HEADER RNA BINDING PROTEIN 25-JAN-15 2MYI TITLE SOLUTION STRUCTURE OF CRC FROM P. SYRINGAE LZ4W COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE III; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. LZ4W; SOURCE 3 ORGANISM_TAXID: 1206777; SOURCE 4 GENE: B195_00495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CRC, CATABOLITE REPRESSION CONTROL PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.V.DESHMUKH,R.SHARMA REVDAT 3 19-JUL-23 2MYI 1 JRNL REVDAT 2 14-JUN-23 2MYI 1 REMARK REVDAT 1 27-JAN-16 2MYI 0 JRNL AUTH R.SHARMA,J.PAUL,S.PATURI,M.K.RAY,M.V.DESHMUKH JRNL TITL CRC OF PSEUDOMONAS SYRINGAE LZ4W UTILIZES THE DOMINANT RNA JRNL TITL 2 BINDING SITE FOR MUTUALLY EXCLUSIVE INTERACTIONS WITH JRNL TITL 3 HFQ:MRNA AND CRCY/Z RNA JRNL REF J.MAGN.RESON. V.0-11 00047 2022 JRNL REFN ISSN 0022-2364 JRNL DOI 10.1016/J.JMRO.2022.100047 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104198. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.215 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 400 UM [U-100% 15N] CRC, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 36 H ALA A 38 1.46 REMARK 500 O GLY A 115 H ASP A 118 1.52 REMARK 500 O MET A 212 H ASN A 214 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 9 62.90 -109.89 REMARK 500 1 ALA A 28 155.20 -32.35 REMARK 500 1 LEU A 33 -129.44 93.37 REMARK 500 1 GLN A 34 -128.99 66.46 REMARK 500 1 ASP A 35 104.28 175.54 REMARK 500 1 ARG A 37 -60.10 63.05 REMARK 500 1 SER A 39 -171.07 -66.35 REMARK 500 1 ASP A 45 151.70 -45.60 REMARK 500 1 LEU A 50 -132.22 -130.37 REMARK 500 1 ALA A 57 155.30 168.47 REMARK 500 1 ALA A 60 -92.13 -116.48 REMARK 500 1 GLU A 61 56.09 -103.72 REMARK 500 1 PRO A 63 14.26 -63.71 REMARK 500 1 ALA A 64 -63.41 -124.42 REMARK 500 1 GLN A 65 44.91 166.72 REMARK 500 1 THR A 81 55.74 -100.28 REMARK 500 1 LEU A 83 78.51 -113.71 REMARK 500 1 PHE A 85 -99.97 56.73 REMARK 500 1 PHE A 99 -68.32 -153.19 REMARK 500 1 ASP A 100 -34.47 -137.63 REMARK 500 1 VAL A 102 90.22 60.95 REMARK 500 1 LEU A 109 83.73 -158.98 REMARK 500 1 ASN A 114 -77.45 -111.91 REMARK 500 1 ASP A 116 -38.45 -25.27 REMARK 500 1 TYR A 150 52.02 -96.48 REMARK 500 1 GLN A 154 -13.45 77.82 REMARK 500 1 ASN A 160 34.40 -72.20 REMARK 500 1 TRP A 161 -36.82 -37.93 REMARK 500 1 ARG A 162 -71.60 -48.72 REMARK 500 1 SER A 164 -25.62 -34.97 REMARK 500 1 GLN A 166 -35.40 177.89 REMARK 500 1 MET A 185 13.58 56.13 REMARK 500 1 ASP A 189 66.23 -106.33 REMARK 500 1 ALA A 190 -13.70 -49.53 REMARK 500 1 TRP A 204 109.74 -42.59 REMARK 500 1 ASP A 206 -114.76 -131.38 REMARK 500 1 ASN A 207 -154.97 -73.56 REMARK 500 1 GLU A 211 -70.70 -60.30 REMARK 500 1 LEU A 213 57.70 -62.01 REMARK 500 1 ASN A 214 39.79 34.80 REMARK 500 1 PHE A 219 90.76 80.06 REMARK 500 1 ASP A 220 92.49 -164.86 REMARK 500 1 PRO A 226 12.49 -52.31 REMARK 500 1 ARG A 230 32.61 -93.44 REMARK 500 1 SER A 244 -120.64 142.49 REMARK 500 1 TYR A 253 -119.89 163.25 REMARK 500 1 THR A 256 127.01 62.37 REMARK 500 2 VAL A 6 147.28 -174.20 REMARK 500 2 ASN A 9 51.65 -95.22 REMARK 500 2 ASP A 35 71.15 50.63 REMARK 500 REMARK 500 THIS ENTRY HAS 474 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19558 RELATED DB: BMRB REMARK 900 BACKBONE AND STEREOSPECIFIC METHYL ILE(D1), LEU AND VAL CHEMICAL REMARK 900 SHIFT ASSIGNMENT OF CRC DBREF 2MYI A 1 259 UNP M5QNE2 M5QNE2_9PSED 1 259 SEQRES 1 A 259 MET ARG ILE ILE SER VAL ASN VAL ASN GLY ILE GLN THR SEQRES 2 A 259 ALA VAL GLU ARG GLY LEU LEU SER TRP LEU GLN ALA GLN SEQRES 3 A 259 ASN ALA ASP VAL ILE CYS LEU GLN ASP THR ARG ALA SER SEQRES 4 A 259 ALA PHE GLU LEU ASP ASP PRO ALA TYR GLN LEU ASP GLY SEQRES 5 A 259 TYR PHE LEU TYR ALA CYS GLU ALA GLU VAL PRO ALA GLN SEQRES 6 A 259 GLY GLY VAL ALA LEU TYR SER ARG LEU GLN PRO LYS ALA SEQRES 7 A 259 VAL ILE THR GLY LEU GLY PHE GLU THR ALA ASP ARG TYR SEQRES 8 A 259 GLY ARG TYR LEU GLN ALA ASP PHE ASP LYS VAL SER ILE SEQRES 9 A 259 ALA THR LEU LEU LEU PRO SER GLY GLN ASN GLY ASP GLU SEQRES 10 A 259 ASP LEU ASN GLN LYS PHE LYS LEU MET ASP ASP PHE ALA SEQRES 11 A 259 ARG TYR LEU ASP LYS GLN ARG ARG LYS ARG ARG GLU TYR SEQRES 12 A 259 ILE TYR CYS GLY SER LEU TYR VAL ALA GLN GLN LYS LEU SEQRES 13 A 259 ASP ILE LYS ASN TRP ARG ASP SER GLN GLN SER PRO GLY SEQRES 14 A 259 PHE LEU ALA PRO GLU ARG ALA TRP MET ASP GLU ILE VAL SEQRES 15 A 259 GLY ASN MET GLY TYR VAL ASP ALA LEU ARG GLU VAL SER SEQRES 16 A 259 ARG GLU GLY ASP GLN TYR SER TRP TRP PRO ASP ASN GLU SEQRES 17 A 259 GLN ALA GLU MET LEU ASN LEU GLY TRP ARG PHE ASP TYR SEQRES 18 A 259 GLN LEU LEU THR PRO GLY LEU ARG ARG PHE VAL ARG SER SEQRES 19 A 259 ALA ARG LEU PRO ARG GLN PRO ARG PHE SER GLN HIS ALA SEQRES 20 A 259 PRO LEU ILE VAL ASP TYR ASP TRP THR LEU THR ILE HELIX 1 1 GLY A 10 ARG A 17 1 8 HELIX 2 2 GLY A 18 GLN A 26 1 9 HELIX 3 3 ASP A 45 GLN A 49 5 5 HELIX 4 4 THR A 87 GLY A 92 1 6 HELIX 5 5 GLY A 115 LYS A 139 1 25 HELIX 6 6 ASP A 157 TRP A 161 5 5 HELIX 7 7 LEU A 171 GLY A 183 1 13 HELIX 8 8 GLU A 208 LEU A 213 1 6 SHEET 1 A 6 TYR A 56 CYS A 58 0 SHEET 2 A 6 VAL A 68 SER A 72 -1 O LEU A 70 N TYR A 56 SHEET 3 A 6 VAL A 30 LEU A 33 -1 N LEU A 33 O ALA A 69 SHEET 4 A 6 ARG A 2 VAL A 6 1 N ILE A 4 O CYS A 32 SHEET 5 A 6 LEU A 249 ASP A 252 -1 O LEU A 249 N SER A 5 SHEET 6 A 6 SER A 234 ARG A 236 -1 N ARG A 236 O ILE A 250 SHEET 1 B 6 ALA A 78 THR A 81 0 SHEET 2 B 6 LEU A 95 ASP A 98 -1 O ASP A 98 N ALA A 78 SHEET 3 B 6 SER A 103 LEU A 108 -1 O THR A 106 N LEU A 95 SHEET 4 B 6 TYR A 143 SER A 148 1 O ILE A 144 N ALA A 105 SHEET 5 B 6 TYR A 221 LEU A 224 -1 O TYR A 221 N GLY A 147 SHEET 6 B 6 VAL A 188 ASP A 189 -1 N VAL A 188 O LEU A 224 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1