HEADER HYDROLASE 17-SEP-14 2MUT TITLE SOLUTION STRUCTURE OF THE F231L MUTANT ERCC1-XPF DIMERIZATION REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA EXCISION REPAIR PROTEIN ERCC-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 220-297; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA REPAIR ENDONUCLEASE XPF; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 834-916; COMPND 11 SYNONYM: DNA EXCISION REPAIR PROTEIN ERCC-4, DNA REPAIR PROTEIN COMPND 12 COMPLEMENTING XP-F CELLS, XERODERMA PIGMENTOSUM GROUP F-COMPLEMENTING COMPND 13 PROTEIN; COMPND 14 EC: 3.1.-.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERCC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: ERCC4, ERCC11, XPF; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS ERCC1-XPF, F231L, NUCLEOTIDE EXCISION REPAIR, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.FARIDOUNNIA,H.WIENK,L.KOVACIC,G.E.FOLKERS,N.G.J.JASPERS,R.KAPTEIN, AUTHOR 2 J.H.J.HOEIJMAKERS,R.BOELENS REVDAT 4 15-MAY-24 2MUT 1 REMARK REVDAT 3 14-JUN-23 2MUT 1 REMARK SEQADV REVDAT 2 26-AUG-15 2MUT 1 JRNL REVDAT 1 24-JUN-15 2MUT 0 JRNL AUTH M.FARIDOUNNIA,H.WIENK,L.KOVACIC,G.E.FOLKERS,N.G.JASPERS, JRNL AUTH 2 R.KAPTEIN,J.H.HOEIJMAKERS,R.BOELENS JRNL TITL THE CEREBRO-OCULO-FACIO-SKELETAL SYNDROME POINT MUTATION JRNL TITL 2 F231L IN THE ERCC1 DNA REPAIR PROTEIN CAUSES DISSOCIATION OF JRNL TITL 3 THE ERCC1-XPF COMPLEX. JRNL REF J.BIOL.CHEM. V. 290 20541 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26085086 JRNL DOI 10.1074/JBC.M114.635169 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000104071. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 250 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 0.4 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN_2, 8 % D2O, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HSQC; TRIPLE RESONANCE; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CYANA, CING REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C HIS A 307 N MET B 822 1.32 REMARK 500 O VAL A 235 HG CYS A 238 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 295 -38.93 72.97 REMARK 500 1 LEU A 300 -73.69 -93.00 REMARK 500 1 HIS A 304 -153.62 -92.67 REMARK 500 1 HIS A 306 -45.66 74.06 REMARK 500 1 ASP B 823 152.54 60.77 REMARK 500 1 LYS B 832 77.45 -111.57 REMARK 500 2 ILE A 213 -76.41 -126.74 REMARK 500 2 TYR A 217 77.57 -158.27 REMARK 500 2 ASN A 218 -171.52 -179.38 REMARK 500 2 LYS A 295 -49.02 73.64 REMARK 500 2 ASP B 823 106.62 61.90 REMARK 500 2 LYS B 904 25.41 -149.83 REMARK 500 3 ARG A 214 -173.22 61.42 REMARK 500 3 ARG A 215 -54.40 71.71 REMARK 500 3 ASN A 218 83.00 85.08 REMARK 500 3 LYS A 295 -36.21 74.38 REMARK 500 3 HIS A 303 -169.12 -114.26 REMARK 500 3 SER B 899 -64.17 66.32 REMARK 500 4 LYS A 295 -32.23 71.06 REMARK 500 4 LEU A 300 -94.04 -134.51 REMARK 500 4 ASP B 823 41.66 -95.90 REMARK 500 5 LYS A 295 -44.16 71.81 REMARK 500 5 LEU A 300 -59.94 -134.85 REMARK 500 5 HIS A 305 -73.19 67.12 REMARK 500 5 HIS A 306 -15.93 -154.12 REMARK 500 5 ASP B 823 -176.13 64.00 REMARK 500 6 LYS A 295 -36.78 74.01 REMARK 500 6 LEU A 300 -72.96 -90.13 REMARK 500 6 HIS A 305 -72.38 -98.94 REMARK 500 6 THR B 826 16.15 57.75 REMARK 500 6 SER B 899 96.16 -49.90 REMARK 500 6 LYS B 900 -144.06 -152.55 REMARK 500 7 ARG A 215 -165.01 65.79 REMARK 500 7 TYR A 217 167.23 69.73 REMARK 500 7 ASN A 218 102.31 71.27 REMARK 500 7 LYS A 295 -36.35 71.33 REMARK 500 7 LEU A 300 -85.71 68.79 REMARK 500 7 HIS A 304 -36.68 -177.25 REMARK 500 8 TYR A 217 -66.24 -139.69 REMARK 500 8 ASN A 218 151.19 69.23 REMARK 500 8 LYS A 295 -44.89 69.38 REMARK 500 8 HIS A 303 71.36 65.70 REMARK 500 8 HIS A 304 -179.96 74.09 REMARK 500 8 LYS B 904 104.75 70.71 REMARK 500 9 LYS A 295 -40.71 71.86 REMARK 500 9 HIS A 303 -168.25 67.17 REMARK 500 10 TYR A 217 102.34 65.14 REMARK 500 10 ASN A 218 -163.95 -108.86 REMARK 500 10 LYS A 295 -41.25 69.24 REMARK 500 10 LEU A 300 -75.33 -90.43 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 ARG A 283 0.09 SIDE CHAIN REMARK 500 18 ARG A 284 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25232 RELATED DB: BMRB DBREF 2MUT A 220 297 UNP P07992 ERCC1_HUMAN 220 297 DBREF 2MUT B 823 905 UNP Q92889 XPF_HUMAN 834 916 SEQADV 2MUT ARG A 212 UNP P07992 EXPRESSION TAG SEQADV 2MUT ILE A 213 UNP P07992 EXPRESSION TAG SEQADV 2MUT ARG A 214 UNP P07992 EXPRESSION TAG SEQADV 2MUT ARG A 215 UNP P07992 EXPRESSION TAG SEQADV 2MUT ARG A 216 UNP P07992 EXPRESSION TAG SEQADV 2MUT TYR A 217 UNP P07992 EXPRESSION TAG SEQADV 2MUT ASN A 218 UNP P07992 EXPRESSION TAG SEQADV 2MUT MET A 219 UNP P07992 EXPRESSION TAG SEQADV 2MUT LEU A 231 UNP P07992 PHE 231 ENGINEERED MUTATION SEQADV 2MUT GLY A 298 UNP P07992 EXPRESSION TAG SEQADV 2MUT GLY A 299 UNP P07992 EXPRESSION TAG SEQADV 2MUT LEU A 300 UNP P07992 EXPRESSION TAG SEQADV 2MUT GLU A 301 UNP P07992 EXPRESSION TAG SEQADV 2MUT HIS A 302 UNP P07992 EXPRESSION TAG SEQADV 2MUT HIS A 303 UNP P07992 EXPRESSION TAG SEQADV 2MUT HIS A 304 UNP P07992 EXPRESSION TAG SEQADV 2MUT HIS A 305 UNP P07992 EXPRESSION TAG SEQADV 2MUT HIS A 306 UNP P07992 EXPRESSION TAG SEQADV 2MUT HIS A 307 UNP P07992 EXPRESSION TAG SEQADV 2MUT MET B 822 UNP Q92889 INITIATING METHIONINE SEQRES 1 A 96 ARG ILE ARG ARG ARG TYR ASN MET ALA ASP LEU LEU MET SEQRES 2 A 96 GLU LYS LEU GLU GLN ASP LEU VAL SER ARG VAL THR GLU SEQRES 3 A 96 CYS LEU THR THR VAL LYS SER VAL ASN LYS THR ASP SER SEQRES 4 A 96 GLN THR LEU LEU THR THR PHE GLY SER LEU GLU GLN LEU SEQRES 5 A 96 ILE ALA ALA SER ARG GLU ASP LEU ALA LEU CYS PRO GLY SEQRES 6 A 96 LEU GLY PRO GLN LYS ALA ARG ARG LEU PHE ASP VAL LEU SEQRES 7 A 96 HIS GLU PRO PHE LEU LYS VAL PRO GLY GLY LEU GLU HIS SEQRES 8 A 96 HIS HIS HIS HIS HIS SEQRES 1 B 84 MET ASP SER GLU THR LEU PRO GLU SER GLU LYS TYR ASN SEQRES 2 B 84 PRO GLY PRO GLN ASP PHE LEU LEU LYS MET PRO GLY VAL SEQRES 3 B 84 ASN ALA LYS ASN CYS ARG SER LEU MET HIS HIS VAL LYS SEQRES 4 B 84 ASN ILE ALA GLU LEU ALA ALA LEU SER GLN ASP GLU LEU SEQRES 5 B 84 THR SER ILE LEU GLY ASN ALA ALA ASN ALA LYS GLN LEU SEQRES 6 B 84 TYR ASP PHE ILE HIS THR SER PHE ALA GLU VAL VAL SER SEQRES 7 B 84 LYS GLY LYS GLY LYS LYS HELIX 1 1 ASN A 218 THR A 241 1 24 HELIX 2 2 ASN A 246 PHE A 257 1 12 HELIX 3 3 SER A 259 ALA A 265 1 7 HELIX 4 4 SER A 267 CYS A 274 1 8 HELIX 5 5 GLY A 278 GLU A 291 1 14 HELIX 6 6 PRO B 828 LYS B 832 5 5 HELIX 7 7 ASN B 834 LYS B 843 1 10 HELIX 8 8 ASN B 848 VAL B 859 1 12 HELIX 9 9 ASN B 861 LEU B 868 1 8 HELIX 10 10 SER B 869 GLY B 878 1 10 HELIX 11 11 ASN B 879 HIS B 891 1 13 HELIX 12 12 SER B 893 SER B 899 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1