HEADER SUGAR BINDING PROTEIN/ANTIVIRAL PROTEIN 10-NOV-14 2MWH TITLE NMR SOLUTION STRUCTURE OF LIGAND-FREE OAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-HIV LECTIN OAA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANKTOTHRIX AGARDHII; SOURCE 3 ORGANISM_TAXID: 1160; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET26B KEYWDS PROTEIN BINDING, SUGAR BINDING PROTEIN-ANTIVIRAL PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.LEE,M.G.CARNEIRO,L.M.KOHARUDIN,C.GRIESINGER,A.M.GRONENBORN,D.BAN, AUTHOR 2 T.SABO,P.TRIGO-MOURINO,A.MAZUR REVDAT 4 14-JUN-23 2MWH 1 REMARK REVDAT 3 10-JUN-15 2MWH 1 JRNL REVDAT 2 27-MAY-15 2MWH 1 JRNL REVDAT 1 22-APR-15 2MWH 0 JRNL AUTH M.G.CARNEIRO,L.M.KOHARUDIN,D.BAN,T.M.SABO,P.TRIGO-MOURINO, JRNL AUTH 2 A.MAZUR,C.GRIESINGER,A.M.GRONENBORN,D.LEE JRNL TITL SAMPLING OF GLYCAN-BOUND CONFORMERS BY THE ANTI-HIV LECTIN JRNL TITL 2 OSCILLATORIA AGARDHII AGGLUTININ IN THE ABSENCE OF SUGAR. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 6462 2015 JRNL REFN ISSN 1433-7851 JRNL PMID 25873445 JRNL DOI 10.1002/ANIE.201500213 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000104130. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500 UM [U-100% 15N] OAA, 20 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 ACETATE, 3 MM SODIUM AZIDE, 5 % REMARK 210 W/W (C8E5/WATER) N- REMARK 210 OCTYLPENTAOXYETHYLENE, 0.87 REMARK 210 MOLAR RATIO C8E5/OCTANOL OCTANOL, REMARK 210 90% H2O/10% D2O; 2 MM [U-100% REMARK 210 13C; U-100% 15N] OAA, 20 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 ACETATE, 3 MM SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O; 2 MM [U-100% 13C; U- REMARK 210 100% 15N] OAA, 20 MM SODIUM REMARK 210 CHLORIDE, 20 MM SODIUM ACETATE, REMARK 210 3 MM SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCO; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D 1H-15N REMARK 210 IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 27 21.62 -74.05 REMARK 500 1 SER A 29 -79.67 72.57 REMARK 500 1 ASP A 42 -152.91 -104.71 REMARK 500 1 ASP A 43 40.27 -74.81 REMARK 500 2 ASP A 42 -161.36 -102.27 REMARK 500 2 ASP A 43 47.79 -84.12 REMARK 500 3 SER A 29 -42.13 74.16 REMARK 500 3 ASP A 42 -150.20 -132.91 REMARK 500 3 ASP A 43 34.89 -75.81 REMARK 500 3 GLU A 96 -55.84 71.29 REMARK 500 4 ALA A 54 109.14 -58.06 REMARK 500 4 ASN A 68 -71.32 -146.01 REMARK 500 5 ASP A 42 -161.55 -105.18 REMARK 500 5 ASP A 43 47.98 -76.17 REMARK 500 5 ASN A 68 -81.07 -133.49 REMARK 500 6 GLN A 31 91.26 -163.06 REMARK 500 6 ASP A 42 -149.68 -102.24 REMARK 500 6 ASP A 43 38.19 -71.96 REMARK 500 6 ASP A 110 32.76 -92.47 REMARK 500 7 SER A 27 -55.77 -134.63 REMARK 500 7 ASP A 109 -153.61 -91.91 REMARK 500 7 ALA A 121 45.38 -66.47 REMARK 500 8 ASP A 42 -155.16 -137.33 REMARK 500 8 ASP A 43 42.12 -79.40 REMARK 500 8 ASN A 69 -1.72 68.90 REMARK 500 8 ALA A 82 147.22 75.78 REMARK 500 8 ASN A 99 133.72 74.62 REMARK 500 8 ASP A 110 10.42 81.94 REMARK 500 9 ASP A 42 -154.69 -139.28 REMARK 500 9 ASP A 43 38.25 -73.25 REMARK 500 9 ASN A 68 -150.67 -131.41 REMARK 500 9 ASP A 80 -43.47 92.24 REMARK 500 9 ASP A 109 -151.29 -117.25 REMARK 500 10 ASN A 69 5.73 59.65 REMARK 500 10 GLU A 96 -81.67 69.44 REMARK 500 11 TRP A 10 13.64 -145.60 REMARK 500 11 ASP A 42 -156.01 -127.46 REMARK 500 11 ASP A 43 38.72 -76.72 REMARK 500 11 ASP A 80 -28.63 81.28 REMARK 500 11 SER A 94 -34.95 73.44 REMARK 500 11 ASP A 110 39.53 -89.65 REMARK 500 11 GLU A 123 -69.14 -169.80 REMARK 500 12 SER A 13 -6.46 59.17 REMARK 500 12 ARG A 28 108.91 -24.74 REMARK 500 12 SER A 29 -62.36 -102.88 REMARK 500 12 ASP A 42 -153.98 -141.83 REMARK 500 12 ASP A 43 44.07 -78.28 REMARK 500 12 ASN A 69 -9.38 76.48 REMARK 500 12 GLU A 96 -74.51 65.36 REMARK 500 12 ASP A 109 34.59 -92.34 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25324 RELATED DB: BMRB DBREF 2MWH A 2 133 PDB 2MWH 2MWH 2 133 SEQRES 1 A 132 ALA LEU TYR ASN VAL GLU ASN GLN TRP GLY GLY SER SER SEQRES 2 A 132 ALA PRO TRP ASN GLU GLY GLY GLN TRP GLU ILE GLY SER SEQRES 3 A 132 ARG SER ASP GLN ASN VAL VAL ALA ILE ASN VAL GLU SER SEQRES 4 A 132 GLY ASP ASP GLY GLN THR LEU ASN GLY THR MET THR TYR SEQRES 5 A 132 ALA GLY GLU GLY PRO ILE GLY PHE ARG ALA THR LEU LEU SEQRES 6 A 132 GLY ASN ASN SER TYR GLU VAL GLU ASN GLN TRP GLY GLY SEQRES 7 A 132 ASP SER ALA PRO TRP HIS SER GLY GLY ASN TRP ILE LEU SEQRES 8 A 132 GLY SER ARG GLU ASN GLN ASN VAL VAL ALA ILE ASN VAL SEQRES 9 A 132 GLU SER GLY ASP ASP GLY GLN THR LEU ASN GLY THR MET SEQRES 10 A 132 THR TYR ALA GLY GLU GLY PRO ILE GLY PHE LYS GLY THR SEQRES 11 A 132 LEU THR SHEET 1 A11 LEU A 3 GLN A 9 0 SHEET 2 A11 ASN A 18 GLU A 24 -1 O TRP A 23 N TYR A 4 SHEET 3 A11 TRP A 84 ILE A 91 -1 O ILE A 91 N GLU A 24 SHEET 4 A11 SER A 70 GLN A 76 -1 N TYR A 71 O TRP A 90 SHEET 5 A11 PRO A 58 LEU A 65 -1 N ARG A 62 O GLU A 74 SHEET 6 A11 THR A 46 TYR A 53 -1 N MET A 51 O ILE A 59 SHEET 7 A11 VAL A 33 SER A 40 -1 N ALA A 35 O THR A 52 SHEET 8 A11 VAL A 100 GLU A 106 -1 O VAL A 105 N ILE A 36 SHEET 9 A11 THR A 113 TYR A 120 -1 O THR A 117 N ASN A 104 SHEET 10 A11 ILE A 126 LEU A 132 -1 O GLY A 130 N LEU A 114 SHEET 11 A11 LEU A 3 GLN A 9 -1 N ASN A 5 O THR A 131 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1