HEADER RIBOSOMAL PROTEIN 02-OCT-14 2MVF TITLE STRUCTURAL INSIGHT INTO AN ESSENTIAL ASSEMBLY FACTOR NETWORK ON THE TITLE 2 PRE-RIBOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 5 GENE: CTHT_0009080; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS RIBOSOME BIOGENESIS, RIBOSOMAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.LEE,J.BASSLER,H.PATERNOGA,I.HOLDERMANN,M.THOMAS,S.GRANNEMAN, AUTHOR 2 C.BARRIO-GARCIA,A.NYARKO,G.STIER,S.A.CLARK,D.SCHRAIVOGEL,M.KALLAS, AUTHOR 3 R.BECKMANN,D.TOLLERVEY,E.BARBAR,I.SINNING,E.HURT REVDAT 5 15-MAY-24 2MVF 1 REMARK REVDAT 4 14-JUN-23 2MVF 1 REMARK REVDAT 3 04-FEB-15 2MVF 1 AUTHOR REVDAT 2 10-DEC-14 2MVF 1 JRNL REVDAT 1 03-DEC-14 2MVF 0 JRNL AUTH J.BALER,H.PATERNOGA,I.HOLDERMANN,M.THOMS,S.GRANNEMAN, JRNL AUTH 2 C.BARRIO-GARCIA,A.NYARKO,G.STIER,S.A.CLARK,D.SCHRAIVOGEL, JRNL AUTH 3 M.KALLAS,R.BECKMANN,D.TOLLERVEY,E.BARBAR,I.SINNING,E.HURT JRNL TITL A NETWORK OF ASSEMBLY FACTORS IS INVOLVED IN REMODELING RRNA JRNL TITL 2 ELEMENTS DURING PRERIBOSOME MATURATION. JRNL REF J.CELL BIOL. V. 207 481 2014 JRNL REFN ISSN 0021-9525 JRNL PMID 25404745 JRNL DOI 10.1083/JCB.201408111 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104093. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 % D2O, 10 MM TRIS, 90 % H2O, REMARK 210 5 MM SODIUM CHLORIDE, 1 UM DSS, REMARK 210 2 MM TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 174 -81.21 -81.29 REMARK 500 1 MET A 175 92.45 -160.86 REMARK 500 1 ASN A 206 84.41 58.18 REMARK 500 1 SER A 226 -34.06 -158.77 REMARK 500 1 VAL A 231 72.38 48.91 REMARK 500 1 SER A 234 9.79 59.86 REMARK 500 1 TRP A 239 146.91 -175.13 REMARK 500 2 PHE A 171 -54.93 71.74 REMARK 500 2 LYS A 180 34.71 -97.39 REMARK 500 2 SER A 205 22.75 -154.74 REMARK 500 2 VAL A 225 -56.12 -175.03 REMARK 500 2 SER A 226 -56.16 72.76 REMARK 500 2 THR A 246 76.29 -119.42 REMARK 500 3 MET A 175 -37.91 -163.05 REMARK 500 3 SER A 226 -26.39 -175.77 REMARK 500 3 ALA A 233 98.95 -161.64 REMARK 500 3 SER A 234 -2.61 65.26 REMARK 500 4 MET A 175 25.32 -154.63 REMARK 500 4 THR A 210 -34.10 -150.38 REMARK 500 4 SER A 226 -32.59 -160.02 REMARK 500 4 THR A 232 -83.80 -85.70 REMARK 500 4 ALA A 233 9.52 -178.53 REMARK 500 4 SER A 234 14.68 -151.33 REMARK 500 5 ARG A 170 167.56 70.06 REMARK 500 5 MET A 175 17.12 -174.93 REMARK 500 5 SER A 205 88.24 -156.05 REMARK 500 5 SER A 226 -13.63 -158.38 REMARK 500 5 ALA A 233 27.08 -143.50 REMARK 500 6 ARG A 170 69.32 60.07 REMARK 500 6 MET A 175 44.00 -168.89 REMARK 500 6 SER A 205 -92.58 -109.01 REMARK 500 6 LEU A 212 126.19 83.08 REMARK 500 6 ILE A 230 -74.34 62.20 REMARK 500 6 VAL A 231 77.67 57.11 REMARK 500 6 ALA A 233 110.36 -161.37 REMARK 500 6 SER A 234 13.23 58.39 REMARK 500 7 ARG A 173 79.11 66.65 REMARK 500 7 MET A 175 20.60 -146.13 REMARK 500 7 SER A 226 -50.87 -129.84 REMARK 500 7 THR A 232 -86.24 -89.27 REMARK 500 7 ALA A 233 82.01 -150.20 REMARK 500 7 ASN A 251 -60.15 -105.70 REMARK 500 8 MET A 175 29.77 -178.20 REMARK 500 8 ASN A 206 75.75 52.84 REMARK 500 8 THR A 210 141.16 176.87 REMARK 500 8 GLN A 211 -58.64 -142.55 REMARK 500 8 SER A 226 -16.00 -169.37 REMARK 500 8 THR A 232 -70.43 -117.05 REMARK 500 8 ALA A 233 97.35 -169.31 REMARK 500 9 MET A 175 -48.50 -179.32 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25265 RELATED DB: BMRB DBREF 2MVF A 168 261 UNP G0S081 G0S081_CHATD 168 261 SEQRES 1 A 94 TYR GLU ARG PHE ILE ARG PRO MET GLY LEU ARG TYR LYS SEQRES 2 A 94 LYS ALA ASN VAL THR HIS PRO THR LEU ASN VAL THR VAL SEQRES 3 A 94 GLN LEU PRO ILE LEU SER VAL LYS LYS ASN PRO SER ASN SEQRES 4 A 94 PRO LEU TYR THR GLN LEU GLY VAL LEU THR LYS GLY THR SEQRES 5 A 94 ILE ILE GLU VAL ASN VAL SER ASP LEU GLY ILE VAL THR SEQRES 6 A 94 ALA SER GLY LYS ILE ALA TRP GLY ARG TYR ALA GLN ILE SEQRES 7 A 94 THR ASN ASN PRO GLU ASN ASP GLY CYS VAL ASN ALA VAL SEQRES 8 A 94 LEU LEU VAL SHEET 1 A 6 VAL A 191 PRO A 196 0 SHEET 2 A 6 LYS A 181 HIS A 186 -1 N HIS A 186 O VAL A 191 SHEET 3 A 6 VAL A 255 LEU A 259 1 O ALA A 257 N ASN A 183 SHEET 4 A 6 TRP A 239 ASN A 247 -1 N THR A 246 O ASN A 256 SHEET 5 A 6 THR A 219 VAL A 225 -1 N VAL A 223 O ARG A 241 SHEET 6 A 6 SER A 199 LYS A 201 -1 N LYS A 201 O ILE A 220 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1