HEADER PROTEIN BINDING 27-MAR-15 2N1D TITLE SOLUTION STRUCTURE OF THE MRG15-MRGBP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRG/MORF4L-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 69-119; COMPND 5 SYNONYM: MRG-BINDING PROTEIN, UP-REGULATED IN COLON CANCER 4, URCC4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MORTALITY FACTOR 4-LIKE PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 194-362; COMPND 11 SYNONYM: MORF-RELATED GENE 15 PROTEIN, PROTEIN MSL3-1, TRANSCRIPTION COMPND 12 FACTOR-LIKE PROTEIN MRG15; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MRGBP, C20ORF20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: MORF4L1, MRG15, FWP006, HSPC008, HSPC061, PP368; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MRG DOMAIN, PROTEIN-PROTEIN INTERACTION, TIP60-NUA4 COMPLEX, HAT KEYWDS 2 COMPLEX, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.XIE,A.M.ZMYSLOSKI,Y.ZHANG,I.RADHAKRISHNAN REVDAT 4 15-MAY-24 2N1D 1 REMARK REVDAT 3 14-JUN-23 2N1D 1 REMARK SEQADV REVDAT 2 17-JUN-15 2N1D 1 JRNL REVDAT 1 27-MAY-15 2N1D 0 JRNL AUTH T.XIE,A.M.ZMYSLOWSKI,Y.ZHANG,I.RADHAKRISHNAN JRNL TITL STRUCTURAL BASIS FOR MULTI-SPECIFICITY OF MRG DOMAINS. JRNL REF STRUCTURE V. 23 1049 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25960410 JRNL DOI 10.1016/J.STR.2015.03.020 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104298. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN 1, 0.8 MM PROTEIN 2, 90% REMARK 210 H2O/10% D2O; 0.8 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN 1, 0.8 MM REMARK 210 PROTEIN 2, 100% D2O; 0.9 MM REMARK 210 PROTEIN 1, 0.9 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN 2, 90% H2O/10% REMARK 210 D2O; 0.9 MM PROTEIN 1, 0.9 MM [U- REMARK 210 100% 13C; U-100% 15N] PROTEIN 2, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D DOUBLE HALF-FILTERED REMARK 210 1H-1H NOESY; 3D 15N,13C-FILTERED, REMARK 210 15N,13C-EDITED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, RESTRAINT VIOLATIONS, REMARK 210 AND RMS DEVIATIONS FROM THE REMARK 210 IDEAL COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 238 HH12 ARG B 265 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 71 -103.47 54.49 REMARK 500 1 PHE A 98 82.11 55.27 REMARK 500 1 VAL A 106 -153.53 41.85 REMARK 500 1 LEU B 184 149.77 179.87 REMARK 500 2 ASN A 67 -71.37 -151.67 REMARK 500 2 GLN A 71 -172.14 64.27 REMARK 500 2 TYR A 85 -109.53 -125.45 REMARK 500 2 ASP A 86 18.13 -164.75 REMARK 500 2 LEU A 96 77.86 -113.45 REMARK 500 2 ASN A 100 149.18 79.92 REMARK 500 2 VAL A 106 103.64 63.58 REMARK 500 2 ASN B 153 -55.69 -130.94 REMARK 500 2 ALA B 154 39.92 179.07 REMARK 500 2 THR B 207 74.71 -157.45 REMARK 500 3 PRO A 73 13.53 -69.80 REMARK 500 3 VAL A 76 -58.74 -154.34 REMARK 500 3 PHE A 98 102.35 -32.71 REMARK 500 3 PRO A 99 43.26 -93.41 REMARK 500 3 LEU B 184 155.38 179.70 REMARK 500 3 ASP B 208 -87.80 -80.66 REMARK 500 3 LEU B 233 30.58 -83.83 REMARK 500 3 GLN B 256 -62.18 -103.45 REMARK 500 3 PRO B 278 -106.51 -68.63 REMARK 500 3 LEU B 279 -161.50 60.38 REMARK 500 4 LYS A 75 -67.72 68.32 REMARK 500 4 PHE A 98 101.76 -35.95 REMARK 500 4 PRO A 99 31.50 -95.13 REMARK 500 4 ASN B 153 -163.43 59.63 REMARK 500 4 LEU B 184 144.50 -177.79 REMARK 500 4 ASN B 189 -165.81 -112.47 REMARK 500 4 ASN B 206 -66.90 -97.97 REMARK 500 4 LEU B 233 36.36 -86.23 REMARK 500 4 PRO B 278 85.99 -66.13 REMARK 500 5 ARG A 70 98.13 -69.49 REMARK 500 5 LYS A 75 -50.36 73.68 REMARK 500 5 PHE A 98 77.02 62.38 REMARK 500 5 VAL A 106 82.15 33.82 REMARK 500 5 ASP B 208 -75.20 -136.25 REMARK 500 5 GLN B 232 -41.33 -133.10 REMARK 500 6 VAL A 72 118.29 -162.80 REMARK 500 6 VAL A 76 -70.11 -111.11 REMARK 500 6 PHE A 98 83.18 54.26 REMARK 500 6 ASN A 100 87.47 43.25 REMARK 500 6 VAL A 106 87.02 36.11 REMARK 500 6 LEU B 184 150.05 179.53 REMARK 500 6 ALA B 252 109.92 -54.19 REMARK 500 6 GLN B 256 -61.70 -105.03 REMARK 500 7 ASN A 67 -174.54 179.94 REMARK 500 7 ARG A 70 -42.18 -135.64 REMARK 500 7 GLN A 71 178.83 64.42 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LKM RELATED DB: PDB REMARK 900 SAME MRG DOMAIN IN COMPLEX WITH ANOTHER PROTEIN REMARK 900 RELATED ID: 25556 RELATED DB: BMRB DBREF 2N1D A 69 119 UNP Q9NV56 MRGBP_HUMAN 69 119 DBREF 2N1D B 155 323 UNP Q9UBU8 MO4L1_HUMAN 194 362 SEQADV 2N1D SER A 66 UNP Q9NV56 EXPRESSION TAG SEQADV 2N1D ASN A 67 UNP Q9NV56 EXPRESSION TAG SEQADV 2N1D ALA A 68 UNP Q9NV56 EXPRESSION TAG SEQADV 2N1D SER B 152 UNP Q9UBU8 EXPRESSION TAG SEQADV 2N1D ASN B 153 UNP Q9UBU8 EXPRESSION TAG SEQADV 2N1D ALA B 154 UNP Q9UBU8 EXPRESSION TAG SEQRES 1 A 54 SER ASN ALA GLY ARG GLN VAL PRO SER LYS VAL ILE TRP SEQRES 2 A 54 ASP HIS LEU SER THR MET TYR ASP MET GLN ALA LEU HIS SEQRES 3 A 54 GLU SER GLU ILE LEU PRO PHE PRO ASN PRO GLU ARG ASN SEQRES 4 A 54 PHE VAL LEU PRO GLU GLU ILE ILE GLN GLU VAL ARG GLU SEQRES 5 A 54 GLY LYS SEQRES 1 B 172 SER ASN ALA GLU VAL LYS VAL LYS ILE PRO GLU GLU LEU SEQRES 2 B 172 LYS PRO TRP LEU VAL ASP ASP TRP ASP LEU ILE THR ARG SEQRES 3 B 172 GLN LYS GLN LEU PHE TYR LEU PRO ALA LYS LYS ASN VAL SEQRES 4 B 172 ASP SER ILE LEU GLU ASP TYR ALA ASN TYR LYS LYS SER SEQRES 5 B 172 ARG GLY ASN THR ASP ASN LYS GLU TYR ALA VAL ASN GLU SEQRES 6 B 172 VAL VAL ALA GLY ILE LYS GLU TYR PHE ASN VAL MET LEU SEQRES 7 B 172 GLY THR GLN LEU LEU TYR LYS PHE GLU ARG PRO GLN TYR SEQRES 8 B 172 ALA GLU ILE LEU ALA ASP HIS PRO ASP ALA PRO MET SER SEQRES 9 B 172 GLN VAL TYR GLY ALA PRO HIS LEU LEU ARG LEU PHE VAL SEQRES 10 B 172 ARG ILE GLY ALA MET LEU ALA TYR THR PRO LEU ASP GLU SEQRES 11 B 172 LYS SER LEU ALA LEU LEU LEU ASN TYR LEU HIS ASP PHE SEQRES 12 B 172 LEU LYS TYR LEU ALA LYS ASN SER ALA THR LEU PHE SER SEQRES 13 B 172 ALA SER ASP TYR GLU VAL ALA PRO PRO GLU TYR HIS ARG SEQRES 14 B 172 LYS ALA VAL HELIX 1 1 VAL A 72 LYS A 75 5 4 HELIX 2 2 VAL A 76 MET A 84 1 9 HELIX 3 3 MET A 87 GLU A 94 1 8 HELIX 4 4 PRO A 108 ARG A 116 1 9 HELIX 5 5 LEU B 164 ARG B 177 1 14 HELIX 6 6 ASN B 189 GLY B 205 1 17 HELIX 7 7 ASP B 208 VAL B 227 1 20 HELIX 8 8 TYR B 235 PHE B 237 5 3 HELIX 9 9 GLU B 238 HIS B 249 1 12 HELIX 10 10 PRO B 253 TYR B 258 1 6 HELIX 11 11 LEU B 263 LEU B 274 1 12 HELIX 12 12 ASP B 280 ASN B 301 1 22 HELIX 13 13 SER B 302 LEU B 305 5 4 HELIX 14 14 SER B 307 TYR B 311 5 5 HELIX 15 15 PRO B 315 ARG B 320 1 6 SHEET 1 A 2 GLN B 180 LEU B 181 0 SHEET 2 A 2 GLU B 312 VAL B 313 -1 O GLU B 312 N LEU B 181 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1