HEADER TRANSCRIPTION 27-APR-15 2N22 OBSLTE 08-MAR-17 2N22 5URN TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT TITLE 2 FROM TFIIH AND THE TRANSACTIVATION DOMAIN OF P65 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN, UNP RESIDUES 2-115; COMPND 5 SYNONYM: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT COMPND 6 TFB1, TFIIH SUBUNIT TFB1, RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 COMPND 7 KDA SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TRANSCRIPTION FACTOR P65; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: TRANSACTIVATION DOMAIN 1, UNP RESIDUES 521-551; COMPND 13 SYNONYM: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT, NUCLEAR FACTOR OF COMPND 14 KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 3; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: TFB1, YDR311W, D9740.3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-TEV; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RELA, NFKB3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PGEX-TEV KEYWDS TRANSCRIPTION FACTOR TFIIH, TRANSACTIVATION DOMAIN, NUCLEAR FACTOR KEYWDS 2 KAPPA-B, TRANSCRIPTIONAL ACTIVATION, P62/TFB1 SUBUNIT, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.LECOQ,J.J.G.OMICHINSKI,L.RAIOLA,N.CYR,P.CHABOT,G.ARSENEAULT REVDAT 2 08-MAR-17 2N22 1 OBSLTE REVDAT 1 27-APR-16 2N22 0 JRNL AUTH L.LECOQ,L.RAIOLA,P.CHABOT,N.CYR,G.ARSENEAULT, JRNL AUTH 2 J.J.G.OMICHINSKI JRNL TITL STRUCTURAL CHARACTERIZATION OF THE COMPLEX BETWEEN THE JRNL TITL 2 TRANSACTIVATION DOMAIN OF P65 AND P62/TFB1 SUBUNIT OF TFIIH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21, CNS 1.21, CNS 1.21, CNS 1.21 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (CNS), BRUNGER A. T. ET.AL. (CNS), LINGE, O' REMARK 3 DONOGHUE AND NILGES (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-15. REMARK 100 THE RCSB ID CODE IS RCSB104323. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 RNA POLYMERASE II TRANSCRIPTION REMARK 210 FACTOR B SUBUNIT 1, 2 MM REMARK 210 TRANSCRIPTION FACTOR P65, 90% REMARK 210 H2O/10% D2O; 0.8 MM [U-100% 13C; REMARK 210 U-100% 15N] RNA POLYMERASE II REMARK 210 TRANSCRIPTION FACTOR B SUBUNIT 1, REMARK 210 2 MM TRANSCRIPTION FACTOR P65, REMARK 210 100% D2O; 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] TRANSCRIPTION FACTOR REMARK 210 P65, 2 MM RNA POLYMERASE II REMARK 210 TRANSCRIPTION FACTOR B SUBUNIT 1, REMARK 210 90% H2O/10% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N] TRANSCRIPTION REMARK 210 FACTOR P65, 2 MM RNA POLYMERASE REMARK 210 II TRANSCRIPTION FACTOR B SUBUNIT REMARK 210 1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 INTERMOLECULAR NOESY; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.21, NMRDRAW, VNMR, REMARK 210 NMRPIPE, PSVS, CCPNMR 2.3.1, REMARK 210 TALOS N REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 260 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 27 O VAL A 40 1.57 REMARK 500 O GLN A 49 H ARG A 61 1.58 REMARK 500 H ASN A 19 O GLU A 26 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 -10.81 69.06 REMARK 500 1 ASP A 21 -1.32 77.50 REMARK 500 1 LYS A 70 35.30 -84.16 REMARK 500 1 ALA A 114 49.46 -90.47 REMARK 500 1 SER B 520 76.08 55.22 REMARK 500 1 PRO B 524 -158.40 -79.39 REMARK 500 1 ILE B 549 -62.75 71.87 REMARK 500 2 HIS A 3 -12.45 70.44 REMARK 500 2 ASP A 21 -2.10 76.16 REMARK 500 2 LYS A 70 39.05 -86.85 REMARK 500 2 ALA A 114 62.69 -113.29 REMARK 500 2 PRO B 521 47.53 -77.23 REMARK 500 2 LEU B 528 47.64 -79.37 REMARK 500 2 SER B 529 -58.59 178.75 REMARK 500 3 HIS A 3 -0.10 64.12 REMARK 500 3 ASP A 21 -5.97 81.07 REMARK 500 3 GLU A 79 92.68 -69.02 REMARK 500 3 TYR A 111 32.97 -86.99 REMARK 500 3 ALA A 114 61.01 -106.41 REMARK 500 3 SER B 529 -47.91 -143.32 REMARK 500 3 ASP B 531 40.39 -142.25 REMARK 500 3 ASP B 533 -62.63 -96.76 REMARK 500 4 HIS A 3 -9.23 70.11 REMARK 500 4 LYS A 11 -0.12 68.52 REMARK 500 4 ASP A 21 -2.56 76.80 REMARK 500 4 ALA A 114 54.73 -105.89 REMARK 500 4 PRO B 521 41.71 -76.27 REMARK 500 4 ASN B 525 79.56 63.80 REMARK 500 4 SER B 529 60.33 -161.02 REMARK 500 5 HIS A 3 -11.29 65.53 REMARK 500 5 ASP A 21 -6.12 80.96 REMARK 500 5 LYS A 70 33.30 -86.43 REMARK 500 5 SER B 529 -47.62 -151.62 REMARK 500 6 HIS A 3 -0.32 64.65 REMARK 500 6 ASP A 21 -2.25 78.97 REMARK 500 6 LYS A 70 32.65 -78.65 REMARK 500 6 ALA A 114 55.49 -95.17 REMARK 500 6 SER B 529 63.57 60.85 REMARK 500 6 ASP B 531 -41.55 -158.25 REMARK 500 6 SER B 547 33.38 -96.96 REMARK 500 6 GLN B 548 44.80 -76.80 REMARK 500 7 SER A 2 105.79 -160.04 REMARK 500 7 ASP A 21 -4.59 78.21 REMARK 500 7 LYS A 70 40.14 -81.39 REMARK 500 7 SER B 529 -31.99 -172.69 REMARK 500 8 HIS A 3 -3.21 65.07 REMARK 500 8 ASP A 21 -2.23 76.70 REMARK 500 8 LYS A 70 40.49 -76.41 REMARK 500 8 PRO B 521 46.02 -77.73 REMARK 500 8 TYR B 523 93.73 60.23 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 23 PRO A 24 1 -143.18 REMARK 500 SER A 23 PRO A 24 2 -140.78 REMARK 500 SER A 23 PRO A 24 3 -143.04 REMARK 500 SER A 23 PRO A 24 4 -141.68 REMARK 500 SER A 23 PRO A 24 5 -143.06 REMARK 500 SER A 23 PRO A 24 6 -144.30 REMARK 500 SER A 23 PRO A 24 7 -145.16 REMARK 500 SER A 23 PRO A 24 8 -143.16 REMARK 500 SER A 23 PRO A 24 9 -143.90 REMARK 500 SER A 23 PRO A 24 10 -142.69 REMARK 500 SER A 23 PRO A 24 11 -141.91 REMARK 500 SER A 23 PRO A 24 12 -145.24 REMARK 500 SER A 23 PRO A 24 13 -141.52 REMARK 500 SER A 23 PRO A 24 14 -145.26 REMARK 500 SER A 23 PRO A 24 15 -143.74 REMARK 500 SER A 23 PRO A 24 16 -145.93 REMARK 500 SER A 23 PRO A 24 17 -137.64 REMARK 500 SER A 23 PRO A 24 18 -141.93 REMARK 500 SER A 23 PRO A 24 19 -146.59 REMARK 500 SER A 23 PRO A 24 20 -140.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6225 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS OF FREE TFB1 REMARK 900 RELATED ID: 1Y5O RELATED DB: PDB REMARK 900 NMR STRUCTURE OF FREE TFB1 REMARK 900 RELATED ID: 2GS0 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TFB1 IN COMPLEX WITH ACTIVATION DOMAIN OF REMARK 900 P53 REMARK 900 RELATED ID: 2K2U RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TFB1 IN COMPLEX WITH ACTIVATION DOMAIN OF REMARK 900 VP16 REMARK 900 RELATED ID: 2L2I RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TFB1 IN COMPLEX WITH ACTIVATION DOMAIN OF REMARK 900 EKLF REMARK 900 RELATED ID: 2LOX RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TFB1 IN COMPLEX WITH RAD2 REMARK 900 RELATED ID: 2M14 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TFB1 IN COMPLEX WITH RAD4 REMARK 900 RELATED ID: 2MKR RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TFB1 IN COMPLEX WITH THE TRANSACTIVATION REMARK 900 DOMAIN OF EBNA2 REMARK 900 RELATED ID: P32776 RELATED DB: SP REMARK 900 RELATED ID: NP_010597 RELATED DB: REF REMARK 900 RELATED ID: 25583 RELATED DB: BMRB REMARK 900 RELATED ID: 2N23 RELATED DB: PDB DBREF 2N22 A 2 115 UNP P32776 TFB1_YEAST 2 115 DBREF 2N22 B 521 551 UNP Q04206 TF65_HUMAN 521 551 SEQADV 2N22 PRO A 1 UNP P32776 EXPRESSION TAG SEQADV 2N22 GLY B 519 UNP Q04206 EXPRESSION TAG SEQADV 2N22 SER B 520 UNP Q04206 EXPRESSION TAG SEQADV 2N22 TYR B 523 UNP Q04206 LEU 523 ENGINEERED MUTATION SEQRES 1 A 115 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 115 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 115 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 115 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 115 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 115 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 115 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 115 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 115 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP SEQRES 1 B 33 GLY SER PRO GLY TYR PRO ASN GLY LEU LEU SER GLY ASP SEQRES 2 B 33 GLU ASP PHE SER SER ILE ALA ASP MET ASP PHE SER ALA SEQRES 3 B 33 LEU LEU SER GLN ILE SER SER HELIX 1 1 ASP A 67 LYS A 71 5 5 HELIX 2 2 ASN A 93 ALA A 114 1 22 HELIX 3 3 ASP B 531 SER B 535 5 5 HELIX 4 4 SER B 536 SER B 547 1 12 SHEET 1 A 7 VAL A 37 VAL A 41 0 SHEET 2 A 7 GLU A 26 SER A 31 -1 N TRP A 29 O HIS A 38 SHEET 3 A 7 VAL A 12 ASN A 19 -1 N ALA A 17 O THR A 28 SHEET 4 A 7 SER A 4 PHE A 9 -1 N GLY A 5 O ILE A 16 SHEET 5 A 7 ARG A 86 SER A 90 -1 O SER A 90 N ILE A 8 SHEET 6 A 7 MET A 59 GLY A 64 -1 N LEU A 62 O HIS A 87 SHEET 7 A 7 ILE A 45 ALA A 50 -1 N GLN A 49 O ARG A 61 SHEET 1 B 2 ARG A 72 LYS A 73 0 SHEET 2 B 2 GLU A 79 VAL A 80 -1 O VAL A 80 N ARG A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1