HEADER HORMONE 02-OCT-14 2MVD TITLE SOLUTION STRUCTURE OF [GLNB22]-INSULIN MUTANT AT PH 1.9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN A CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 90-110; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INSULIN B CHAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 25-54; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS INSULIN, MODY, HORMONE EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR R.HEXNEROVA,K.KRIZKOVA,L.MALETINSKA,J.JIRACEK,A.M.BRZOZOWSKI, AUTHOR 2 L.ZAKOVA,V.VEVERKA REVDAT 2 14-JUN-23 2MVD 1 REMARK SEQADV REVDAT 1 10-DEC-14 2MVD 0 JRNL AUTH K.KRIZKOVA,V.VEVERKA,L.MALETINSKA,R.HEXNEROVA, JRNL AUTH 2 A.M.BRZOZOWSKI,J.JIRACEK,L.ZAKOVA JRNL TITL STRUCTURAL AND FUNCTIONAL STUDY OF THE GLNB22-INSULIN MUTANT JRNL TITL 2 RESPONSIBLE FOR MATURITY-ONSET DIABETES OF THE YOUNG. JRNL REF PLOS ONE V. 9 12883 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25423173 JRNL DOI 10.1371/JOURNAL.PONE.0112883 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, YASARA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104091. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 1.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM PROTEIN_1, 0.2 MM REMARK 210 PROTEIN_2, 20 % [U-99% 2H] REMARK 210 ACETIC ACID, 5 % [U-99% 2H] D2O, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 GLU A 4 CD GLU A 4 OE1 -0.078 REMARK 500 4 GLU A 17 CD GLU A 17 OE1 -0.069 REMARK 500 5 GLU B 51 CD GLU B 51 OE1 -0.071 REMARK 500 6 ASN A 21 C ASN A 21 OXT 0.123 REMARK 500 7 GLU B 43 CD GLU B 43 OE1 -0.072 REMARK 500 8 GLU B 43 CD GLU B 43 OE1 -0.072 REMARK 500 8 THR B 60 C THR B 60 OXT 0.123 REMARK 500 9 GLU A 17 CD GLU A 17 OE1 -0.068 REMARK 500 10 GLU A 4 CD GLU A 4 OE1 -0.067 REMARK 500 10 GLU B 51 CD GLU B 51 OE1 -0.077 REMARK 500 11 GLU A 4 CD GLU A 4 OE1 -0.073 REMARK 500 12 GLU A 4 CD GLU A 4 OE1 -0.085 REMARK 500 12 GLU A 17 CD GLU A 17 OE1 -0.077 REMARK 500 12 GLU B 43 CD GLU B 43 OE1 -0.070 REMARK 500 13 GLU A 17 CD GLU A 17 OE1 -0.082 REMARK 500 14 GLU A 4 CD GLU A 4 OE1 -0.097 REMARK 500 14 GLU B 43 CD GLU B 43 OE1 -0.075 REMARK 500 15 GLU A 4 CD GLU A 4 OE1 -0.066 REMARK 500 15 GLU B 43 CD GLU B 43 OE1 -0.069 REMARK 500 16 TYR A 19 CD1 TYR A 19 CE1 0.096 REMARK 500 16 GLU B 43 CD GLU B 43 OE1 -0.074 REMARK 500 16 GLU B 51 CD GLU B 51 OE2 0.069 REMARK 500 17 GLU A 17 CD GLU A 17 OE1 -0.068 REMARK 500 18 GLU A 17 CD GLU A 17 OE1 -0.074 REMARK 500 19 GLU A 17 CD GLU A 17 OE1 -0.093 REMARK 500 20 GLU A 4 CD GLU A 4 OE1 -0.073 REMARK 500 20 GLU B 51 CD GLU B 51 OE1 -0.073 REMARK 500 21 GLU A 4 CD GLU A 4 OE1 -0.082 REMARK 500 22 GLU A 4 CD GLU A 4 OE1 -0.069 REMARK 500 22 GLU A 17 CD GLU A 17 OE1 -0.077 REMARK 500 23 GLU A 4 CD GLU A 4 OE1 -0.077 REMARK 500 23 GLU A 17 CD GLU A 17 OE1 -0.076 REMARK 500 25 GLU A 4 CD GLU A 4 OE2 0.070 REMARK 500 26 GLU A 4 CD GLU A 4 OE1 -0.070 REMARK 500 26 GLU B 51 CD GLU B 51 OE1 -0.067 REMARK 500 27 GLU A 4 CD GLU A 4 OE1 -0.077 REMARK 500 27 GLU B 43 CD GLU B 43 OE1 -0.070 REMARK 500 27 GLU B 51 CD GLU B 51 OE1 -0.068 REMARK 500 28 GLU A 17 CD GLU A 17 OE1 -0.068 REMARK 500 28 GLU B 43 CD GLU B 43 OE1 -0.066 REMARK 500 30 GLU A 17 CD GLU A 17 OE1 -0.080 REMARK 500 31 GLU B 43 CD GLU B 43 OE1 -0.069 REMARK 500 31 GLU B 51 CD GLU B 51 OE1 -0.068 REMARK 500 32 GLY A 1 N GLY A 1 CA 0.094 REMARK 500 32 GLU B 51 CD GLU B 51 OE1 -0.071 REMARK 500 33 GLU B 43 CD GLU B 43 OE2 0.071 REMARK 500 34 GLU B 51 CD GLU B 51 OE1 -0.067 REMARK 500 36 GLU A 17 CD GLU A 17 OE1 -0.072 REMARK 500 36 GLU A 17 CD GLU A 17 OE2 0.066 REMARK 500 37 GLU A 4 CD GLU A 4 OE1 -0.087 REMARK 500 REMARK 500 THIS ENTRY HAS 57 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU B 36 86.47 45.22 REMARK 500 1 GLU B 51 167.64 64.48 REMARK 500 1 PHE B 54 123.66 68.78 REMARK 500 3 CYS B 37 -159.83 -126.99 REMARK 500 3 SER B 39 -49.55 65.04 REMARK 500 3 GLN B 52 24.49 -144.26 REMARK 500 3 PHE B 54 130.81 67.45 REMARK 500 3 TYR B 56 116.42 56.56 REMARK 500 4 GLN B 52 40.65 -75.22 REMARK 500 4 PHE B 54 125.38 64.28 REMARK 500 5 CYS B 49 -7.88 -162.77 REMARK 500 7 CYS A 7 37.51 -82.17 REMARK 500 7 THR A 8 -72.69 -125.91 REMARK 500 7 SER A 9 41.09 -142.74 REMARK 500 7 ILE A 10 107.60 68.33 REMARK 500 7 VAL B 32 55.03 -98.30 REMARK 500 7 ASN B 33 35.18 -76.04 REMARK 500 7 GLN B 34 170.96 60.32 REMARK 500 7 CYS B 37 -71.59 -140.04 REMARK 500 7 GLN B 52 40.56 -167.66 REMARK 500 8 THR A 8 -54.96 -146.49 REMARK 500 8 ILE A 10 84.34 62.64 REMARK 500 8 CYS B 49 20.54 -151.40 REMARK 500 9 CYS A 11 86.81 54.20 REMARK 500 9 CYS B 37 -58.98 -139.87 REMARK 500 9 GLN B 52 48.81 -87.14 REMARK 500 9 PHE B 54 -20.67 68.07 REMARK 500 10 LYS B 59 44.55 -148.76 REMARK 500 11 TYR B 56 164.07 60.99 REMARK 500 12 THR A 8 -5.94 -146.44 REMARK 500 13 SER A 9 -153.57 51.50 REMARK 500 13 CYS B 37 -146.18 -126.47 REMARK 500 13 SER B 39 -51.89 63.80 REMARK 500 13 GLN B 52 -32.25 -144.78 REMARK 500 14 CYS A 7 40.19 -88.41 REMARK 500 14 THR A 8 -91.13 -133.29 REMARK 500 14 CYS B 37 -144.37 -129.27 REMARK 500 14 SER B 39 -61.34 63.94 REMARK 500 15 CYS A 20 -162.58 -116.26 REMARK 500 15 SER B 39 -32.64 60.21 REMARK 500 15 TYR B 56 139.53 59.27 REMARK 500 16 CYS A 20 50.90 -93.99 REMARK 500 16 CYS B 37 -43.61 -140.81 REMARK 500 17 SER B 39 -43.68 61.55 REMARK 500 18 THR A 8 -40.87 -153.29 REMARK 500 18 SER A 9 36.83 -146.90 REMARK 500 18 ILE A 10 76.43 56.59 REMARK 500 18 CYS A 20 40.24 -107.41 REMARK 500 18 PHE B 54 -138.74 -141.53 REMARK 500 19 CYS B 37 -54.94 -131.06 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MVC RELATED DB: PDB REMARK 900 RELATED ID: 25261 RELATED DB: BMRB DBREF 2MVD A 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 2MVD B 31 60 UNP P01308 INS_HUMAN 25 54 SEQADV 2MVD GLN B 52 UNP P01308 ARG 46 ENGINEERED MUTATION SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 B 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 30 ALA LEU TYR LEU VAL CYS GLY GLU GLN GLY PHE PHE TYR SEQRES 3 B 30 THR PRO LYS THR HELIX 1 1 GLY A 1 SER A 9 1 9 HELIX 2 2 SER A 12 TYR A 19 1 8 HELIX 3 3 GLY B 38 GLY B 50 1 13 SSBOND 1 CYS A 6 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 7 CYS B 37 1555 1555 2.05 SSBOND 3 CYS A 20 CYS B 49 1555 1555 2.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1