HEADER DNA BINDING PROTEIN 18-FEB-15 2MZN TITLE NMR STRUCTURE OF THE HLTF HIRAN DOMAIN IN ITS DNA-BOUND CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELICASE-LIKE TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 51-171; COMPND 5 SYNONYM: DNA-BINDING PROTEIN/PLASMINOGEN ACTIVATOR INHIBITOR 1 COMPND 6 REGULATOR, HIP116, RING FINGER PROTEIN 80, SWI/SNF-RELATED MATRIX- COMPND 7 ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A MEMBER COMPND 8 3, SUCROSE NONFERMENTING PROTEIN 2-LIKE 3; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLTF, HIP116A, RNF80, SMARCA3, SNF2L3, ZBU1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HIRAN, HLTF, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.KORZHNEV,S.ELDIRANY REVDAT 2 14-JUN-23 2MZN 1 REMARK SEQADV REVDAT 1 01-JUL-15 2MZN 0 JRNL AUTH A.C.KILE,D.A.CHAVEZ,J.BACAL,S.ELDIRANY,D.M.KORZHNEV, JRNL AUTH 2 I.BEZSONOVA,B.F.EICHMAN,K.A.CIMPRICH JRNL TITL HLTF'S ANCIENT HIRAN DOMAIN BINDS 3' DNA ENDS TO DRIVE JRNL TITL 2 REPLICATION FORK REVERSAL. JRNL REF MOL.CELL V. 58 1090 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26051180 JRNL DOI 10.1016/J.MOLCEL.2015.05.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CNSSOLVE REMARK 3 AUTHORS : GODDARD (SPARKY), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE OF THE 15N/13C-LABELED REMARK 3 HIRAN DOMAIN WAS DETERMINED IN THE PRESENCE OF UNLABELED SSDNA REMARK 3 (DTTTTTTTTTT). THE DNA STRUCTURE WAS NOT DETERMINED. DNA-BINDING REMARK 3 SITE WAS MAPPED USING NMR CHEMICAL SHIFT CHANGES. THE VALUES OF REMARK 3 DNA-BINDING INDUCED CHEMICAL SHIFT CHANGES ARE AVAILABLE AS PART REMARK 3 OF BMRB DEPOSITION 25492. REMARK 4 REMARK 4 2MZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000104236. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PROTEIN, 20 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY; 3D 1H-15N NOESY; REMARK 210 3D HCCH-TOCSY; 3D HNCO; 3D HNCA; REMARK 210 3D HN(CO)CA; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY CN_ REMARK 210 FILTERED REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : PREMIUMCOMPACT REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA, CNSSOLVE, REMARK 210 NMRPIPE, PROCHECK, TALOS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 87 -156.98 -68.00 REMARK 500 1 ASN A 90 -37.30 -177.07 REMARK 500 1 ASN A 91 103.17 -53.79 REMARK 500 1 ASP A 94 67.79 -117.01 REMARK 500 2 ARG A 64 11.65 -147.64 REMARK 500 2 ARG A 87 -170.77 -68.24 REMARK 500 2 ASN A 90 13.07 -162.41 REMARK 500 3 ARG A 71 7.26 -65.66 REMARK 500 3 ASN A 90 -56.51 -132.17 REMARK 500 3 ASP A 94 47.62 -90.72 REMARK 500 3 ALA A 138 78.91 55.48 REMARK 500 3 LYS A 170 116.73 -162.15 REMARK 500 4 ARG A 64 43.93 -161.01 REMARK 500 4 ARG A 87 -164.60 -70.08 REMARK 500 4 ASN A 90 -42.49 -164.21 REMARK 500 4 ASN A 91 101.39 -58.38 REMARK 500 4 PHE A 142 -168.83 -77.35 REMARK 500 4 LYS A 170 144.96 -174.39 REMARK 500 5 ARG A 64 31.93 -162.36 REMARK 500 5 TYR A 73 -70.41 -113.42 REMARK 500 5 ARG A 87 -157.38 -70.41 REMARK 500 5 ASN A 90 -38.78 -164.91 REMARK 500 6 TYR A 72 -70.16 -65.90 REMARK 500 6 ALA A 118 -63.89 -94.10 REMARK 500 8 ALA A 138 87.85 59.57 REMARK 500 9 ARG A 87 -163.82 -77.95 REMARK 500 9 ASN A 90 -53.35 -140.35 REMARK 500 9 ASN A 91 108.67 -53.72 REMARK 500 9 ASP A 94 40.16 -107.95 REMARK 500 10 TYR A 73 -70.29 -115.36 REMARK 500 11 TYR A 73 -75.01 -114.82 REMARK 500 11 ASN A 80 51.69 -117.66 REMARK 500 11 ASN A 90 24.86 -162.48 REMARK 500 11 VAL A 133 119.75 -161.54 REMARK 500 11 PHE A 142 -165.69 -77.94 REMARK 500 12 TYR A 73 -72.45 -103.77 REMARK 500 12 HIS A 110 136.25 -176.65 REMARK 500 13 ASP A 94 59.85 -103.83 REMARK 500 13 ALA A 138 71.50 56.07 REMARK 500 13 PHE A 142 -169.29 -79.82 REMARK 500 14 ARG A 64 30.77 -153.84 REMARK 500 14 TYR A 72 -70.24 -62.18 REMARK 500 14 ARG A 87 -164.62 -65.37 REMARK 500 14 ASP A 88 110.42 -39.63 REMARK 500 14 ASN A 90 17.98 -169.20 REMARK 500 14 HIS A 110 123.85 -172.09 REMARK 500 15 TYR A 73 -70.29 -112.62 REMARK 500 15 ASP A 88 107.01 -34.45 REMARK 500 15 ASN A 90 -44.95 -158.28 REMARK 500 15 ASN A 91 103.02 -58.50 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25492 RELATED DB: BMRB DBREF 2MZN A 51 171 UNP Q14527 HLTF_HUMAN 51 171 SEQADV 2MZN GLY A 50 UNP Q14527 EXPRESSION TAG SEQRES 1 A 122 GLY SER ASP GLU GLU VAL ASP SER VAL LEU PHE GLY SER SEQRES 2 A 122 LEU ARG GLY HIS VAL VAL GLY LEU ARG TYR TYR THR GLY SEQRES 3 A 122 VAL VAL ASN ASN ASN GLU MET VAL ALA LEU GLN ARG ASP SEQRES 4 A 122 PRO ASN ASN PRO TYR ASP LYS ASN ALA ILE LYS VAL ASN SEQRES 5 A 122 ASN VAL ASN GLY ASN GLN VAL GLY HIS LEU LYS LYS GLU SEQRES 6 A 122 LEU ALA GLY ALA LEU ALA TYR ILE MET ASP ASN LYS LEU SEQRES 7 A 122 ALA GLN ILE GLU GLY VAL VAL PRO PHE GLY ALA ASN ASN SEQRES 8 A 122 ALA PHE THR MET PRO LEU HIS MET THR PHE TRP GLY LYS SEQRES 9 A 122 GLU GLU ASN ARG LYS ALA VAL SER ASP GLN LEU LYS LYS SEQRES 10 A 122 HIS GLY PHE LYS LEU HELIX 1 1 GLY A 50 VAL A 55 1 6 HELIX 2 2 VAL A 68 TYR A 73 5 6 HELIX 3 3 LYS A 112 ASN A 125 1 14 HELIX 4 4 LYS A 153 GLY A 168 1 16 SHEET 1 A 6 VAL A 58 VAL A 67 0 SHEET 2 A 6 MET A 144 GLY A 152 -1 O PHE A 150 N PHE A 60 SHEET 3 A 6 GLN A 129 VAL A 134 -1 N GLN A 129 O TRP A 151 SHEET 4 A 6 GLU A 81 GLN A 86 -1 N GLU A 81 O VAL A 134 SHEET 5 A 6 LYS A 99 ASN A 102 -1 O ASN A 101 N ALA A 84 SHEET 6 A 6 GLY A 109 HIS A 110 -1 O GLY A 109 N VAL A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1