HEADER    METAL BINDING PROTEIN                   12-JAN-15   2MXP              
TITLE     SOLUTION STRUCTURE OF NDP52 UBIQUITIN-BINDING ZINC FINGER             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN  
COMPND   3 2;                                                                   
COMPND   4 CHAIN: A;                                                            
COMPND   5 FRAGMENT: C-TERMINAL, UNP RESIDUES 414-446;                          
COMPND   6 SYNONYM: ANTIGEN NUCLEAR DOT 52 KDA PROTEIN, NUCLEAR DOMAIN 10       
COMPND   7 PROTEIN NDP52, NUCLEAR DOMAIN 10 PROTEIN 52, NUCLEAR DOT PROTEIN 52; 
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: CALCOCO2, NDP52;                                               
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET32A                                     
KEYWDS    ZINC FINGER, NDP52, UBIQUITIN-BINDING, C2H2-TYPE, METAL BINDING       
KEYWDS   2 PROTEIN                                                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    L.PAN,X.XIE                                                           
REVDAT   3   15-MAY-24 2MXP    1       REMARK                                   
REVDAT   2   14-JUN-23 2MXP    1       REMARK LINK                              
REVDAT   1   11-NOV-15 2MXP    0                                                
JRNL        AUTH   X.XIE,F.LI,Y.WANG,Y.WANG,Z.LIN,X.CHENG,J.LIU,C.CHEN,L.PAN    
JRNL        TITL   MOLECULAR BASIS OF UBIQUITIN RECOGNITION BY THE AUTOPHAGY    
JRNL        TITL 2 RECEPTOR CALCOCO2                                            
JRNL        REF    AUTOPHAGY                     V.  11  1775 2015              
JRNL        REFN                   ISSN 1554-8627                               
JRNL        PMID   26506893                                                     
JRNL        DOI    10.1080/15548627.2015.1082025                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, CNS                                         
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3                 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND   
REMARK   3                 READ (CNS)                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2MXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-15.                  
REMARK 100 THE DEPOSITION ID IS D_1000104174.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298; 298                           
REMARK 210  PH                             : 6.5; 6.5                           
REMARK 210  IONIC STRENGTH                 : 0.1; 0.1                           
REMARK 210  PRESSURE                       : AMBIENT ATM; AMBIENT ATM           
REMARK 210  SAMPLE CONTENTS                : 1 MM [U-100% 13C; U-100% 15N]      
REMARK 210                                   ENTITY_1-1, 1 MM [U-100% 15N]      
REMARK 210                                   ENTITY_1-2, 90% H2O/10% D2O; 1     
REMARK 210                                   MM [U-100% 13C; U-100% 15N]        
REMARK 210                                   ENTITY_1-3, 100% D2O; 1.2 MM       
REMARK 210                                   ENTITY_1-4, 100% D2O               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D CBCA(CO)NH; 3D HNCACB; 3D 1H    
REMARK 210                                   -15N NOESY; 2D 1H-13C HSQC; 3D     
REMARK 210                                   HCCH-TOCSY; 3D 1H-13C NOESY        
REMARK 210                                   ALIPHATIC; 2D 1H-1H NOESY          
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : AGILENT                            
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : PIPP, SPARKY, CNS                  
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 GLN A  51      112.32     61.09                                   
REMARK 500  1 PRO A  52       74.26    -62.06                                   
REMARK 500  1 CYS A  54      140.94   -177.67                                   
REMARK 500  1 ASP A  61       19.38     86.59                                   
REMARK 500  2 MET A  50      150.21     62.24                                   
REMARK 500  2 PRO A  52      174.64    -54.30                                   
REMARK 500  2 CYS A  54      147.36    177.68                                   
REMARK 500  2 ASP A  61       24.76     82.14                                   
REMARK 500  2 GLU A  68       33.07    -97.88                                   
REMARK 500  3 MET A  50      -46.57   -165.50                                   
REMARK 500  3 CYS A  54     -174.26    178.17                                   
REMARK 500  3 ASP A  61       36.92     80.10                                   
REMARK 500  4 CYS A  54      141.28    176.81                                   
REMARK 500  4 ASP A  61       38.67     78.18                                   
REMARK 500  5 ASP A  61      -37.94    153.86                                   
REMARK 500  5 LYS A  62      127.54    -31.20                                   
REMARK 500  5 GLU A  68       35.13    -98.92                                   
REMARK 500  6 CYS A  54     -179.14    179.47                                   
REMARK 500  6 ASP A  61      -37.93    153.11                                   
REMARK 500  6 LYS A  62      126.32    -30.72                                   
REMARK 500  6 GLU A  68       33.21    -97.45                                   
REMARK 500  7 PRO A  52       76.21    -69.59                                   
REMARK 500  7 CYS A  54     -173.28   -170.32                                   
REMARK 500  7 ASP A  61       17.53     82.45                                   
REMARK 500  7 LYS A  62      171.38    -59.27                                   
REMARK 500  8 CYS A  54      140.86   -172.85                                   
REMARK 500  8 ASP A  61       38.09     78.94                                   
REMARK 500  9 MET A  50       74.47   -103.34                                   
REMARK 500  9 LEU A  53       32.36     74.40                                   
REMARK 500  9 ASP A  61       13.68     86.79                                   
REMARK 500 10 GLN A  51       85.24   -153.81                                   
REMARK 500 10 PRO A  52     -170.20    -54.31                                   
REMARK 500 10 CYS A  54     -175.50    175.76                                   
REMARK 500 10 ASP A  61       39.67     76.67                                   
REMARK 500 11 MET A  50      -39.42   -177.11                                   
REMARK 500 11 GLN A  51       69.89     60.64                                   
REMARK 500 11 PRO A  52      171.96    -56.41                                   
REMARK 500 11 ASP A  61        7.89     96.52                                   
REMARK 500 12 MET A  50      -52.02   -176.97                                   
REMARK 500 12 GLN A  51      147.02     61.82                                   
REMARK 500 12 CYS A  54     -175.63    171.62                                   
REMARK 500 12 ASP A  61       12.60     85.46                                   
REMARK 500 12 GLU A  68       35.52    -99.41                                   
REMARK 500 13 MET A  50       97.87     59.98                                   
REMARK 500 13 PRO A  52       76.99    -67.81                                   
REMARK 500 13 CYS A  54      139.06   -176.44                                   
REMARK 500 13 ASP A  61       33.90     84.51                                   
REMARK 500 13 GLU A  68       32.43    -97.63                                   
REMARK 500 14 MET A  50      -66.44   -160.35                                   
REMARK 500 14 GLN A  51      102.56    -48.90                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      75 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 101  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  57   SG                                                     
REMARK 620 2 CYS A  60   SG  121.1                                              
REMARK 620 3 HIS A  75   NE2 102.2 107.7                                        
REMARK 620 4 HIS A  79   NE2 108.3 116.6  97.0                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4XKL   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 25423   RELATED DB: BMRB                                 
DBREF  2MXP A   49    81  UNP    Q13137   CACO2_HUMAN    414    446             
SEQRES   1 A   33  GLN MET GLN PRO LEU CYS PHE ASN CYS PRO ILE CYS ASP          
SEQRES   2 A   33  LYS ILE PHE PRO ALA THR GLU LYS GLN ILE PHE GLU ASP          
SEQRES   3 A   33  HIS VAL PHE CYS HIS SER LEU                                  
HET     ZN  A 101       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    ZN 2+                                                        
HELIX    1   1 GLU A   68  SER A   80  1                                  13    
SHEET    1   A 2 CYS A  54  ASN A  56  0                                        
SHEET    2   A 2 ILE A  63  PRO A  65 -1  O  PHE A  64   N  PHE A  55           
LINK         SG  CYS A  57                ZN    ZN A 101     1555   1555  2.30  
LINK         SG  CYS A  60                ZN    ZN A 101     1555   1555  2.29  
LINK         NE2 HIS A  75                ZN    ZN A 101     1555   1555  1.97  
LINK         NE2 HIS A  79                ZN    ZN A 101     1555   1555  2.02  
SITE     1 AC1  4 CYS A  57  CYS A  60  HIS A  75  HIS A  79                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1