDB 2MTZ 2MTZ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MTZ A 5 ? 167 ? O34816 2 ? 164 ? 5 167 2 2 2MTZ B 1 ? 4 ? 2MTZ 3 ? 6 ? 3 6 3 2 2MTZ C 1 ? 4 ? 2MTZ 9 ? 12 ? 9 12 4 2 2MTZ D 1 ? 4 ? 2MTZ 15 ? 18 ? 15 18 5 2 2MTZ E 1 ? 4 ? 2MTZ 21 ? 24 ? 21 24 6 2 2MTZ F 1 ? 4 ? 2MTZ 27 ? 30 ? 27 30 7 2 2MTZ G 1 ? 4 ? 2MTZ 33 ? 36 ? 33 36 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MTZ GLY A 1 ? UNP O34816 ? ? 'expression tag' 1 1 1 2MTZ ARG A 2 ? UNP O34816 ? ? 'expression tag' 2 2 1 2MTZ LYS A 3 ? UNP O34816 ? ? 'expression tag' 3 3 1 2MTZ LEU A 4 ? UNP O34816 ? ? 'expression tag' 4 4 1 2MTZ GLY A 168 ? UNP O34816 ? ? 'expression tag' 168 5 1 2MTZ SER A 169 ? UNP O34816 ? ? 'expression tag' 169 6 1 2MTZ HIS A 170 ? UNP O34816 ? ? 'expression tag' 170 7 1 2MTZ HIS A 171 ? UNP O34816 ? ? 'expression tag' 171 8 1 2MTZ HIS A 172 ? UNP O34816 ? ? 'expression tag' 172 9 1 2MTZ HIS A 173 ? UNP O34816 ? ? 'expression tag' 173 10 1 2MTZ HIS A 174 ? UNP O34816 ? ? 'expression tag' 174 11 1 2MTZ HIS A 175 ? UNP O34816 ? ? 'expression tag' 175 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMU 'D-saccharide, beta linking' . 'N-acetyl-beta-muramic acid' 'N-acetyl-muramic acid; BETA-N-ACETYLMURAMIC ACID' 'C11 H19 N O8' 293.270 API 'L-peptide linking' n '2,6-DIAMINOPIMELIC ACID' ? 'C7 H14 N2 O4' 190.197 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 FGA 'D-gamma-peptide, C-delta linking' . 'GAMMA-D-GLUTAMIC ACID' 'D-GLUTAMIC ACID' 'C5 H9 N O4' 147.129 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '13C-13C DARR' 1 2 1 hCANH 1 3 1 hNH 1 4 2 '3D HNCA' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '2.5 mg/mL [U-13C; U-15N; U-2H] protein, 3 mg/mL peptide, 50 mM HEPES' 1 ? '376 uM [U-99% 13C; U-99% 15N] protein, 50 mM HEPES' 2 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Agilent vnmrs 1 'Agilent vnmrs' 1000 Bruker 'AVANCE III' 2 'Bruker Avance III' # _pdbx_nmr_refine.entry_id 2MTZ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'HADDOCK STARTING STRUCTURE FOR CHAIN A IS PDB ENTRY 3ZQD. THE PEPTIDOGLYCAN LIGAND STARTING STRUCTURE WAS GENERATED BY CNS.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MTZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MTZ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Alexandre Bonvin' 'structure solution' HADDOCK 2.1 1 'Alexandre Bonvin' refinement HADDOCK 2.1 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MTZ _exptl.method 'SOLID-STATE NMR' _exptl.method_details ? # _struct.entry_id 2MTZ _struct.title 'Haddock model of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan hexamuropeptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MTZ _struct_keywords.pdbx_keywords 'TRANSFERASE/STRUCTURAL PROTEIN' _struct_keywords.text 'Transpeptidase, Peptidoglycan Biosynthesis, TRANSFERASE-STRUCTURAL PROTEIN complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? PHE A 22 ? THR A 14 PHE A 22 1 ? 9 HELX_P HELX_P2 2 SER A 25 ? ASN A 33 ? SER A 25 ASN A 33 1 ? 9 HELX_P HELX_P3 3 ASN A 130 ? ILE A 134 ? ASN A 130 ILE A 134 5 ? 5 HELX_P HELX_P4 4 HIS A 146 ? VAL A 157 ? HIS A 146 VAL A 157 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ALA 1 C ? ? ? 1_555 B FGA 2 N ? ? B ALA 3 B FGA 4 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale one ? B ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? B ALA 3 H AMU 11 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? B FGA 2 CD ? ? ? 1_555 B API 3 N ? ? B FGA 4 B API 5 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? B API 3 C ? ? ? 1_555 B DAL 4 N ? ? B API 5 B DAL 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale5 covale both ? C ALA 1 C ? ? ? 1_555 C FGA 2 N ? ? C ALA 9 C FGA 10 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale one ? C ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? C ALA 9 H AMU 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale7 covale both ? C FGA 2 CD ? ? ? 1_555 C API 3 N ? ? C FGA 10 C API 11 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? C API 3 C ? ? ? 1_555 C DAL 4 N ? ? C API 11 C DAL 12 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale9 covale both ? D ALA 1 C ? ? ? 1_555 D FGA 2 N ? ? D ALA 15 D FGA 16 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale10 covale one ? D ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? D ALA 15 H AMU 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale11 covale both ? D FGA 2 CD ? ? ? 1_555 D API 3 N ? ? D FGA 16 D API 17 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale12 covale both ? D API 3 C ? ? ? 1_555 D DAL 4 N ? ? D API 17 D DAL 18 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale13 covale both ? E ALA 1 C ? ? ? 1_555 E FGA 2 N ? ? E ALA 21 E FGA 22 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale one ? E ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? E ALA 21 H AMU 5 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale15 covale both ? E FGA 2 CD ? ? ? 1_555 E API 3 N ? ? E FGA 22 E API 23 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale16 covale both ? E API 3 C ? ? ? 1_555 E DAL 4 N ? ? E API 23 E DAL 24 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale17 covale both ? F ALA 1 C ? ? ? 1_555 F FGA 2 N ? ? F ALA 27 F FGA 28 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale18 covale one ? F ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? F ALA 27 H AMU 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale19 covale both ? F FGA 2 CD ? ? ? 1_555 F API 3 N ? ? F FGA 28 F API 29 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale20 covale both ? F API 3 C ? ? ? 1_555 F DAL 4 N ? ? F API 29 F DAL 30 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale21 covale both ? G ALA 1 C ? ? ? 1_555 G FGA 2 N ? ? G ALA 33 G FGA 34 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale22 covale one ? G ALA 1 N ? ? ? 1_555 H AMU . C10 ? ? G ALA 33 H AMU 1 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale23 covale both ? G FGA 2 CD ? ? ? 1_555 G API 3 N ? ? G FGA 34 G API 35 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale24 covale both ? G API 3 C ? ? ? 1_555 G DAL 4 N ? ? G API 35 G DAL 36 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale25 covale both ? H AMU . O4 ? ? ? 1_555 H NAG . C1 ? ? H AMU 1 H NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale26 covale both ? H NAG . O4 ? ? ? 1_555 H AMU . C1 ? ? H NAG 2 H AMU 3 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale27 covale both ? H AMU . O4 ? ? ? 1_555 H NAG . C1 ? ? H AMU 3 H NAG 4 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale28 covale both ? H NAG . O4 ? ? ? 1_555 H AMU . C1 ? ? H NAG 4 H AMU 5 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale29 covale both ? H AMU . O4 ? ? ? 1_555 H NAG . C1 ? ? H AMU 5 H NAG 6 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale30 covale both ? H NAG . O4 ? ? ? 1_555 H AMU . C1 ? ? H NAG 6 H AMU 7 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale31 covale both ? H AMU . O4 ? ? ? 1_555 H NAG . C1 ? ? H AMU 7 H NAG 8 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale32 covale both ? H NAG . O4 ? ? ? 1_555 H AMU . C1 ? ? H NAG 8 H AMU 9 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale33 covale both ? H AMU . O4 ? ? ? 1_555 H NAG . C1 ? ? H AMU 9 H NAG 10 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale34 covale both ? H NAG . O4 ? ? ? 1_555 H AMU . C1 ? ? H NAG 10 H AMU 11 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale35 covale both ? H AMU . O4 ? ? ? 1_555 H NAG . C1 ? ? H AMU 11 H NAG 12 1_555 ? ? ? ? ? ? ? 1.442 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 1 D . ? ALA 15 D FGA 2 D ? FGA 16 D 1 -0.10 2 ALA 1 D . ? ALA 15 D FGA 2 D ? FGA 16 D 2 0.10 3 ALA 1 D . ? ALA 15 D FGA 2 D ? FGA 16 D 3 0.00 4 ALA 1 D . ? ALA 15 D FGA 2 D ? FGA 16 D 4 0.03 5 ALA 1 D . ? ALA 15 D FGA 2 D ? FGA 16 D 5 0.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel C 1 2 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 4 ? GLN A 8 ? LEU A 4 GLN A 8 A 2 SER A 45 ? PRO A 52 ? SER A 45 PRO A 52 B 1 ARG A 77 ? PRO A 83 ? ARG A 77 PRO A 83 B 2 THR A 69 ? LEU A 74 ? THR A 69 LEU A 74 B 3 TYR A 59 ? SER A 64 ? TYR A 59 SER A 64 B 4 ARG A 162 ? ASN A 166 ? ARG A 162 ASN A 166 B 5 GLU A 97 ? TYR A 99 ? GLU A 97 TYR A 99 C 1 VAL A 86 ? GLY A 87 ? VAL A 86 GLY A 87 C 2 ALA A 137 ? VAL A 138 ? ALA A 137 VAL A 138 D 1 ASN A 102 ? ARG A 105 ? ASN A 102 ARG A 105 D 2 TYR A 114 ? SER A 117 ? TYR A 114 SER A 117 D 3 ILE A 125 ? HIS A 126 ? ILE A 125 HIS A 126 D 4 ILE A 143 ? ARG A 144 ? ILE A 143 ARG A 144 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 7 ? N TYR A 7 O ILE A 46 ? O ILE A 46 B 1 2 O TYR A 82 ? O TYR A 82 N LEU A 70 ? N LEU A 70 B 2 3 O THR A 71 ? O THR A 71 N ALA A 62 ? N ALA A 62 B 3 4 N ILE A 61 ? N ILE A 61 O THR A 164 ? O THR A 164 B 4 5 O VAL A 163 ? O VAL A 163 N PHE A 98 ? N PHE A 98 C 1 2 N VAL A 86 ? N VAL A 86 O VAL A 138 ? O VAL A 138 D 1 2 N GLN A 104 ? N GLN A 104 O TRP A 115 ? O TRP A 115 D 2 3 N LEU A 116 ? N LEU A 116 O ILE A 125 ? O ILE A 125 D 3 4 N HIS A 126 ? N HIS A 126 O ILE A 143 ? O ILE A 143 # _atom_sites.entry_id 2MTZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG H 4 HAS WRONG CHIRALITY AT ATOM C1' 2 'NAG H 8 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 TRP 115 115 115 TRP TRP A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 CYS 142 142 142 CYS CYS A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 ARG 162 162 162 ARG ARG A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 HIS 170 170 ? ? ? A . n A 1 171 HIS 171 171 ? ? ? A . n A 1 172 HIS 172 172 ? ? ? A . n A 1 173 HIS 173 173 ? ? ? A . n A 1 174 HIS 174 174 ? ? ? A . n A 1 175 HIS 175 175 ? ? ? A . n B 2 1 ALA 1 3 3 ALA ALA B . n B 2 2 FGA 2 4 4 FGA FGA B . n B 2 3 API 3 5 5 API API B . n B 2 4 DAL 4 6 6 DAL DAL B . n C 2 1 ALA 1 9 9 ALA ALA C . n C 2 2 FGA 2 10 10 FGA FGA C . n C 2 3 API 3 11 11 API API C . n C 2 4 DAL 4 12 12 DAL DAL C . n D 2 1 ALA 1 15 15 ALA ALA D . n D 2 2 FGA 2 16 16 FGA FGA D . n D 2 3 API 3 17 17 API API D . n D 2 4 DAL 4 18 18 DAL DAL D . n E 2 1 ALA 1 21 21 ALA ALA E . n E 2 2 FGA 2 22 22 FGA FGA E . n E 2 3 API 3 23 23 API API E . n E 2 4 DAL 4 24 24 DAL DAL E . n F 2 1 ALA 1 27 27 ALA ALA F . n F 2 2 FGA 2 28 28 FGA FGA F . n F 2 3 API 3 29 29 API API F . n F 2 4 DAL 4 30 30 DAL DAL F . n G 2 1 ALA 1 33 33 ALA ALA G . n G 2 2 FGA 2 34 34 FGA FGA G . n G 2 3 API 3 35 35 API API G . n G 2 4 DAL 4 36 36 DAL DAL G . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B API 3 B API 5 ? LYS '2,6-DIAMINOPIMELIC ACID' 2 C API 3 C API 11 ? LYS '2,6-DIAMINOPIMELIC ACID' 3 D API 3 D API 17 ? LYS '2,6-DIAMINOPIMELIC ACID' 4 E API 3 E API 23 ? LYS '2,6-DIAMINOPIMELIC ACID' 5 F API 3 F API 29 ? LYS '2,6-DIAMINOPIMELIC ACID' 6 G API 3 G API 35 ? LYS '2,6-DIAMINOPIMELIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-14 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 3 0 2023-11-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Database references' 5 2 'Structure model' 'Derived calculations' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Atomic model' 8 3 'Structure model' 'Data collection' 9 3 'Structure model' 'Database references' 10 3 'Structure model' 'Derived calculations' 11 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' database_PDB_caveat 4 2 'Structure model' entity 5 2 'Structure model' pdbx_branch_scheme 6 2 'Structure model' pdbx_chem_comp_identifier 7 2 'Structure model' pdbx_entity_branch 8 2 'Structure model' pdbx_entity_branch_descriptor 9 2 'Structure model' pdbx_entity_branch_link 10 2 'Structure model' pdbx_entity_branch_list 11 2 'Structure model' pdbx_entity_nonpoly 12 2 'Structure model' pdbx_nmr_software 13 2 'Structure model' pdbx_nmr_spectrometer 14 2 'Structure model' pdbx_nonpoly_scheme 15 2 'Structure model' pdbx_struct_assembly_gen 16 2 'Structure model' pdbx_validate_chiral 17 2 'Structure model' struct_asym 18 2 'Structure model' struct_conn 19 2 'Structure model' struct_ref_seq_dif 20 2 'Structure model' struct_site 21 2 'Structure model' struct_site_gen 22 3 'Structure model' atom_site 23 3 'Structure model' chem_comp 24 3 'Structure model' chem_comp_atom 25 3 'Structure model' chem_comp_bond 26 3 'Structure model' database_2 27 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_chem_comp.name' 15 2 'Structure model' '_chem_comp.type' 16 2 'Structure model' '_pdbx_nmr_software.name' 17 2 'Structure model' '_pdbx_nmr_spectrometer.model' 18 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 2 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 20 2 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 2 'Structure model' '_struct_ref_seq_dif.details' 38 3 'Structure model' '_atom_site.auth_atom_id' 39 3 'Structure model' '_atom_site.label_atom_id' 40 3 'Structure model' '_chem_comp.pdbx_synonyms' 41 3 'Structure model' '_database_2.pdbx_DOI' 42 3 'Structure model' '_database_2.pdbx_database_accession' 43 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 44 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 45 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_entry_details.entry_id 2MTZ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;THIS STRUCTURE CONTAINS A PEPTIDOGLYCAN LIGAND COMPOSED OF SIX TETRAPEPTIDES (CHAIN B, C, D, E, F, AND G) AND ONE POLYSACCHARIDE (CHAIN E) COVALENTLY LINKED TOGETHER AS ONE ENTITY. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 2.5 ? mg/mL '[U-13C; U-15N; U-2H]' 1 peptide-2 3 ? mg/mL ? 1 protein-3 376 ? uM '[U-99% 13C; U-99% 15N]' 2 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 10 ? ? -123.95 -168.39 2 1 PRO A 58 ? ? -79.69 26.74 3 1 ASN A 106 ? ? 52.48 86.67 4 1 ALA A 113 ? ? 70.77 -53.33 5 1 SER A 139 ? ? -57.18 -78.28 6 1 PRO A 158 ? ? -94.45 -142.21 7 2 ASN A 106 ? ? 53.74 89.40 8 2 ALA A 113 ? ? 71.97 -9.90 9 2 GLN A 121 ? ? -59.13 -75.11 10 2 HIS A 122 ? ? -77.62 26.36 11 2 SER A 139 ? ? -68.66 -78.88 12 3 ALA A 67 ? ? -160.54 -38.08 13 3 ASN A 76 ? ? 86.93 -14.13 14 3 MET A 79 ? ? -109.91 -66.79 15 3 ASN A 106 ? ? 61.03 89.29 16 3 ALA A 113 ? ? 71.41 -42.45 17 3 SER A 139 ? ? -65.55 -81.83 18 3 PRO A 158 ? ? -88.51 -157.17 19 4 ARG A 2 ? ? -67.27 99.43 20 4 LYS A 10 ? ? -94.35 -81.29 21 4 GLN A 11 ? ? -174.60 137.54 22 4 ASN A 76 ? ? 81.90 -1.92 23 4 THR A 95 ? ? 174.01 162.42 24 4 ASN A 106 ? ? 48.28 78.86 25 4 PRO A 110 ? ? -78.35 48.25 26 4 GLN A 121 ? ? -48.46 -74.42 27 4 SER A 139 ? ? -72.58 -84.55 28 4 THR A 164 ? ? -68.25 97.83 29 5 LYS A 3 ? ? -68.45 93.04 30 5 ASN A 76 ? ? 91.63 -1.45 31 5 MET A 79 ? ? -108.74 -63.72 32 5 ASN A 106 ? ? 56.11 85.30 33 5 ALA A 113 ? ? 71.02 -27.63 34 5 SER A 119 ? ? -79.06 27.91 35 5 LYS A 120 ? ? -170.20 125.74 36 5 SER A 139 ? ? -55.38 -80.16 37 5 PRO A 158 ? ? -86.92 -157.23 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 2 C1 ? H NAG 4 ? PLANAR . 2 3 C1 ? H NAG 8 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 170 ? A HIS 170 2 1 Y 1 A HIS 171 ? A HIS 171 3 1 Y 1 A HIS 172 ? A HIS 172 4 1 Y 1 A HIS 173 ? A HIS 173 5 1 Y 1 A HIS 174 ? A HIS 174 6 1 Y 1 A HIS 175 ? A HIS 175 7 2 Y 1 A HIS 170 ? A HIS 170 8 2 Y 1 A HIS 171 ? A HIS 171 9 2 Y 1 A HIS 172 ? A HIS 172 10 2 Y 1 A HIS 173 ? A HIS 173 11 2 Y 1 A HIS 174 ? A HIS 174 12 2 Y 1 A HIS 175 ? A HIS 175 13 3 Y 1 A HIS 170 ? A HIS 170 14 3 Y 1 A HIS 171 ? A HIS 171 15 3 Y 1 A HIS 172 ? A HIS 172 16 3 Y 1 A HIS 173 ? A HIS 173 17 3 Y 1 A HIS 174 ? A HIS 174 18 3 Y 1 A HIS 175 ? A HIS 175 19 4 Y 1 A HIS 170 ? A HIS 170 20 4 Y 1 A HIS 171 ? A HIS 171 21 4 Y 1 A HIS 172 ? A HIS 172 22 4 Y 1 A HIS 173 ? A HIS 173 23 4 Y 1 A HIS 174 ? A HIS 174 24 4 Y 1 A HIS 175 ? A HIS 175 25 5 Y 1 A HIS 170 ? A HIS 170 26 5 Y 1 A HIS 171 ? A HIS 171 27 5 Y 1 A HIS 172 ? A HIS 172 28 5 Y 1 A HIS 173 ? A HIS 173 29 5 Y 1 A HIS 174 ? A HIS 174 30 5 Y 1 A HIS 175 ? A HIS 175 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMU C1 C N R 14 AMU C2 C N R 15 AMU C3 C N R 16 AMU C4 C N S 17 AMU C5 C N R 18 AMU C6 C N N 19 AMU C7 C N N 20 AMU C8 C N N 21 AMU C9 C N R 22 AMU C10 C N N 23 AMU C11 C N N 24 AMU O1 O N N 25 AMU O3 O N N 26 AMU O4 O N N 27 AMU O5 O N N 28 AMU O6 O N N 29 AMU O7 O N N 30 AMU O10 O N N 31 AMU O11 O N N 32 AMU N2 N N N 33 AMU H1 H N N 34 AMU H2 H N N 35 AMU H3 H N N 36 AMU H4 H N N 37 AMU H5 H N N 38 AMU H61 H N N 39 AMU H62 H N N 40 AMU H81 H N N 41 AMU H82 H N N 42 AMU H83 H N N 43 AMU H9 H N N 44 AMU H111 H N N 45 AMU H112 H N N 46 AMU H113 H N N 47 AMU HO1 H N N 48 AMU HO4 H N N 49 AMU HO6 H N N 50 AMU HO11 H N N 51 AMU HN2 H N N 52 API C C N N 53 API CA C N S 54 API C3 C N N 55 API C4 C N N 56 API C5 C N N 57 API C6 C N R 58 API C7 C N N 59 API O O N N 60 API OXT O N N 61 API O3 O N N 62 API O4 O N N 63 API N N N N 64 API N6 N N N 65 API HA H N N 66 API H31 H N N 67 API H32 H N N 68 API H41 H N N 69 API H42 H N N 70 API H51 H N N 71 API H52 H N N 72 API H6 H N N 73 API HXT H N N 74 API HO4 H N N 75 API H H N N 76 API H2 H N N 77 API HN61 H N N 78 API HN62 H N N 79 ARG N N N N 80 ARG CA C N S 81 ARG C C N N 82 ARG O O N N 83 ARG CB C N N 84 ARG CG C N N 85 ARG CD C N N 86 ARG NE N N N 87 ARG CZ C N N 88 ARG NH1 N N N 89 ARG NH2 N N N 90 ARG OXT O N N 91 ARG H H N N 92 ARG H2 H N N 93 ARG HA H N N 94 ARG HB2 H N N 95 ARG HB3 H N N 96 ARG HG2 H N N 97 ARG HG3 H N N 98 ARG HD2 H N N 99 ARG HD3 H N N 100 ARG HE H N N 101 ARG HH11 H N N 102 ARG HH12 H N N 103 ARG HH21 H N N 104 ARG HH22 H N N 105 ARG HXT H N N 106 ASN N N N N 107 ASN CA C N S 108 ASN C C N N 109 ASN O O N N 110 ASN CB C N N 111 ASN CG C N N 112 ASN OD1 O N N 113 ASN ND2 N N N 114 ASN OXT O N N 115 ASN H H N N 116 ASN H2 H N N 117 ASN HA H N N 118 ASN HB2 H N N 119 ASN HB3 H N N 120 ASN HD21 H N N 121 ASN HD22 H N N 122 ASN HXT H N N 123 ASP N N N N 124 ASP CA C N S 125 ASP C C N N 126 ASP O O N N 127 ASP CB C N N 128 ASP CG C N N 129 ASP OD1 O N N 130 ASP OD2 O N N 131 ASP OXT O N N 132 ASP H H N N 133 ASP H2 H N N 134 ASP HA H N N 135 ASP HB2 H N N 136 ASP HB3 H N N 137 ASP HD2 H N N 138 ASP HXT H N N 139 CYS N N N N 140 CYS CA C N R 141 CYS C C N N 142 CYS O O N N 143 CYS CB C N N 144 CYS SG S N N 145 CYS OXT O N N 146 CYS H H N N 147 CYS H2 H N N 148 CYS HA H N N 149 CYS HB2 H N N 150 CYS HB3 H N N 151 CYS HG H N N 152 CYS HXT H N N 153 DAL N N N N 154 DAL CA C N R 155 DAL CB C N N 156 DAL C C N N 157 DAL O O N N 158 DAL OXT O N N 159 DAL H H N N 160 DAL H2 H N N 161 DAL HA H N N 162 DAL HB1 H N N 163 DAL HB2 H N N 164 DAL HB3 H N N 165 DAL HXT H N N 166 FGA N N N N 167 FGA CA C N R 168 FGA C C N N 169 FGA O O N N 170 FGA CB C N N 171 FGA CG C N N 172 FGA CD C N N 173 FGA OE1 O N N 174 FGA OE2 O N N 175 FGA OXT O N N 176 FGA H H N N 177 FGA H2 H N N 178 FGA HA H N N 179 FGA HB2 H N N 180 FGA HB3 H N N 181 FGA HG2 H N N 182 FGA HG3 H N N 183 FGA HE2 H N N 184 FGA HXT H N N 185 GLN N N N N 186 GLN CA C N S 187 GLN C C N N 188 GLN O O N N 189 GLN CB C N N 190 GLN CG C N N 191 GLN CD C N N 192 GLN OE1 O N N 193 GLN NE2 N N N 194 GLN OXT O N N 195 GLN H H N N 196 GLN H2 H N N 197 GLN HA H N N 198 GLN HB2 H N N 199 GLN HB3 H N N 200 GLN HG2 H N N 201 GLN HG3 H N N 202 GLN HE21 H N N 203 GLN HE22 H N N 204 GLN HXT H N N 205 GLU N N N N 206 GLU CA C N S 207 GLU C C N N 208 GLU O O N N 209 GLU CB C N N 210 GLU CG C N N 211 GLU CD C N N 212 GLU OE1 O N N 213 GLU OE2 O N N 214 GLU OXT O N N 215 GLU H H N N 216 GLU H2 H N N 217 GLU HA H N N 218 GLU HB2 H N N 219 GLU HB3 H N N 220 GLU HG2 H N N 221 GLU HG3 H N N 222 GLU HE2 H N N 223 GLU HXT H N N 224 GLY N N N N 225 GLY CA C N N 226 GLY C C N N 227 GLY O O N N 228 GLY OXT O N N 229 GLY H H N N 230 GLY H2 H N N 231 GLY HA2 H N N 232 GLY HA3 H N N 233 GLY HXT H N N 234 HIS N N N N 235 HIS CA C N S 236 HIS C C N N 237 HIS O O N N 238 HIS CB C N N 239 HIS CG C Y N 240 HIS ND1 N Y N 241 HIS CD2 C Y N 242 HIS CE1 C Y N 243 HIS NE2 N Y N 244 HIS OXT O N N 245 HIS H H N N 246 HIS H2 H N N 247 HIS HA H N N 248 HIS HB2 H N N 249 HIS HB3 H N N 250 HIS HD1 H N N 251 HIS HD2 H N N 252 HIS HE1 H N N 253 HIS HE2 H N N 254 HIS HXT H N N 255 ILE N N N N 256 ILE CA C N S 257 ILE C C N N 258 ILE O O N N 259 ILE CB C N S 260 ILE CG1 C N N 261 ILE CG2 C N N 262 ILE CD1 C N N 263 ILE OXT O N N 264 ILE H H N N 265 ILE H2 H N N 266 ILE HA H N N 267 ILE HB H N N 268 ILE HG12 H N N 269 ILE HG13 H N N 270 ILE HG21 H N N 271 ILE HG22 H N N 272 ILE HG23 H N N 273 ILE HD11 H N N 274 ILE HD12 H N N 275 ILE HD13 H N N 276 ILE HXT H N N 277 LEU N N N N 278 LEU CA C N S 279 LEU C C N N 280 LEU O O N N 281 LEU CB C N N 282 LEU CG C N N 283 LEU CD1 C N N 284 LEU CD2 C N N 285 LEU OXT O N N 286 LEU H H N N 287 LEU H2 H N N 288 LEU HA H N N 289 LEU HB2 H N N 290 LEU HB3 H N N 291 LEU HG H N N 292 LEU HD11 H N N 293 LEU HD12 H N N 294 LEU HD13 H N N 295 LEU HD21 H N N 296 LEU HD22 H N N 297 LEU HD23 H N N 298 LEU HXT H N N 299 LYS N N N N 300 LYS CA C N S 301 LYS C C N N 302 LYS O O N N 303 LYS CB C N N 304 LYS CG C N N 305 LYS CD C N N 306 LYS CE C N N 307 LYS NZ N N N 308 LYS OXT O N N 309 LYS H H N N 310 LYS H2 H N N 311 LYS HA H N N 312 LYS HB2 H N N 313 LYS HB3 H N N 314 LYS HG2 H N N 315 LYS HG3 H N N 316 LYS HD2 H N N 317 LYS HD3 H N N 318 LYS HE2 H N N 319 LYS HE3 H N N 320 LYS HZ1 H N N 321 LYS HZ2 H N N 322 LYS HZ3 H N N 323 LYS HXT H N N 324 MET N N N N 325 MET CA C N S 326 MET C C N N 327 MET O O N N 328 MET CB C N N 329 MET CG C N N 330 MET SD S N N 331 MET CE C N N 332 MET OXT O N N 333 MET H H N N 334 MET H2 H N N 335 MET HA H N N 336 MET HB2 H N N 337 MET HB3 H N N 338 MET HG2 H N N 339 MET HG3 H N N 340 MET HE1 H N N 341 MET HE2 H N N 342 MET HE3 H N N 343 MET HXT H N N 344 NAG C1 C N R 345 NAG C2 C N R 346 NAG C3 C N R 347 NAG C4 C N S 348 NAG C5 C N R 349 NAG C6 C N N 350 NAG C7 C N N 351 NAG C8 C N N 352 NAG N2 N N N 353 NAG O1 O N N 354 NAG O3 O N N 355 NAG O4 O N N 356 NAG O5 O N N 357 NAG O6 O N N 358 NAG O7 O N N 359 NAG H1 H N N 360 NAG H2 H N N 361 NAG H3 H N N 362 NAG H4 H N N 363 NAG H5 H N N 364 NAG H61 H N N 365 NAG H62 H N N 366 NAG H81 H N N 367 NAG H82 H N N 368 NAG H83 H N N 369 NAG HN2 H N N 370 NAG HO1 H N N 371 NAG HO3 H N N 372 NAG HO4 H N N 373 NAG HO6 H N N 374 PHE N N N N 375 PHE CA C N S 376 PHE C C N N 377 PHE O O N N 378 PHE CB C N N 379 PHE CG C Y N 380 PHE CD1 C Y N 381 PHE CD2 C Y N 382 PHE CE1 C Y N 383 PHE CE2 C Y N 384 PHE CZ C Y N 385 PHE OXT O N N 386 PHE H H N N 387 PHE H2 H N N 388 PHE HA H N N 389 PHE HB2 H N N 390 PHE HB3 H N N 391 PHE HD1 H N N 392 PHE HD2 H N N 393 PHE HE1 H N N 394 PHE HE2 H N N 395 PHE HZ H N N 396 PHE HXT H N N 397 PRO N N N N 398 PRO CA C N S 399 PRO C C N N 400 PRO O O N N 401 PRO CB C N N 402 PRO CG C N N 403 PRO CD C N N 404 PRO OXT O N N 405 PRO H H N N 406 PRO HA H N N 407 PRO HB2 H N N 408 PRO HB3 H N N 409 PRO HG2 H N N 410 PRO HG3 H N N 411 PRO HD2 H N N 412 PRO HD3 H N N 413 PRO HXT H N N 414 SER N N N N 415 SER CA C N S 416 SER C C N N 417 SER O O N N 418 SER CB C N N 419 SER OG O N N 420 SER OXT O N N 421 SER H H N N 422 SER H2 H N N 423 SER HA H N N 424 SER HB2 H N N 425 SER HB3 H N N 426 SER HG H N N 427 SER HXT H N N 428 THR N N N N 429 THR CA C N S 430 THR C C N N 431 THR O O N N 432 THR CB C N R 433 THR OG1 O N N 434 THR CG2 C N N 435 THR OXT O N N 436 THR H H N N 437 THR H2 H N N 438 THR HA H N N 439 THR HB H N N 440 THR HG1 H N N 441 THR HG21 H N N 442 THR HG22 H N N 443 THR HG23 H N N 444 THR HXT H N N 445 TRP N N N N 446 TRP CA C N S 447 TRP C C N N 448 TRP O O N N 449 TRP CB C N N 450 TRP CG C Y N 451 TRP CD1 C Y N 452 TRP CD2 C Y N 453 TRP NE1 N Y N 454 TRP CE2 C Y N 455 TRP CE3 C Y N 456 TRP CZ2 C Y N 457 TRP CZ3 C Y N 458 TRP CH2 C Y N 459 TRP OXT O N N 460 TRP H H N N 461 TRP H2 H N N 462 TRP HA H N N 463 TRP HB2 H N N 464 TRP HB3 H N N 465 TRP HD1 H N N 466 TRP HE1 H N N 467 TRP HE3 H N N 468 TRP HZ2 H N N 469 TRP HZ3 H N N 470 TRP HH2 H N N 471 TRP HXT H N N 472 TYR N N N N 473 TYR CA C N S 474 TYR C C N N 475 TYR O O N N 476 TYR CB C N N 477 TYR CG C Y N 478 TYR CD1 C Y N 479 TYR CD2 C Y N 480 TYR CE1 C Y N 481 TYR CE2 C Y N 482 TYR CZ C Y N 483 TYR OH O N N 484 TYR OXT O N N 485 TYR H H N N 486 TYR H2 H N N 487 TYR HA H N N 488 TYR HB2 H N N 489 TYR HB3 H N N 490 TYR HD1 H N N 491 TYR HD2 H N N 492 TYR HE1 H N N 493 TYR HE2 H N N 494 TYR HH H N N 495 TYR HXT H N N 496 VAL N N N N 497 VAL CA C N S 498 VAL C C N N 499 VAL O O N N 500 VAL CB C N N 501 VAL CG1 C N N 502 VAL CG2 C N N 503 VAL OXT O N N 504 VAL H H N N 505 VAL H2 H N N 506 VAL HA H N N 507 VAL HB H N N 508 VAL HG11 H N N 509 VAL HG12 H N N 510 VAL HG13 H N N 511 VAL HG21 H N N 512 VAL HG22 H N N 513 VAL HG23 H N N 514 VAL HXT H N N 515 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMU C1 C2 sing N N 13 AMU C1 O1 sing N N 14 AMU C1 O5 sing N N 15 AMU C1 H1 sing N N 16 AMU C2 C3 sing N N 17 AMU C2 N2 sing N N 18 AMU C2 H2 sing N N 19 AMU C3 C4 sing N N 20 AMU C3 O3 sing N N 21 AMU C3 H3 sing N N 22 AMU C4 C5 sing N N 23 AMU C4 O4 sing N N 24 AMU C4 H4 sing N N 25 AMU C5 C6 sing N N 26 AMU C5 O5 sing N N 27 AMU C5 H5 sing N N 28 AMU C6 O6 sing N N 29 AMU C6 H61 sing N N 30 AMU C6 H62 sing N N 31 AMU C7 C8 sing N N 32 AMU C7 O7 doub N N 33 AMU C7 N2 sing N N 34 AMU C8 H81 sing N N 35 AMU C8 H82 sing N N 36 AMU C8 H83 sing N N 37 AMU C9 C10 sing N N 38 AMU C9 C11 sing N N 39 AMU C9 O3 sing N N 40 AMU C9 H9 sing N N 41 AMU C10 O10 doub N N 42 AMU C10 O11 sing N N 43 AMU C11 H111 sing N N 44 AMU C11 H112 sing N N 45 AMU C11 H113 sing N N 46 AMU O1 HO1 sing N N 47 AMU O4 HO4 sing N N 48 AMU O6 HO6 sing N N 49 AMU O11 HO11 sing N N 50 AMU N2 HN2 sing N N 51 API C CA sing N N 52 API C O doub N N 53 API C OXT sing N N 54 API CA C3 sing N N 55 API CA N sing N N 56 API CA HA sing N N 57 API C3 C4 sing N N 58 API C3 H31 sing N N 59 API C3 H32 sing N N 60 API C4 C5 sing N N 61 API C4 H41 sing N N 62 API C4 H42 sing N N 63 API C5 C6 sing N N 64 API C5 H51 sing N N 65 API C5 H52 sing N N 66 API C6 C7 sing N N 67 API C6 N6 sing N N 68 API C6 H6 sing N N 69 API C7 O3 doub N N 70 API C7 O4 sing N N 71 API OXT HXT sing N N 72 API O4 HO4 sing N N 73 API N H sing N N 74 API N H2 sing N N 75 API N6 HN61 sing N N 76 API N6 HN62 sing N N 77 ARG N CA sing N N 78 ARG N H sing N N 79 ARG N H2 sing N N 80 ARG CA C sing N N 81 ARG CA CB sing N N 82 ARG CA HA sing N N 83 ARG C O doub N N 84 ARG C OXT sing N N 85 ARG CB CG sing N N 86 ARG CB HB2 sing N N 87 ARG CB HB3 sing N N 88 ARG CG CD sing N N 89 ARG CG HG2 sing N N 90 ARG CG HG3 sing N N 91 ARG CD NE sing N N 92 ARG CD HD2 sing N N 93 ARG CD HD3 sing N N 94 ARG NE CZ sing N N 95 ARG NE HE sing N N 96 ARG CZ NH1 sing N N 97 ARG CZ NH2 doub N N 98 ARG NH1 HH11 sing N N 99 ARG NH1 HH12 sing N N 100 ARG NH2 HH21 sing N N 101 ARG NH2 HH22 sing N N 102 ARG OXT HXT sing N N 103 ASN N CA sing N N 104 ASN N H sing N N 105 ASN N H2 sing N N 106 ASN CA C sing N N 107 ASN CA CB sing N N 108 ASN CA HA sing N N 109 ASN C O doub N N 110 ASN C OXT sing N N 111 ASN CB CG sing N N 112 ASN CB HB2 sing N N 113 ASN CB HB3 sing N N 114 ASN CG OD1 doub N N 115 ASN CG ND2 sing N N 116 ASN ND2 HD21 sing N N 117 ASN ND2 HD22 sing N N 118 ASN OXT HXT sing N N 119 ASP N CA sing N N 120 ASP N H sing N N 121 ASP N H2 sing N N 122 ASP CA C sing N N 123 ASP CA CB sing N N 124 ASP CA HA sing N N 125 ASP C O doub N N 126 ASP C OXT sing N N 127 ASP CB CG sing N N 128 ASP CB HB2 sing N N 129 ASP CB HB3 sing N N 130 ASP CG OD1 doub N N 131 ASP CG OD2 sing N N 132 ASP OD2 HD2 sing N N 133 ASP OXT HXT sing N N 134 CYS N CA sing N N 135 CYS N H sing N N 136 CYS N H2 sing N N 137 CYS CA C sing N N 138 CYS CA CB sing N N 139 CYS CA HA sing N N 140 CYS C O doub N N 141 CYS C OXT sing N N 142 CYS CB SG sing N N 143 CYS CB HB2 sing N N 144 CYS CB HB3 sing N N 145 CYS SG HG sing N N 146 CYS OXT HXT sing N N 147 DAL N CA sing N N 148 DAL N H sing N N 149 DAL N H2 sing N N 150 DAL CA CB sing N N 151 DAL CA C sing N N 152 DAL CA HA sing N N 153 DAL CB HB1 sing N N 154 DAL CB HB2 sing N N 155 DAL CB HB3 sing N N 156 DAL C O doub N N 157 DAL C OXT sing N N 158 DAL OXT HXT sing N N 159 FGA N CA sing N N 160 FGA N H sing N N 161 FGA N H2 sing N N 162 FGA CA C sing N N 163 FGA CA CB sing N N 164 FGA CA HA sing N N 165 FGA C O doub N N 166 FGA C OXT sing N N 167 FGA CB CG sing N N 168 FGA CB HB2 sing N N 169 FGA CB HB3 sing N N 170 FGA CG CD sing N N 171 FGA CG HG2 sing N N 172 FGA CG HG3 sing N N 173 FGA CD OE1 doub N N 174 FGA CD OE2 sing N N 175 FGA OE2 HE2 sing N N 176 FGA OXT HXT sing N N 177 GLN N CA sing N N 178 GLN N H sing N N 179 GLN N H2 sing N N 180 GLN CA C sing N N 181 GLN CA CB sing N N 182 GLN CA HA sing N N 183 GLN C O doub N N 184 GLN C OXT sing N N 185 GLN CB CG sing N N 186 GLN CB HB2 sing N N 187 GLN CB HB3 sing N N 188 GLN CG CD sing N N 189 GLN CG HG2 sing N N 190 GLN CG HG3 sing N N 191 GLN CD OE1 doub N N 192 GLN CD NE2 sing N N 193 GLN NE2 HE21 sing N N 194 GLN NE2 HE22 sing N N 195 GLN OXT HXT sing N N 196 GLU N CA sing N N 197 GLU N H sing N N 198 GLU N H2 sing N N 199 GLU CA C sing N N 200 GLU CA CB sing N N 201 GLU CA HA sing N N 202 GLU C O doub N N 203 GLU C OXT sing N N 204 GLU CB CG sing N N 205 GLU CB HB2 sing N N 206 GLU CB HB3 sing N N 207 GLU CG CD sing N N 208 GLU CG HG2 sing N N 209 GLU CG HG3 sing N N 210 GLU CD OE1 doub N N 211 GLU CD OE2 sing N N 212 GLU OE2 HE2 sing N N 213 GLU OXT HXT sing N N 214 GLY N CA sing N N 215 GLY N H sing N N 216 GLY N H2 sing N N 217 GLY CA C sing N N 218 GLY CA HA2 sing N N 219 GLY CA HA3 sing N N 220 GLY C O doub N N 221 GLY C OXT sing N N 222 GLY OXT HXT sing N N 223 HIS N CA sing N N 224 HIS N H sing N N 225 HIS N H2 sing N N 226 HIS CA C sing N N 227 HIS CA CB sing N N 228 HIS CA HA sing N N 229 HIS C O doub N N 230 HIS C OXT sing N N 231 HIS CB CG sing N N 232 HIS CB HB2 sing N N 233 HIS CB HB3 sing N N 234 HIS CG ND1 sing Y N 235 HIS CG CD2 doub Y N 236 HIS ND1 CE1 doub Y N 237 HIS ND1 HD1 sing N N 238 HIS CD2 NE2 sing Y N 239 HIS CD2 HD2 sing N N 240 HIS CE1 NE2 sing Y N 241 HIS CE1 HE1 sing N N 242 HIS NE2 HE2 sing N N 243 HIS OXT HXT sing N N 244 ILE N CA sing N N 245 ILE N H sing N N 246 ILE N H2 sing N N 247 ILE CA C sing N N 248 ILE CA CB sing N N 249 ILE CA HA sing N N 250 ILE C O doub N N 251 ILE C OXT sing N N 252 ILE CB CG1 sing N N 253 ILE CB CG2 sing N N 254 ILE CB HB sing N N 255 ILE CG1 CD1 sing N N 256 ILE CG1 HG12 sing N N 257 ILE CG1 HG13 sing N N 258 ILE CG2 HG21 sing N N 259 ILE CG2 HG22 sing N N 260 ILE CG2 HG23 sing N N 261 ILE CD1 HD11 sing N N 262 ILE CD1 HD12 sing N N 263 ILE CD1 HD13 sing N N 264 ILE OXT HXT sing N N 265 LEU N CA sing N N 266 LEU N H sing N N 267 LEU N H2 sing N N 268 LEU CA C sing N N 269 LEU CA CB sing N N 270 LEU CA HA sing N N 271 LEU C O doub N N 272 LEU C OXT sing N N 273 LEU CB CG sing N N 274 LEU CB HB2 sing N N 275 LEU CB HB3 sing N N 276 LEU CG CD1 sing N N 277 LEU CG CD2 sing N N 278 LEU CG HG sing N N 279 LEU CD1 HD11 sing N N 280 LEU CD1 HD12 sing N N 281 LEU CD1 HD13 sing N N 282 LEU CD2 HD21 sing N N 283 LEU CD2 HD22 sing N N 284 LEU CD2 HD23 sing N N 285 LEU OXT HXT sing N N 286 LYS N CA sing N N 287 LYS N H sing N N 288 LYS N H2 sing N N 289 LYS CA C sing N N 290 LYS CA CB sing N N 291 LYS CA HA sing N N 292 LYS C O doub N N 293 LYS C OXT sing N N 294 LYS CB CG sing N N 295 LYS CB HB2 sing N N 296 LYS CB HB3 sing N N 297 LYS CG CD sing N N 298 LYS CG HG2 sing N N 299 LYS CG HG3 sing N N 300 LYS CD CE sing N N 301 LYS CD HD2 sing N N 302 LYS CD HD3 sing N N 303 LYS CE NZ sing N N 304 LYS CE HE2 sing N N 305 LYS CE HE3 sing N N 306 LYS NZ HZ1 sing N N 307 LYS NZ HZ2 sing N N 308 LYS NZ HZ3 sing N N 309 LYS OXT HXT sing N N 310 MET N CA sing N N 311 MET N H sing N N 312 MET N H2 sing N N 313 MET CA C sing N N 314 MET CA CB sing N N 315 MET CA HA sing N N 316 MET C O doub N N 317 MET C OXT sing N N 318 MET CB CG sing N N 319 MET CB HB2 sing N N 320 MET CB HB3 sing N N 321 MET CG SD sing N N 322 MET CG HG2 sing N N 323 MET CG HG3 sing N N 324 MET SD CE sing N N 325 MET CE HE1 sing N N 326 MET CE HE2 sing N N 327 MET CE HE3 sing N N 328 MET OXT HXT sing N N 329 NAG C1 C2 sing N N 330 NAG C1 O1 sing N N 331 NAG C1 O5 sing N N 332 NAG C1 H1 sing N N 333 NAG C2 C3 sing N N 334 NAG C2 N2 sing N N 335 NAG C2 H2 sing N N 336 NAG C3 C4 sing N N 337 NAG C3 O3 sing N N 338 NAG C3 H3 sing N N 339 NAG C4 C5 sing N N 340 NAG C4 O4 sing N N 341 NAG C4 H4 sing N N 342 NAG C5 C6 sing N N 343 NAG C5 O5 sing N N 344 NAG C5 H5 sing N N 345 NAG C6 O6 sing N N 346 NAG C6 H61 sing N N 347 NAG C6 H62 sing N N 348 NAG C7 C8 sing N N 349 NAG C7 N2 sing N N 350 NAG C7 O7 doub N N 351 NAG C8 H81 sing N N 352 NAG C8 H82 sing N N 353 NAG C8 H83 sing N N 354 NAG N2 HN2 sing N N 355 NAG O1 HO1 sing N N 356 NAG O3 HO3 sing N N 357 NAG O4 HO4 sing N N 358 NAG O6 HO6 sing N N 359 PHE N CA sing N N 360 PHE N H sing N N 361 PHE N H2 sing N N 362 PHE CA C sing N N 363 PHE CA CB sing N N 364 PHE CA HA sing N N 365 PHE C O doub N N 366 PHE C OXT sing N N 367 PHE CB CG sing N N 368 PHE CB HB2 sing N N 369 PHE CB HB3 sing N N 370 PHE CG CD1 doub Y N 371 PHE CG CD2 sing Y N 372 PHE CD1 CE1 sing Y N 373 PHE CD1 HD1 sing N N 374 PHE CD2 CE2 doub Y N 375 PHE CD2 HD2 sing N N 376 PHE CE1 CZ doub Y N 377 PHE CE1 HE1 sing N N 378 PHE CE2 CZ sing Y N 379 PHE CE2 HE2 sing N N 380 PHE CZ HZ sing N N 381 PHE OXT HXT sing N N 382 PRO N CA sing N N 383 PRO N CD sing N N 384 PRO N H sing N N 385 PRO CA C sing N N 386 PRO CA CB sing N N 387 PRO CA HA sing N N 388 PRO C O doub N N 389 PRO C OXT sing N N 390 PRO CB CG sing N N 391 PRO CB HB2 sing N N 392 PRO CB HB3 sing N N 393 PRO CG CD sing N N 394 PRO CG HG2 sing N N 395 PRO CG HG3 sing N N 396 PRO CD HD2 sing N N 397 PRO CD HD3 sing N N 398 PRO OXT HXT sing N N 399 SER N CA sing N N 400 SER N H sing N N 401 SER N H2 sing N N 402 SER CA C sing N N 403 SER CA CB sing N N 404 SER CA HA sing N N 405 SER C O doub N N 406 SER C OXT sing N N 407 SER CB OG sing N N 408 SER CB HB2 sing N N 409 SER CB HB3 sing N N 410 SER OG HG sing N N 411 SER OXT HXT sing N N 412 THR N CA sing N N 413 THR N H sing N N 414 THR N H2 sing N N 415 THR CA C sing N N 416 THR CA CB sing N N 417 THR CA HA sing N N 418 THR C O doub N N 419 THR C OXT sing N N 420 THR CB OG1 sing N N 421 THR CB CG2 sing N N 422 THR CB HB sing N N 423 THR OG1 HG1 sing N N 424 THR CG2 HG21 sing N N 425 THR CG2 HG22 sing N N 426 THR CG2 HG23 sing N N 427 THR OXT HXT sing N N 428 TRP N CA sing N N 429 TRP N H sing N N 430 TRP N H2 sing N N 431 TRP CA C sing N N 432 TRP CA CB sing N N 433 TRP CA HA sing N N 434 TRP C O doub N N 435 TRP C OXT sing N N 436 TRP CB CG sing N N 437 TRP CB HB2 sing N N 438 TRP CB HB3 sing N N 439 TRP CG CD1 doub Y N 440 TRP CG CD2 sing Y N 441 TRP CD1 NE1 sing Y N 442 TRP CD1 HD1 sing N N 443 TRP CD2 CE2 doub Y N 444 TRP CD2 CE3 sing Y N 445 TRP NE1 CE2 sing Y N 446 TRP NE1 HE1 sing N N 447 TRP CE2 CZ2 sing Y N 448 TRP CE3 CZ3 doub Y N 449 TRP CE3 HE3 sing N N 450 TRP CZ2 CH2 doub Y N 451 TRP CZ2 HZ2 sing N N 452 TRP CZ3 CH2 sing Y N 453 TRP CZ3 HZ3 sing N N 454 TRP CH2 HH2 sing N N 455 TRP OXT HXT sing N N 456 TYR N CA sing N N 457 TYR N H sing N N 458 TYR N H2 sing N N 459 TYR CA C sing N N 460 TYR CA CB sing N N 461 TYR CA HA sing N N 462 TYR C O doub N N 463 TYR C OXT sing N N 464 TYR CB CG sing N N 465 TYR CB HB2 sing N N 466 TYR CB HB3 sing N N 467 TYR CG CD1 doub Y N 468 TYR CG CD2 sing Y N 469 TYR CD1 CE1 sing Y N 470 TYR CD1 HD1 sing N N 471 TYR CD2 CE2 doub Y N 472 TYR CD2 HD2 sing N N 473 TYR CE1 CZ doub Y N 474 TYR CE1 HE1 sing N N 475 TYR CE2 CZ sing Y N 476 TYR CE2 HE2 sing N N 477 TYR CZ OH sing N N 478 TYR OH HH sing N N 479 TYR OXT HXT sing N N 480 VAL N CA sing N N 481 VAL N H sing N N 482 VAL N H2 sing N N 483 VAL CA C sing N N 484 VAL CA CB sing N N 485 VAL CA HA sing N N 486 VAL C O doub N N 487 VAL C OXT sing N N 488 VAL CB CG1 sing N N 489 VAL CB CG2 sing N N 490 VAL CB HB sing N N 491 VAL CG1 HG11 sing N N 492 VAL CG1 HG12 sing N N 493 VAL CG1 HG13 sing N N 494 VAL CG2 HG21 sing N N 495 VAL CG2 HG22 sing N N 496 VAL CG2 HG23 sing N N 497 VAL OXT HXT sing N N 498 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero H 3 AMU 1 H AMU 1 B AMU 32 n H 3 NAG 2 H NAG 2 B NAG 31 n H 3 AMU 3 H AMU 3 B AMU 26 n H 3 NAG 4 H NAG 4 B NAG 25 n H 3 AMU 5 H AMU 5 B AMU 20 n H 3 NAG 6 H NAG 6 B NAG 19 n H 3 AMU 7 H AMU 7 B AMU 14 n H 3 NAG 8 H NAG 8 B NAG 13 n H 3 AMU 9 H AMU 9 B AMU 8 n H 3 NAG 10 H NAG 10 B NAG 7 n H 3 AMU 11 H AMU 11 B AMU 2 n H 3 NAG 12 H NAG 12 B NAG 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc3 AMU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 MurNAc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpNAcb1-4MurNAc1-4DGlcpNAcb1-4MurNAc1-4DGlcpNAcb1-4MurNAc1-4DGlcpNAcb1-4MurNAc1-4DGlcpNAcb1-4MurNAc1-4DGlcpNAcb1-4MurNAc1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 3 ;WURCS=2.0/2,12,11/[a2122h-1b_1-5_2*NCC/3=O_3*OC^RCO/4=O/3C][a2122h-1b_1-5_2*NCC/3=O]/1-2-1-2-1-2-1-2-1-2-1-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1_j4-k1_k4-l1 ; WURCS PDB2Glycan 1.1.0 3 3 ;[][b-D-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{}}}}}}}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 AMU O4 HO4 sing ? 2 3 3 AMU C1 O1 2 NAG O4 HO4 sing ? 3 3 4 NAG C1 O1 3 AMU O4 HO4 sing ? 4 3 5 AMU C1 O1 4 NAG O4 HO4 sing ? 5 3 6 NAG C1 O1 5 AMU O4 HO4 sing ? 6 3 7 AMU C1 O1 6 NAG O4 HO4 sing ? 7 3 8 NAG C1 O1 7 AMU O4 HO4 sing ? 8 3 9 AMU C1 O1 8 NAG O4 HO4 sing ? 9 3 10 NAG C1 O1 9 AMU O4 HO4 sing ? 10 3 11 AMU C1 O1 10 NAG O4 HO4 sing ? 11 3 12 NAG C1 O1 11 AMU O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 AMU 1 n 3 NAG 2 n 3 AMU 3 n 3 NAG 4 n 3 AMU 5 n 3 NAG 6 n 3 AMU 7 n 3 NAG 8 n 3 AMU 9 n 3 NAG 10 n 3 AMU 11 n 3 NAG 12 n #