HEADER PROTEIN BINDING 26-MAY-15 2N3A TITLE SOLUTION STRUCTURE OF LEDGF/P75 IBD IN COMPLEX WITH POGZ PEPTIDE TITLE 2 (1389-1404) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POGO TRANSPOSABLE ELEMENT WITH ZNF DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1389-1404; COMPND 5 SYNONYM: SUPPRESSOR OF HAIRY WING HOMOLOG 5, ZINC FINGER PROTEIN COMPND 6 280E, ZINC FINGER PROTEIN 635; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 348-426; COMPND 12 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7, DENSE FINE SPECKLES 70 KDA COMPND 13 PROTEIN, DFS 70, LENS EPITHELIUM-DERIVED GROWTH FACTOR, COMPND 14 TRANSCRIPTIONAL COACTIVATOR P75/P52; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: PSIP1, DFS70, LEDGF, PSIP2; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LEDGF/P75, POGZ, H3K36ME3, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR P.TESINA,K.CERMAKOVA,M.HOREJSI,K.PROCHAZKOVA,M.FABRY,S.SHARMA, AUTHOR 2 F.CHRIST,J.DEMEULEMEESTER,Z.DEBYSER,J.DE RIJCK,V.VEVERKA,P.REZACOVA REVDAT 2 01-MAY-24 2N3A 1 REMARK REVDAT 1 19-AUG-15 2N3A 0 JRNL AUTH P.TESINA,K.CERMAKOVA,M.HOREJSI,K.PROCHAZKOVA,M.FABRY, JRNL AUTH 2 S.SHARMA,F.CHRIST,J.DEMEULEMEESTER,Z.DEBYSER,J.D.RIJCK, JRNL AUTH 3 V.VEVERKA,P.REZACOVA JRNL TITL MULTIPLE CELLULAR PROTEINS INTERACT WITH LEDGF/P75 THROUGH A JRNL TITL 2 CONSERVED UNSTRUCTURED CONSENSUS MOTIF. JRNL REF NAT COMMUN V. 6 7968 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26245978 JRNL DOI 10.1038/NCOMMS8968 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, YASARA, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), YASARA (YASARA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000104367. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM PEPTIDE, 0.5 MM [U-13C; U REMARK 210 -15N] PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 ARG B 372 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG B 405 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 12 ARG B 372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG B 354 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG B 372 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 13 ARG B 405 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 29 ARG B 372 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 29 ARG B 404 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A1396 -141.32 49.17 REMARK 500 1 ALA A1403 -2.64 59.34 REMARK 500 1 ASN B 367 73.74 -154.99 REMARK 500 1 PHE B 406 109.82 -52.56 REMARK 500 2 LEU B 363 45.68 -103.47 REMARK 500 2 ASN B 367 95.23 -177.54 REMARK 500 2 HIS B 393 50.31 -119.33 REMARK 500 2 LYS B 424 6.78 -68.12 REMARK 500 3 SER A1392 -22.27 -152.79 REMARK 500 3 GLU A1401 163.67 69.25 REMARK 500 3 ASN B 367 59.47 -162.13 REMARK 500 3 HIS B 393 53.88 -109.56 REMARK 500 3 ASN B 425 73.29 -103.62 REMARK 500 4 GLU A1391 -48.50 -153.87 REMARK 500 4 GLU A1395 123.17 64.04 REMARK 500 4 GLU A1401 -179.47 88.19 REMARK 500 5 SER A1392 -39.57 -163.18 REMARK 500 5 GLU A1393 163.93 62.25 REMARK 500 5 PHE A1400 77.08 56.94 REMARK 500 5 GLU A1401 -11.21 69.47 REMARK 500 5 ASN B 367 147.87 178.32 REMARK 500 5 HIS B 393 55.58 -119.04 REMARK 500 5 ARG B 404 -8.13 -57.92 REMARK 500 6 GLU A1401 39.47 -80.72 REMARK 500 6 GLU A1402 -17.39 60.82 REMARK 500 6 PHE B 406 72.70 -69.93 REMARK 500 6 ASN B 425 40.46 -83.48 REMARK 500 7 PHE A1400 29.87 -142.61 REMARK 500 7 ASN B 367 68.77 -153.97 REMARK 500 8 SER A1396 20.43 -142.76 REMARK 500 8 HIS B 393 51.60 -119.66 REMARK 500 8 ASN B 425 40.64 -108.97 REMARK 500 9 GLU A1401 -53.22 -146.01 REMARK 500 9 ASN B 367 124.08 171.68 REMARK 500 9 HIS B 393 43.53 -101.75 REMARK 500 9 PHE B 406 90.24 -62.28 REMARK 500 9 ASN B 425 69.66 -110.10 REMARK 500 10 SER A1396 -109.21 -139.37 REMARK 500 10 ASN B 425 100.43 62.07 REMARK 500 11 THR A1394 81.96 12.83 REMARK 500 11 GLU A1395 84.06 33.21 REMARK 500 11 PHE A1397 65.66 -154.57 REMARK 500 11 ASN B 367 81.27 -164.12 REMARK 500 11 HIS B 393 37.41 -84.92 REMARK 500 11 LYS B 424 5.78 -66.95 REMARK 500 12 SER A1392 37.38 -168.34 REMARK 500 12 ASN B 367 74.58 -175.74 REMARK 500 13 THR A1394 -27.67 -143.07 REMARK 500 13 PHE B 406 72.16 -66.43 REMARK 500 14 ASN B 367 113.39 -163.60 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25639 RELATED DB: BMRB DBREF 2N3A A 1389 1404 UNP Q7Z3K3 POGZ_HUMAN 1389 1404 DBREF 2N3A B 348 426 UNP O75475 PSIP1_HUMAN 348 426 SEQRES 1 A 16 GLU GLY GLU SER GLU THR GLU SER PHE TYR GLY PHE GLU SEQRES 2 A 16 GLU ALA ASP SEQRES 1 B 79 MET ASP SER ARG LEU GLN ARG ILE HIS ALA GLU ILE LYS SEQRES 2 B 79 ASN SER LEU LYS ILE ASP ASN LEU ASP VAL ASN ARG CYS SEQRES 3 B 79 ILE GLU ALA LEU ASP GLU LEU ALA SER LEU GLN VAL THR SEQRES 4 B 79 MET GLN GLN ALA GLN LYS HIS THR GLU MET ILE THR THR SEQRES 5 B 79 LEU LYS LYS ILE ARG ARG PHE LYS VAL SER GLN VAL ILE SEQRES 6 B 79 MET GLU LYS SER THR MET LEU TYR ASN LYS PHE LYS ASN SEQRES 7 B 79 MET HELIX 1 1 ASP B 349 LEU B 363 1 15 HELIX 2 2 ASP B 369 LEU B 383 1 15 HELIX 3 3 THR B 386 HIS B 393 1 8 HELIX 4 4 HIS B 393 ARG B 404 1 12 HELIX 5 5 SER B 409 ASN B 425 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1