HEADER TRANSFERASE 06-DEC-14 2MX1 TITLE STRUCTURE OF THE E. COLI THREONYLCARBAMOYL-AMP SYNTHASE TSAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONYLCARBAMOYL-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TC-AMP SYNTHASE, L-THREONYLCARBAMOYLADENYLATE SYNTHASE, COMPND 5 RIBOSOME MATURATION FACTOR TSAC, T(6)A37 THREONYLCARBAMOYLADENOSINE COMPND 6 BIOSYNTHESIS PROTEIN TSAC, TRNA THREONYLCARBAMOYLADENOSINE COMPND 7 BIOSYNTHESIS PROTEIN TSAC; COMPND 8 EC: 2.7.7.87; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B3282, JW3243, RIMN, TSAC, YRDC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.A.HARRIS,B.G.BOBAY,K.L.SARACHAN,A.F.SIMS,Y.BILBILLE,C.DEUTSCH, AUTHOR 2 D.IWATA-REUYL,P.F.AGRIS REVDAT 4 14-JUN-23 2MX1 1 REMARK REVDAT 3 02-SEP-15 2MX1 1 JRNL REVDAT 2 29-JUL-15 2MX1 1 JRNL REVDAT 1 17-JUN-15 2MX1 0 JRNL AUTH K.A.HARRIS,B.G.BOBAY,K.L.SARACHAN,A.F.SIMS,Y.BILBILLE, JRNL AUTH 2 C.DEUTSCH,D.IWATA-REUYL,P.F.AGRIS JRNL TITL NMR-BASED STRUCTURAL ANALYSIS OF THREONYLCARBAMOYL-AMP JRNL TITL 2 SYNTHASE AND ITS SUBSTRATE INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 290 20032 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26060251 JRNL DOI 10.1074/JBC.M114.631242 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000104150. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 RECOMBINANT TSAC PROTEIN, 10 % REMARK 210 [U-100% 2H] D2O, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 RECOMBINANT TSAC PROTEIN, 10 % REMARK 210 [U-100% 2H] D2O, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 12 MG/ML PF1 REMARK 210 BACTERIOPHAGE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 15N TOCSY-HSQC; 1H- REMARK 210 15N HSQC-IPAP; 1H-15N TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 125 H GLN A 129 1.50 REMARK 500 O ASP A 15 H GLU A 19 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 20 88.11 58.14 REMARK 500 1 ARG A 21 -136.78 -161.04 REMARK 500 1 GLU A 28 20.10 -77.66 REMARK 500 1 ALA A 29 -69.26 -160.21 REMARK 500 1 PRO A 37 170.10 -36.79 REMARK 500 1 GLU A 48 -85.23 -64.11 REMARK 500 1 LYS A 50 -71.49 -77.17 REMARK 500 1 GLN A 51 80.56 53.73 REMARK 500 1 ARG A 52 -63.95 161.19 REMARK 500 1 LEU A 58 -170.17 -49.24 REMARK 500 1 ARG A 88 75.62 -116.30 REMARK 500 1 TRP A 89 148.13 57.70 REMARK 500 1 ALA A 99 150.90 -48.61 REMARK 500 1 PRO A 104 -158.17 -49.13 REMARK 500 1 ARG A 105 -0.62 -145.72 REMARK 500 1 THR A 108 -42.58 -144.24 REMARK 500 1 ARG A 110 -62.31 -93.88 REMARK 500 1 HIS A 121 -36.91 -172.58 REMARK 500 1 PRO A 122 -159.79 -95.33 REMARK 500 1 PRO A 134 178.96 -43.08 REMARK 500 1 PRO A 146 157.17 -39.64 REMARK 500 1 PRO A 147 -161.00 -76.62 REMARK 500 1 GLU A 153 -78.97 -71.78 REMARK 500 1 VAL A 154 -29.25 -34.75 REMARK 500 1 ALA A 160 -98.28 -43.27 REMARK 500 1 PHE A 162 -62.16 -174.06 REMARK 500 1 PRO A 163 29.05 -73.41 REMARK 500 1 PRO A 166 142.42 -36.31 REMARK 500 1 LEU A 173 -73.70 -60.09 REMARK 500 1 ASN A 174 59.37 -174.74 REMARK 500 2 ASN A 4 -44.75 -144.92 REMARK 500 2 GLU A 20 82.38 60.92 REMARK 500 2 ARG A 21 -139.51 -163.47 REMARK 500 2 GLU A 28 23.18 -75.44 REMARK 500 2 ALA A 29 -75.48 -154.21 REMARK 500 2 PRO A 37 174.06 -38.69 REMARK 500 2 ASP A 38 69.72 38.08 REMARK 500 2 GLU A 48 -82.48 -69.57 REMARK 500 2 GLN A 51 66.55 35.29 REMARK 500 2 ARG A 52 -53.05 178.12 REMARK 500 2 LEU A 58 -163.34 -51.70 REMARK 500 2 ARG A 88 75.43 -115.34 REMARK 500 2 TRP A 89 153.11 56.37 REMARK 500 2 ALA A 99 152.46 -46.20 REMARK 500 2 THR A 103 -37.30 -167.16 REMARK 500 2 PRO A 104 -167.95 -66.70 REMARK 500 2 ARG A 105 -3.56 -178.58 REMARK 500 2 THR A 108 -40.57 -143.28 REMARK 500 2 ARG A 110 -80.40 -144.86 REMARK 500 2 PHE A 111 -125.47 -75.63 REMARK 500 REMARK 500 THIS ENTRY HAS 604 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25381 RELATED DB: BMRB DBREF 2MX1 A 2 190 UNP P45748 TSAC_ECOLI 2 190 SEQRES 1 A 189 ASN ASN ASN LEU GLN ARG ASP ALA ILE ALA ALA ALA ILE SEQRES 2 A 189 ASP VAL LEU ASN GLU GLU ARG VAL ILE ALA TYR PRO THR SEQRES 3 A 189 GLU ALA VAL PHE GLY VAL GLY CYS ASP PRO ASP SER GLU SEQRES 4 A 189 THR ALA VAL MET ARG LEU LEU GLU LEU LYS GLN ARG PRO SEQRES 5 A 189 VAL ASP LYS GLY LEU ILE LEU ILE ALA ALA ASN TYR GLU SEQRES 6 A 189 GLN LEU LYS PRO TYR ILE ASP ASP THR MET LEU THR ASP SEQRES 7 A 189 VAL GLN ARG GLU THR ILE PHE SER ARG TRP PRO GLY PRO SEQRES 8 A 189 VAL THR PHE VAL PHE PRO ALA PRO ALA THR THR PRO ARG SEQRES 9 A 189 TRP LEU THR GLY ARG PHE ASP SER LEU ALA VAL ARG VAL SEQRES 10 A 189 THR ASP HIS PRO LEU VAL VAL ALA LEU CYS GLN ALA TYR SEQRES 11 A 189 GLY LYS PRO LEU VAL SER THR SER ALA ASN LEU SER GLY SEQRES 12 A 189 LEU PRO PRO CYS ARG THR VAL ASP GLU VAL ARG ALA GLN SEQRES 13 A 189 PHE GLY ALA ALA PHE PRO VAL VAL PRO GLY GLU THR GLY SEQRES 14 A 189 GLY ARG LEU ASN PRO SER GLU ILE ARG ASP ALA LEU THR SEQRES 15 A 189 GLY GLU LEU PHE ARG GLN GLY HELIX 1 1 ASN A 2 GLU A 20 1 19 HELIX 2 2 SER A 39 LYS A 50 1 12 HELIX 3 3 ARG A 52 GLY A 57 1 6 HELIX 4 4 ASN A 64 LEU A 68 5 5 HELIX 5 5 THR A 78 ARG A 88 1 11 HELIX 6 6 LEU A 123 GLY A 132 1 10 HELIX 7 7 THR A 150 GLY A 159 1 10 SHEET 1 A 7 ILE A 23 TYR A 25 0 SHEET 2 A 7 GLY A 32 CYS A 35 -1 O GLY A 34 N ILE A 23 SHEET 3 A 7 LEU A 135 SER A 139 -1 O THR A 138 N VAL A 33 SHEET 4 A 7 ILE A 59 ALA A 62 -1 N ILE A 61 O LEU A 135 SHEET 5 A 7 LEU A 114 VAL A 118 1 O ARG A 117 N LEU A 60 SHEET 6 A 7 THR A 94 PHE A 97 -1 N PHE A 97 O LEU A 114 SHEET 7 A 7 ILE A 178 ASP A 180 1 O ARG A 179 N THR A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1