HEADER RNA BINDING PROTEIN 29-MAY-15 2N3G TITLE SOLUTION STRUCTURE OF DRB4 DSRBD1 (VIZ. DRB4(1-72)) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE-STRANDED RNA-BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DRBM 1 DOMAIN RESIDUES 1-72; COMPND 5 SYNONYM: DSRNA-BINDING PROTEIN 4, ATDRB4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DBR4, AT3G62800, F26K9.230; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-30A KEYWDS RNAI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.DESHMUKH,S.CHILIVERI REVDAT 6 15-MAY-24 2N3G 1 REMARK REVDAT 5 14-JUN-23 2N3G 1 REMARK REVDAT 4 14-FEB-18 2N3G 1 JRNL REVDAT 3 07-JUN-17 2N3G 1 JRNL REVDAT 2 09-NOV-16 2N3G 1 DBREF SEQRES REVDAT 1 07-SEP-16 2N3G 0 JRNL AUTH S.C.CHILIVERI,R.AUTE,U.RAI,M.V.DESHMUKH JRNL TITL DRB4 DSRBD1 DRIVES DSRNA RECOGNITION IN ARABIDOPSIS THALIANA JRNL TITL 2 TASI/SIRNA PATHWAY. JRNL REF NUCLEIC ACIDS RES. V. 45 8551 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28575480 JRNL DOI 10.1093/NAR/GKX481 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1.6, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000104373. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500 UM [U-100% 15N] DRB4(1-72), REMARK 210 90% H2O/10% D2O; 500 UM [U-100% REMARK 210 13C; U-100% 15N] DRB4(1-72), 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D H(CCO)NH- REMARK 210 TOCSY; 3D (H)C(CO)NH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1.6, CARA 1.8.4, REMARK 210 SPARKY, PROCHECKNMR 3.5.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 PRO A 73 REMARK 465 GLN A 74 REMARK 465 SER A 75 REMARK 465 PRO A 76 REMARK 465 GLU A 77 REMARK 465 GLY A 78 REMARK 465 ILE A 79 REMARK 465 ASP A 80 REMARK 465 VAL A 81 REMARK 465 ALA A 82 REMARK 465 TYR A 83 REMARK 465 LYS A 84 REMARK 465 ASN A 85 REMARK 465 LEU A 86 REMARK 465 LEU A 87 REMARK 465 GLN A 88 REMARK 465 GLU A 89 REMARK 465 ILE A 90 REMARK 465 ALA A 91 REMARK 465 GLN A 92 REMARK 465 LYS A 93 REMARK 465 GLU A 94 REMARK 465 SER A 95 REMARK 465 SER A 96 REMARK 465 LEU A 97 REMARK 465 LEU A 98 REMARK 465 PRO A 99 REMARK 465 PHE A 100 REMARK 465 TYR A 101 REMARK 465 ALA A 102 REMARK 465 THR A 103 REMARK 465 ALA A 104 REMARK 465 THR A 105 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 PRO A 108 REMARK 465 SER A 109 REMARK 465 HIS A 110 REMARK 465 ALA A 111 REMARK 465 PRO A 112 REMARK 465 THR A 113 REMARK 465 PHE A 114 REMARK 465 THR A 115 REMARK 465 SER A 116 REMARK 465 THR A 117 REMARK 465 VAL A 118 REMARK 465 GLU A 119 REMARK 465 PHE A 120 REMARK 465 ALA A 121 REMARK 465 GLY A 122 REMARK 465 LYS A 123 REMARK 465 VAL A 124 REMARK 465 PHE A 125 REMARK 465 SER A 126 REMARK 465 GLY A 127 REMARK 465 GLU A 128 REMARK 465 GLU A 129 REMARK 465 ALA A 130 REMARK 465 LYS A 131 REMARK 465 THR A 132 REMARK 465 LYS A 133 REMARK 465 LYS A 134 REMARK 465 LEU A 135 REMARK 465 ALA A 136 REMARK 465 GLU A 137 REMARK 465 MET A 138 REMARK 465 SER A 139 REMARK 465 ALA A 140 REMARK 465 ALA A 141 REMARK 465 LYS A 142 REMARK 465 VAL A 143 REMARK 465 ALA A 144 REMARK 465 PHE A 145 REMARK 465 MET A 146 REMARK 465 SER A 147 REMARK 465 ILE A 148 REMARK 465 LYS A 149 REMARK 465 ASN A 150 REMARK 465 GLY A 151 REMARK 465 ASN A 152 REMARK 465 SER A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 17 66.00 62.91 REMARK 500 1 PRO A 30 166.42 -43.48 REMARK 500 2 HIS A 3 43.59 -159.34 REMARK 500 2 PRO A 30 165.94 -43.83 REMARK 500 3 PRO A 30 165.01 -43.88 REMARK 500 4 HIS A 3 59.12 -167.26 REMARK 500 4 ASN A 17 67.12 60.72 REMARK 500 4 PRO A 30 162.87 -42.49 REMARK 500 5 PRO A 30 166.37 -44.10 REMARK 500 6 GLU A 19 152.64 -41.72 REMARK 500 6 PRO A 30 160.27 -44.71 REMARK 500 7 HIS A 3 30.89 -145.35 REMARK 500 7 PRO A 30 162.93 -43.79 REMARK 500 8 ASP A 2 -111.10 42.20 REMARK 500 8 PRO A 30 166.64 -42.92 REMARK 500 9 LEU A 20 151.42 -45.81 REMARK 500 10 ASP A 2 -94.30 41.76 REMARK 500 12 HIS A 3 35.52 -151.53 REMARK 500 12 ASN A 17 65.83 60.49 REMARK 500 12 PRO A 30 159.92 -45.85 REMARK 500 13 HIS A 3 -95.84 -139.12 REMARK 500 13 ASN A 17 67.13 62.36 REMARK 500 13 PRO A 30 165.50 -44.10 REMARK 500 14 GLU A 19 151.54 -41.30 REMARK 500 14 PRO A 30 160.92 -45.19 REMARK 500 15 HIS A 3 42.37 39.08 REMARK 500 15 ASN A 17 66.62 62.98 REMARK 500 15 PRO A 30 164.94 -43.88 REMARK 500 16 GLU A 28 105.95 -162.78 REMARK 500 16 PRO A 30 155.70 -45.06 REMARK 500 17 HIS A 3 73.85 -69.12 REMARK 500 17 ASN A 17 67.37 64.54 REMARK 500 17 PRO A 30 167.14 -43.44 REMARK 500 18 HIS A 3 85.24 45.11 REMARK 500 18 LEU A 20 150.02 -48.51 REMARK 500 18 GLU A 28 108.45 -165.01 REMARK 500 19 PRO A 30 167.68 -43.67 REMARK 500 20 ASN A 17 65.32 61.30 REMARK 500 20 GLU A 28 109.81 -164.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25138 RELATED DB: BMRB REMARK 900 RELATED ID: 2N3F RELATED DB: PDB REMARK 900 RELATED ID: 2N3H RELATED DB: PDB DBREF 2N3G A 1 72 UNP Q8H1D4 DRB4_ARATH 1 72 SEQRES 1 A 153 MET ASP HIS VAL TYR LYS GLY GLN LEU GLN ALA TYR ALA SEQRES 2 A 153 LEU GLN HIS ASN LEU GLU LEU PRO VAL TYR ALA ASN GLU SEQRES 3 A 153 ARG GLU GLY PRO PRO HIS ALA PRO ARG PHE ARG CYS ASN SEQRES 4 A 153 VAL THR PHE CYS GLY GLN THR PHE GLN SER SER GLU PHE SEQRES 5 A 153 PHE PRO THR LEU LYS SER ALA GLU HIS ALA ALA ALA LYS SEQRES 6 A 153 ILE ALA VAL ALA SER LEU THR PRO GLN SER PRO GLU GLY SEQRES 7 A 153 ILE ASP VAL ALA TYR LYS ASN LEU LEU GLN GLU ILE ALA SEQRES 8 A 153 GLN LYS GLU SER SER LEU LEU PRO PHE TYR ALA THR ALA SEQRES 9 A 153 THR SER GLY PRO SER HIS ALA PRO THR PHE THR SER THR SEQRES 10 A 153 VAL GLU PHE ALA GLY LYS VAL PHE SER GLY GLU GLU ALA SEQRES 11 A 153 LYS THR LYS LYS LEU ALA GLU MET SER ALA ALA LYS VAL SEQRES 12 A 153 ALA PHE MET SER ILE LYS ASN GLY ASN SER HELIX 1 1 VAL A 4 ASN A 17 1 14 HELIX 2 2 THR A 55 THR A 72 1 18 SHEET 1 A 3 VAL A 22 ARG A 27 0 SHEET 2 A 3 ARG A 35 PHE A 42 -1 O THR A 41 N ARG A 27 SHEET 3 A 3 GLN A 45 PHE A 47 -1 O GLN A 45 N PHE A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1