HEADER MEMBRANE PROTEIN 17-DEC-14 2MXA TITLE SOLUTION STRUCTURE OF THE NDH-1 COMPLEX SUBUNIT CUPS FROM TITLE 2 THERMOSYNECHOCOCCUS ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NDH-1 COMPLEX SENSORY SUBUNIT CUPS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 146786; SOURCE 4 GENE: CUPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PRSET6A KEYWDS MEMBRANE PROTEIN, BIOENERGETICS-ELECTRON TRANSFER COMPLEX, KEYWDS 2 CYANOBACTERIA, NDH-1 COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.KORSTE,H.WULFHORST,T.IKEGAMI,M.M.NOWACZYK,R.STOLL REVDAT 3 14-JUN-23 2MXA 1 REMARK SEQADV REVDAT 2 26-AUG-15 2MXA 1 JRNL REVDAT 1 10-JUN-15 2MXA 0 JRNL AUTH A.KORSTE,H.WULFHORST,T.IKEGAMI,M.M.NOWACZYK,R.STOLL JRNL TITL SOLUTION STRUCTURE OF THE NDH-1 COMPLEX SUBUNIT CUPS FROM JRNL TITL 2 THERMOSYNECHOCOCCUS ELONGATUS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1847 1212 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 25982357 JRNL DOI 10.1016/J.BBABIO.2015.05.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.2, ARIA REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INCLUDING WATER REFINEMENT REMARK 4 REMARK 4 2MXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000104159. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 CUPS, 50 MM TRIS, 50 MM NACL, 10 REMARK 210 MM [U-2H] DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC/HMQC; 2D 1H-13C REMARK 210 HSQC/HMQC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 500 MHZ; 600 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW ANY, NMRPIPE ANY, CNS, REMARK 210 TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ILE A 130 REMARK 465 LEU A 131 REMARK 465 MET A 132 REMARK 465 GLY A 133 REMARK 465 LEU A 134 REMARK 465 ASP A 135 REMARK 465 PRO A 136 REMARK 465 ALA A 137 REMARK 465 HIS A 138 REMARK 465 SER A 139 REMARK 465 PHE A 140 REMARK 465 GLN A 141 REMARK 465 GLU A 142 REMARK 465 THR A 143 REMARK 465 ASN A 144 REMARK 465 ILE A 145 REMARK 465 PRO A 146 REMARK 465 TYR A 147 REMARK 465 LYS A 148 REMARK 465 VAL A 149 REMARK 465 SER A 150 REMARK 465 ALA A 151 REMARK 465 TRP A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 PRO A 155 REMARK 465 GLN A 156 REMARK 465 PHE A 157 REMARK 465 GLU A 158 REMARK 465 LYS A 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 107 O VAL A 129 1.54 REMARK 500 HG1 THR A 37 O GLY A 75 1.56 REMARK 500 H ALA A 40 O HIS A 124 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 14 -172.93 -65.74 REMARK 500 1 PRO A 50 95.23 -53.29 REMARK 500 1 PRO A 61 169.47 -38.16 REMARK 500 1 PRO A 62 -8.96 -40.58 REMARK 500 1 ASN A 102 -53.19 -138.53 REMARK 500 1 LYS A 107 -123.46 46.51 REMARK 500 2 PHE A 14 -170.72 -67.14 REMARK 500 2 PRO A 61 170.57 -37.06 REMARK 500 2 PRO A 62 -9.14 -39.40 REMARK 500 2 ALA A 76 102.67 -56.98 REMARK 500 2 ASN A 102 -61.80 -107.14 REMARK 500 2 LYS A 107 -81.51 48.54 REMARK 500 3 PHE A 14 -172.15 -66.63 REMARK 500 3 LEU A 49 97.52 -32.23 REMARK 500 3 ASN A 60 14.33 -162.90 REMARK 500 3 ALA A 76 98.69 -61.80 REMARK 500 3 ASN A 102 -57.59 -132.83 REMARK 500 3 LYS A 107 -73.73 55.74 REMARK 500 3 ASN A 108 24.26 -149.69 REMARK 500 4 PHE A 14 -169.72 -65.90 REMARK 500 4 PRO A 61 168.38 -38.88 REMARK 500 4 PRO A 62 -8.21 -39.08 REMARK 500 4 GLN A 63 -17.80 -42.20 REMARK 500 4 ASN A 102 -63.98 -127.12 REMARK 500 4 LYS A 107 -132.34 46.90 REMARK 500 5 PHE A 14 -175.47 -66.16 REMARK 500 5 LEU A 49 103.63 -40.46 REMARK 500 5 PRO A 50 -80.86 -82.09 REMARK 500 5 PRO A 61 168.34 -37.31 REMARK 500 5 PRO A 62 -11.01 -40.03 REMARK 500 5 ALA A 76 101.24 -59.12 REMARK 500 5 LYS A 107 -106.99 43.49 REMARK 500 6 PHE A 14 -168.66 -65.73 REMARK 500 6 LEU A 30 -9.81 -58.54 REMARK 500 6 PRO A 61 168.30 -39.21 REMARK 500 6 PRO A 62 -10.06 -34.73 REMARK 500 6 ALA A 76 98.53 -56.22 REMARK 500 6 ASN A 102 -55.69 -128.13 REMARK 500 6 LYS A 107 -78.75 49.83 REMARK 500 6 ALA A 113 116.53 -162.99 REMARK 500 7 ALA A 2 122.17 -170.46 REMARK 500 7 PHE A 14 -178.31 -66.09 REMARK 500 7 LEU A 49 101.80 -33.64 REMARK 500 7 PRO A 50 -141.80 -84.10 REMARK 500 7 PRO A 61 168.49 -38.30 REMARK 500 7 PRO A 62 -10.32 -34.08 REMARK 500 7 ASN A 102 -55.83 -144.20 REMARK 500 7 LYS A 107 -82.19 55.36 REMARK 500 7 ASN A 108 23.03 -146.04 REMARK 500 8 PHE A 14 -174.56 -63.73 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19971 RELATED DB: BMRB DBREF 2MXA A 1 149 UNP Q8DMA1 Q8DMA1_THEEB 1 149 SEQADV 2MXA SER A 150 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA ALA A 151 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA TRP A 152 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA SER A 153 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA HIS A 154 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA PRO A 155 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA GLN A 156 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA PHE A 157 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA GLU A 158 UNP Q8DMA1 EXPRESSION TAG SEQADV 2MXA LYS A 159 UNP Q8DMA1 EXPRESSION TAG SEQRES 1 A 159 MET ALA THR ILE VAL ASP ILE ALA VAL ASN THR PRO GLY SEQRES 2 A 159 PHE SER THR LEU VAL THR ALA VAL LYS VAL ALA ASN LEU SEQRES 3 A 159 VAL GLU ALA LEU GLN SER PRO GLY PRO PHE THR VAL PHE SEQRES 4 A 159 ALA PRO ASN ASP ASP ALA PHE ALA LYS LEU PRO ASP GLY SEQRES 5 A 159 THR ILE THR SER LEU VAL GLN ASN PRO PRO GLN LEU GLY SEQRES 6 A 159 ARG ILE LEU LYS TYR HIS VAL VAL ALA GLY ALA TYR LYS SEQRES 7 A 159 ALA THR ASP LEU LYS ARG MET GLY ILE VAL THR SER LEU SEQRES 8 A 159 GLU GLY SER THR ILE PRO ILE HIS GLY ASP ASN PRO LEU SEQRES 9 A 159 GLU VAL LYS ASN ALA THR VAL LEU ALA ALA ASP ILE GLU SEQRES 10 A 159 ALA GLU ASN GLY ILE ILE HIS VAL ILE ASP THR VAL ILE SEQRES 11 A 159 LEU MET GLY LEU ASP PRO ALA HIS SER PHE GLN GLU THR SEQRES 12 A 159 ASN ILE PRO TYR LYS VAL SER ALA TRP SER HIS PRO GLN SEQRES 13 A 159 PHE GLU LYS HELIX 1 1 VAL A 5 THR A 11 1 7 HELIX 2 2 SER A 15 ALA A 24 1 10 HELIX 3 3 GLY A 52 ASN A 60 1 9 HELIX 4 4 GLN A 63 LYS A 69 1 7 HELIX 5 5 LYS A 78 GLY A 86 1 9 SHEET 1 A 7 VAL A 72 ALA A 74 0 SHEET 2 A 7 PHE A 36 PRO A 41 -1 N THR A 37 O VAL A 73 SHEET 3 A 7 ILE A 122 ILE A 126 1 O ILE A 122 N VAL A 38 SHEET 4 A 7 ALA A 109 GLU A 117 -1 N ALA A 113 O VAL A 125 SHEET 5 A 7 GLU A 105 VAL A 106 -1 N VAL A 106 O ALA A 109 SHEET 6 A 7 THR A 95 HIS A 99 -1 N HIS A 99 O GLU A 105 SHEET 7 A 7 ILE A 87 THR A 89 -1 N VAL A 88 O ILE A 96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1