HEADER PROTEIN BINDING 23-APR-15 2N1U TITLE STRUCTURE OF SAP30L COREPRESSOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30L; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-92; COMPND 5 SYNONYM: HCV NON-STRUCTURAL PROTEIN 4A-TRANSACTIVATED PROTEIN 2, SIN3 COMPND 6 COREPRESSOR COMPLEX SUBUNIT SAP30L, SIN3-ASSOCIATED PROTEIN P30-LIKE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAP30L, NS4ATP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR H.TOSSAVAINEN,P.PERMI REVDAT 3 23-MAR-16 2N1U 1 JRNL REVDAT 2 09-DEC-15 2N1U 1 JRNL REVDAT 1 25-NOV-15 2N1U 0 JRNL AUTH M.LAITAOJA,H.TOSSAVAINEN,T.PIHLAJAMAA,J.VALJAKKA,K.VIIRI, JRNL AUTH 2 O.LOHI,P.PERMI,J.JANIS JRNL TITL REDOX-DEPENDENT DISULFIDE BOND FORMATION IN SAP30L JRNL TITL 2 COREPRESSOR PROTEIN: IMPLICATIONS FOR STRUCTURE AND JRNL TITL 3 FUNCTION. JRNL REF PROTEIN SCI. V. 25 572 2016 JRNL REFN ISSN 0961-8368 JRNL PMID 26609676 JRNL DOI 10.1002/PRO.2849 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-15. REMARK 100 THE RCSB ID CODE IS RCSB104315. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] PROTEIN, REMARK 210 0.5 MM ZINC ION, 20 MM BIS-TRIS, REMARK 210 30 MM SODIUM CHLORIDE, 0.04% REMARK 210 SODIUM AZIDE, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HN(CO)CACB; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; (HB)CB(CGCD)HD; (HB) REMARK 210 CB(CGCDCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, SPARKY, CYANA, AMBER REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 9 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 10 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 13 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 14 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 15 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 27 76.92 -68.39 REMARK 500 1 CYS A 29 171.67 -56.69 REMARK 500 1 ASP A 34 2.31 58.19 REMARK 500 1 PHE A 47 78.05 -117.12 REMARK 500 1 LYS A 49 -5.31 -59.65 REMARK 500 1 LYS A 61 34.50 -75.70 REMARK 500 1 ARG A 69 42.29 39.79 REMARK 500 1 ASN A 86 -150.74 -97.38 REMARK 500 2 GLN A 27 65.90 -67.26 REMARK 500 2 ASP A 34 -5.00 64.37 REMARK 500 2 ASN A 44 29.08 -69.47 REMARK 500 2 PHE A 47 63.79 -113.90 REMARK 500 2 LYS A 61 47.86 -74.01 REMARK 500 2 ARG A 69 -7.67 56.00 REMARK 500 2 LEU A 71 56.93 -107.63 REMARK 500 2 LYS A 87 27.85 31.47 REMARK 500 3 CYS A 29 170.57 -57.06 REMARK 500 3 ASP A 34 -0.86 59.57 REMARK 500 3 GLU A 36 91.16 -69.29 REMARK 500 3 ARG A 37 93.08 -65.51 REMARK 500 3 LYS A 59 76.42 47.74 REMARK 500 3 ARG A 69 -16.99 57.29 REMARK 500 3 LEU A 71 58.42 -103.31 REMARK 500 3 ARG A 88 72.93 -45.18 REMARK 500 3 LYS A 91 55.19 -144.21 REMARK 500 4 ASP A 34 -41.84 69.89 REMARK 500 4 ASN A 44 39.65 -73.85 REMARK 500 4 PHE A 47 46.75 -78.09 REMARK 500 4 ARG A 69 25.06 45.61 REMARK 500 4 LEU A 71 49.08 -108.64 REMARK 500 4 LYS A 87 77.69 -107.19 REMARK 500 5 TYR A 25 11.31 -62.20 REMARK 500 5 CYS A 29 171.66 -55.34 REMARK 500 5 CYS A 30 13.88 -145.68 REMARK 500 5 ASP A 34 5.45 58.00 REMARK 500 5 GLU A 36 94.50 -68.04 REMARK 500 5 ASN A 44 29.41 -71.05 REMARK 500 5 LYS A 59 70.22 61.78 REMARK 500 5 LYS A 61 31.76 -99.32 REMARK 500 5 ARG A 69 9.61 53.24 REMARK 500 5 LEU A 71 52.72 -112.10 REMARK 500 5 ARG A 88 50.01 -61.15 REMARK 500 6 GLN A 27 95.53 -68.57 REMARK 500 6 ASP A 34 -10.17 61.32 REMARK 500 6 ASN A 44 46.92 -69.25 REMARK 500 6 PHE A 47 58.44 -95.41 REMARK 500 6 LYS A 61 34.19 -86.22 REMARK 500 6 ARG A 69 -9.12 46.92 REMARK 500 6 LEU A 71 59.12 -109.86 REMARK 500 6 LYS A 89 50.77 -69.32 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 37 0.09 SIDE CHAIN REMARK 500 7 ARG A 40 0.08 SIDE CHAIN REMARK 500 10 ARG A 37 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 ND1 REMARK 620 2 CYS A 38 SG 93.7 REMARK 620 3 CYS A 29 SG 118.2 113.3 REMARK 620 4 CYS A 74 SG 113.6 109.3 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25575 RELATED DB: BMRB DBREF 2N1U A 25 92 UNP Q9HAJ7 SP30L_HUMAN 25 92 SEQADV 2N1U GLY A 23 UNP Q9HAJ7 EXPRESSION TAG SEQADV 2N1U SER A 24 UNP Q9HAJ7 EXPRESSION TAG SEQRES 1 A 70 GLY SER TYR GLY GLN SER CYS CYS LEU ILE GLU ASP GLY SEQRES 2 A 70 GLU ARG CYS VAL ARG PRO ALA GLY ASN ALA SER PHE SER SEQRES 3 A 70 LYS ARG VAL GLN LYS SER ILE SER GLN LYS LYS LEU LYS SEQRES 4 A 70 LEU ASP ILE ASP LYS SER VAL ARG HIS LEU TYR ILE CYS SEQRES 5 A 70 ASP PHE HIS LYS ASN PHE ILE GLN SER VAL ARG ASN LYS SEQRES 6 A 70 ARG LYS ARG LYS THR HET ZN A 100 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ARG A 50 GLN A 57 1 8 HELIX 2 2 ASP A 75 VAL A 84 1 10 SHEET 1 A 3 GLU A 36 ARG A 37 0 SHEET 2 A 3 LEU A 31 GLU A 33 -1 N GLU A 33 O GLU A 36 SHEET 3 A 3 LEU A 62 ILE A 64 -1 O ASP A 63 N ILE A 32 SHEET 1 B 2 ALA A 42 SER A 46 0 SHEET 2 B 2 TYR A 72 CYS A 74 -1 O ILE A 73 N ALA A 45 LINK ND1 HIS A 77 ZN ZN A 100 1555 1555 2.08 LINK SG CYS A 38 ZN ZN A 100 1555 1555 2.22 LINK SG CYS A 29 ZN ZN A 100 1555 1555 2.26 LINK SG CYS A 74 ZN ZN A 100 1555 1555 2.35 SITE 1 AC1 4 CYS A 29 CYS A 38 CYS A 74 HIS A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1