HEADER VIRAL PROTEIN 23-SEP-14 2MV4 TITLE SOLUTION STRUCTURE OF MYRISTOYLATED Y28F/Y67F MUTANT OF THE MASON- TITLE 2 PFIZER MONKEY VIRUS MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN P10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-118; COMPND 5 SYNONYM: MPMV_MA_Y28F_Y67F; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; SOURCE 3 ORGANISM_COMMON: MPMV; SOURCE 4 ORGANISM_TAXID: 11855; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GAG, MATRIX PROTEIN, M-PMV, MYRISTOYL SWITCH, MYRISTOYLATION, KEYWDS 2 RETROVIRUS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR M.DOLEZAL,R.HRABAL REVDAT 3 21-DEC-22 2MV4 1 REMARK SEQADV LINK REVDAT 2 30-SEP-15 2MV4 1 JRNL REVDAT 1 01-APR-15 2MV4 0 JRNL AUTH M.DOLEZAL,R.HRABAL,T.RUML,M.RUMLOVA JRNL TITL RESONANCE ASSIGNMENTS OF THE MYRISTOYLATED Y28F/Y67F MUTANT JRNL TITL 2 OF THE MASON-PFIZER MONKEY VIRUS MATRIX PROTEIN. JRNL REF BIOMOL.NMR ASSIGN. V. 9 229 2015 JRNL REFN ISSN 1874-2718 JRNL PMID 25773138 JRNL DOI 10.1007/S12104-014-9580-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, YASARA 13.3.26 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), ELMAR KRIEGER (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE REFINEMENT IN WATER REMARK 4 REMARK 4 2MV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000104082. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.000 REMARK 210 PH : 6.000 REMARK 210 IONIC STRENGTH : 0.600 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N; NA REMARK 210 -MYR] MPMV_MA_Y28F_Y67F, 300.0 REMARK 210 MM NACL, 2.5 MM TCEP, 50.0 MM REMARK 210 SODIUM PHOSPHATE, 95% H2O/5% D2O; REMARK 210 1.0 MM [U-99% 13C; U-99% 15N; REMARK 210 NA-MYR,H] MPMV_MA_Y28F_Y67F, REMARK 210 300.0 MM NACL, 2.5 MM TCEP, 50.0 REMARK 210 MM SODIUM PHOSPHATE, 95% H2O/5% REMARK 210 D2O; 1.0 MM [U-99% 13C; U-99% REMARK 210 15N] MPMV_MA_Y28F_Y67F, 300.0 MM REMARK 210 NACL, 2.5 MM TCEP, 50.0 MM REMARK 210 SODIUM PHOSPHATE, 95% H2O/5% D2O; REMARK 210 1.0 MM [U-99% 13C]-MYR MPMV_MA_ REMARK 210 Y28F_Y67F, 300.0 MM NACL, 2.5 MM REMARK 210 TCEP, 50.0 MM SODIUM PHOSPHATE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D CON; 2D CACO; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HBHA(CBCACO)NH; 3D H(CCCO)NH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC ARO; 2D REMARK 210 (HB)CB(CGCD)HD; 2D (HB)CB(CGCDCE) REMARK 210 HE; 2D (H)CB(CGCC-TOCSY)HAR-PHE; REMARK 210 2D (H)CB(CGCC-TOCSY)HAR-TRP; 2D REMARK 210 (H)CB(CGCC-TOCSY)HAR-TYR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, CCPNMR ANALYSIS REMARK 210 2.3, CYANA 2.1, PSVS 1.5, REMARK 210 PDBSTAT 5.9, AVS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS (CYANA REMARK 210 2.1), DISTANCE GEOMETRY DYNAMICS, REMARK 210 EXPLICIT WATER (YASARA 13.3.26) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 32 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 113 -161.76 -104.24 REMARK 500 1 LEU A 118 166.40 59.21 REMARK 500 1 HIS A 124 -167.66 62.67 REMARK 500 2 ASP A 117 -154.90 51.09 REMARK 500 2 LEU A 118 -138.37 55.04 REMARK 500 2 HIS A 121 2.24 -63.41 REMARK 500 2 HIS A 123 105.66 61.29 REMARK 500 3 THR A 116 38.19 -77.06 REMARK 500 3 ASP A 117 7.12 52.97 REMARK 500 3 GLU A 119 -18.38 64.06 REMARK 500 4 HIS A 120 -49.33 -131.18 REMARK 500 4 HIS A 124 42.34 -79.91 REMARK 500 5 SER A 114 0.49 -68.27 REMARK 500 6 THR A 116 31.50 -91.89 REMARK 500 6 ASP A 117 42.65 -80.83 REMARK 500 7 ILE A 51 79.70 -112.79 REMARK 500 7 ASP A 117 -137.68 -102.07 REMARK 500 7 HIS A 124 -156.12 60.94 REMARK 500 8 ASN A 113 29.41 48.41 REMARK 500 9 GLU A 119 -48.92 -155.30 REMARK 500 9 HIS A 122 168.65 68.44 REMARK 500 9 HIS A 124 -125.53 52.64 REMARK 500 10 HIS A 124 -164.63 57.81 REMARK 500 11 GLU A 119 72.90 -69.82 REMARK 500 12 HIS A 120 -170.12 60.90 REMARK 500 13 HIS A 121 49.06 -86.78 REMARK 500 14 ASN A 113 -157.95 51.00 REMARK 500 14 LEU A 118 -138.35 53.35 REMARK 500 14 HIS A 120 55.72 -142.05 REMARK 500 14 HIS A 122 -64.50 -170.27 REMARK 500 15 SER A 114 -166.05 60.11 REMARK 500 15 GLU A 119 -159.66 -106.62 REMARK 500 15 HIS A 120 -42.25 67.02 REMARK 500 15 HIS A 121 91.45 -66.02 REMARK 500 16 ASN A 113 -163.64 -103.55 REMARK 500 16 SER A 114 2.29 58.63 REMARK 500 16 HIS A 124 18.32 57.46 REMARK 500 17 LEU A 118 119.29 58.61 REMARK 500 17 HIS A 120 -154.90 57.22 REMARK 500 18 SER A 114 157.36 69.05 REMARK 500 18 HIS A 124 -78.93 -140.03 REMARK 500 19 THR A 116 -171.60 56.39 REMARK 500 20 LEU A 118 135.81 63.96 REMARK 500 20 HIS A 120 50.60 -115.26 REMARK 500 20 HIS A 122 -138.29 55.33 REMARK 500 20 HIS A 124 -140.94 62.53 REMARK 500 21 SER A 114 90.82 -62.93 REMARK 500 21 GLU A 119 -24.96 66.07 REMARK 500 22 THR A 116 143.74 66.30 REMARK 500 22 HIS A 120 36.39 -152.01 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25087 RELATED DB: BMRB DBREF 2MV4 A 2 118 UNP P07567 GAG_MPMV 2 118 SEQADV 2MV4 MYR A 1 UNP P07567 MODIFIED RESIDUE SEQADV 2MV4 PHE A 28 UNP P07567 TYR 28 ENGINEERED MUTATION SEQADV 2MV4 PHE A 67 UNP P07567 TYR 67 ENGINEERED MUTATION SEQADV 2MV4 GLU A 119 UNP P07567 EXPRESSION TAG SEQADV 2MV4 HIS A 120 UNP P07567 EXPRESSION TAG SEQADV 2MV4 HIS A 121 UNP P07567 EXPRESSION TAG SEQADV 2MV4 HIS A 122 UNP P07567 EXPRESSION TAG SEQADV 2MV4 HIS A 123 UNP P07567 EXPRESSION TAG SEQADV 2MV4 HIS A 124 UNP P07567 EXPRESSION TAG SEQADV 2MV4 HIS A 125 UNP P07567 EXPRESSION TAG SEQRES 1 A 125 MYR GLY GLN GLU LEU SER GLN HIS GLU ARG TYR VAL GLU SEQRES 2 A 125 GLN LEU LYS GLN ALA LEU LYS THR ARG GLY VAL LYS VAL SEQRES 3 A 125 LYS PHE ALA ASP LEU LEU LYS PHE PHE ASP PHE VAL LYS SEQRES 4 A 125 ASP THR CYS PRO TRP PHE PRO GLN GLU GLY THR ILE ASP SEQRES 5 A 125 ILE LYS ARG TRP ARG ARG VAL GLY ASP CYS PHE GLN ASP SEQRES 6 A 125 TYR PHE ASN THR PHE GLY PRO GLU LYS VAL PRO VAL THR SEQRES 7 A 125 ALA PHE SER TYR TRP ASN LEU ILE LYS GLU LEU ILE ASP SEQRES 8 A 125 LYS LYS GLU VAL ASN PRO GLN VAL MET ALA ALA VAL ALA SEQRES 9 A 125 GLN THR GLU GLU ILE LEU LYS SER ASN SER GLN THR ASP SEQRES 10 A 125 LEU GLU HIS HIS HIS HIS HIS HIS HET MYR A 1 42 HETNAM MYR MYRISTIC ACID FORMUL 1 MYR C14 H28 O2 HELIX 1 1 GLY A 2 LEU A 5 1 4 HELIX 2 2 GLU A 9 THR A 21 1 13 HELIX 3 3 PHE A 28 THR A 41 1 14 HELIX 4 4 PHE A 45 GLU A 48 1 4 HELIX 5 5 ILE A 53 PHE A 70 1 18 HELIX 6 6 VAL A 77 ASP A 91 1 15 HELIX 7 7 LYS A 93 VAL A 95 5 3 HELIX 8 8 PRO A 97 SER A 112 1 16 LINK C1 MYR A 1 N GLY A 2 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C1 MYR A 1 0.478 1.064 1.264 1.00 25.00 C HETATM 2 O1 MYR A 1 -0.703 1.151 1.502 1.00 25.00 O HETATM 3 C2 MYR A 1 1.026 0.194 0.149 1.00 25.00 C HETATM 4 C3 MYR A 1 0.411 -1.238 0.218 1.00 25.00 C HETATM 5 C4 MYR A 1 0.927 -2.001 1.467 1.00 25.00 C HETATM 6 C5 MYR A 1 0.217 -3.356 1.643 1.00 25.00 C HETATM 7 C6 MYR A 1 0.637 -4.033 2.970 1.00 25.00 C HETATM 8 C7 MYR A 1 -0.294 -5.232 3.313 1.00 25.00 C HETATM 9 C8 MYR A 1 -0.126 -5.740 4.778 1.00 25.00 C HETATM 10 C9 MYR A 1 -0.742 -4.757 5.822 1.00 25.00 C HETATM 11 C10 MYR A 1 -0.810 -5.328 7.266 1.00 25.00 C HETATM 12 C11 MYR A 1 -1.917 -6.414 7.463 1.00 25.00 C HETATM 13 C12 MYR A 1 -3.110 -5.953 8.361 1.00 25.00 C HETATM 14 C13 MYR A 1 -4.217 -5.210 7.563 1.00 25.00 C HETATM 15 C14 MYR A 1 -5.349 -4.722 8.492 1.00 25.00 C HETATM 16 H21 MYR A 1 0.787 0.648 -0.812 1.00 25.00 H HETATM 17 H22 MYR A 1 2.116 0.138 0.219 1.00 25.00 H HETATM 18 H31 MYR A 1 -0.680 -1.159 0.253 1.00 25.00 H HETATM 19 H32 MYR A 1 0.657 -1.796 -0.686 1.00 25.00 H HETATM 20 H41 MYR A 1 2.002 -2.160 1.385 1.00 25.00 H HETATM 21 H42 MYR A 1 0.755 -1.391 2.359 1.00 25.00 H HETATM 22 H51 MYR A 1 -0.863 -3.188 1.648 1.00 25.00 H HETATM 23 H52 MYR A 1 0.451 -4.013 0.801 1.00 25.00 H HETATM 24 H61 MYR A 1 1.670 -4.383 2.892 1.00 25.00 H HETATM 25 H62 MYR A 1 0.601 -3.293 3.774 1.00 25.00 H HETATM 26 H71 MYR A 1 -1.339 -4.953 3.151 1.00 25.00 H HETATM 27 H72 MYR A 1 -0.076 -6.052 2.626 1.00 25.00 H HETATM 28 H81 MYR A 1 -0.623 -6.706 4.864 1.00 25.00 H HETATM 29 H82 MYR A 1 0.932 -5.900 4.994 1.00 25.00 H HETATM 30 H91 MYR A 1 -1.741 -4.449 5.506 1.00 25.00 H HETATM 31 H92 MYR A 1 -0.123 -3.862 5.848 1.00 25.00 H HETATM 32 H101 MYR A 1 -0.971 -4.503 7.963 1.00 25.00 H HETATM 33 H102 MYR A 1 0.153 -5.756 7.527 1.00 25.00 H HETATM 34 H111 MYR A 1 -2.293 -6.761 6.500 1.00 25.00 H HETATM 35 H112 MYR A 1 -1.448 -7.277 7.931 1.00 25.00 H HETATM 36 H121 MYR A 1 -3.552 -6.837 8.829 1.00 50.00 H HETATM 37 H122 MYR A 1 -2.744 -5.314 9.169 1.00 50.00 H HETATM 38 H131 MYR A 1 -3.791 -4.350 7.041 1.00 25.00 H HETATM 39 H132 MYR A 1 -4.638 -5.878 6.807 1.00 25.00 H HETATM 40 H141 MYR A 1 -6.127 -4.232 7.906 1.00 25.00 H HETATM 41 H142 MYR A 1 -5.800 -5.560 9.028 1.00 25.00 H HETATM 42 H143 MYR A 1 -4.967 -4.004 9.223 1.00 25.00 H