data_2N3O # _entry.id 2N3O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104381 RCSB ? ? 2N3O PDB pdb_00002n3o 10.2210/pdb2n3o/pdb 25652 BMRB ? 10.13018/BMR25652 D_1000104381 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-10 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_nmr_software 5 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_nmr_software.name' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N3O _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-06-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2AD9 PDB 'NMR structure of PTB RRM1(49-146) bound to single-stranded CUCUCU RNA' unspecified 1SJQ PDB 'NMR structure of PTB RRM1 (54-147) in the free state' unspecified 25652 BMRB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maris, C.' 1 'Jayne, S.F.' 2 'Damberger, F.F.' 3 'Ravindranathan, S.' 4 'Allain, F.H.-T.' 5 # _citation.id primary _citation.title ;C-terminal helix folding upon pyrimidine-rich hairpin binding to PTB RRM1. Implications for PTB function in Encephalomyocarditis virus IRES activity. ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maris, C.' 1 ? primary 'Jayne, S.F.' 2 ? primary 'Damberger, F.F.' 3 ? primary 'Ravindranathan, S.' 4 ? primary 'Allain, F.H.-T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polypyrimidine tract-binding protein 1' 13375.167 1 ? ? 'UNP residues 41-163' ? 2 polymer syn ;RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*GP*GP*UP*CP*UP*UP*UP*CP*CP*AP*GP*GP*UP*CP*CP*C)-3') ; 7308.343 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PTB, 57 kDa RNA-binding protein PPTB-1, Heterogeneous nuclear ribonucleoprotein I, hnRNP I' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA ; ;GNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA ; A ? 2 polyribonucleotide no no GGGACCUGGUCUUUCCAGGUCCC GGGACCUGGUCUUUCCAGGUCCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ASP n 1 4 SER n 1 5 LYS n 1 6 LYS n 1 7 PHE n 1 8 LYS n 1 9 GLY n 1 10 ASP n 1 11 SER n 1 12 ARG n 1 13 SER n 1 14 ALA n 1 15 GLY n 1 16 VAL n 1 17 PRO n 1 18 SER n 1 19 ARG n 1 20 VAL n 1 21 ILE n 1 22 HIS n 1 23 ILE n 1 24 ARG n 1 25 LYS n 1 26 LEU n 1 27 PRO n 1 28 ILE n 1 29 ASP n 1 30 VAL n 1 31 THR n 1 32 GLU n 1 33 GLY n 1 34 GLU n 1 35 VAL n 1 36 ILE n 1 37 SER n 1 38 LEU n 1 39 GLY n 1 40 LEU n 1 41 PRO n 1 42 PHE n 1 43 GLY n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 ASN n 1 48 LEU n 1 49 LEU n 1 50 MET n 1 51 LEU n 1 52 LYS n 1 53 GLY n 1 54 LYS n 1 55 ASN n 1 56 GLN n 1 57 ALA n 1 58 PHE n 1 59 ILE n 1 60 GLU n 1 61 MET n 1 62 ASN n 1 63 THR n 1 64 GLU n 1 65 GLU n 1 66 ALA n 1 67 ALA n 1 68 ASN n 1 69 THR n 1 70 MET n 1 71 VAL n 1 72 ASN n 1 73 TYR n 1 74 TYR n 1 75 THR n 1 76 SER n 1 77 VAL n 1 78 THR n 1 79 PRO n 1 80 VAL n 1 81 LEU n 1 82 ARG n 1 83 GLY n 1 84 GLN n 1 85 PRO n 1 86 ILE n 1 87 TYR n 1 88 ILE n 1 89 GLN n 1 90 PHE n 1 91 SER n 1 92 ASN n 1 93 HIS n 1 94 LYS n 1 95 GLU n 1 96 LEU n 1 97 LYS n 1 98 THR n 1 99 ASP n 1 100 SER n 1 101 SER n 1 102 PRO n 1 103 ASN n 1 104 GLN n 1 105 ALA n 1 106 ARG n 1 107 ALA n 1 108 GLN n 1 109 ALA n 1 110 ALA n 1 111 LEU n 1 112 GLN n 1 113 ALA n 1 114 VAL n 1 115 ASN n 1 116 SER n 1 117 VAL n 1 118 GLN n 1 119 SER n 1 120 GLY n 1 121 ASN n 1 122 LEU n 1 123 ALA n 2 1 G n 2 2 G n 2 3 G n 2 4 A n 2 5 C n 2 6 C n 2 7 U n 2 8 G n 2 9 G n 2 10 U n 2 11 C n 2 12 U n 2 13 U n 2 14 U n 2 15 C n 2 16 C n 2 17 A n 2 18 G n 2 19 G n 2 20 U n 2 21 C n 2 22 C n 2 23 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PTB, PTBP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTYB11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 41 41 GLY GLY A . n A 1 2 ASN 2 42 42 ASN ASN A . n A 1 3 ASP 3 43 43 ASP ASP A . n A 1 4 SER 4 44 44 SER SER A . n A 1 5 LYS 5 45 45 LYS LYS A . n A 1 6 LYS 6 46 46 LYS LYS A . n A 1 7 PHE 7 47 47 PHE PHE A . n A 1 8 LYS 8 48 48 LYS LYS A . n A 1 9 GLY 9 49 49 GLY GLY A . n A 1 10 ASP 10 50 50 ASP ASP A . n A 1 11 SER 11 51 51 SER SER A . n A 1 12 ARG 12 52 52 ARG ARG A . n A 1 13 SER 13 53 53 SER SER A . n A 1 14 ALA 14 54 54 ALA ALA A . n A 1 15 GLY 15 55 55 GLY GLY A . n A 1 16 VAL 16 56 56 VAL VAL A . n A 1 17 PRO 17 57 57 PRO PRO A . n A 1 18 SER 18 58 58 SER SER A . n A 1 19 ARG 19 59 59 ARG ARG A . n A 1 20 VAL 20 60 60 VAL VAL A . n A 1 21 ILE 21 61 61 ILE ILE A . n A 1 22 HIS 22 62 62 HIS HIS A . n A 1 23 ILE 23 63 63 ILE ILE A . n A 1 24 ARG 24 64 64 ARG ARG A . n A 1 25 LYS 25 65 65 LYS LYS A . n A 1 26 LEU 26 66 66 LEU LEU A . n A 1 27 PRO 27 67 67 PRO PRO A . n A 1 28 ILE 28 68 68 ILE ILE A . n A 1 29 ASP 29 69 69 ASP ASP A . n A 1 30 VAL 30 70 70 VAL VAL A . n A 1 31 THR 31 71 71 THR THR A . n A 1 32 GLU 32 72 72 GLU GLU A . n A 1 33 GLY 33 73 73 GLY GLY A . n A 1 34 GLU 34 74 74 GLU GLU A . n A 1 35 VAL 35 75 75 VAL VAL A . n A 1 36 ILE 36 76 76 ILE ILE A . n A 1 37 SER 37 77 77 SER SER A . n A 1 38 LEU 38 78 78 LEU LEU A . n A 1 39 GLY 39 79 79 GLY GLY A . n A 1 40 LEU 40 80 80 LEU LEU A . n A 1 41 PRO 41 81 81 PRO PRO A . n A 1 42 PHE 42 82 82 PHE PHE A . n A 1 43 GLY 43 83 83 GLY GLY A . n A 1 44 LYS 44 84 84 LYS LYS A . n A 1 45 VAL 45 85 85 VAL VAL A . n A 1 46 THR 46 86 86 THR THR A . n A 1 47 ASN 47 87 87 ASN ASN A . n A 1 48 LEU 48 88 88 LEU LEU A . n A 1 49 LEU 49 89 89 LEU LEU A . n A 1 50 MET 50 90 90 MET MET A . n A 1 51 LEU 51 91 91 LEU LEU A . n A 1 52 LYS 52 92 92 LYS LYS A . n A 1 53 GLY 53 93 93 GLY GLY A . n A 1 54 LYS 54 94 94 LYS LYS A . n A 1 55 ASN 55 95 95 ASN ASN A . n A 1 56 GLN 56 96 96 GLN GLN A . n A 1 57 ALA 57 97 97 ALA ALA A . n A 1 58 PHE 58 98 98 PHE PHE A . n A 1 59 ILE 59 99 99 ILE ILE A . n A 1 60 GLU 60 100 100 GLU GLU A . n A 1 61 MET 61 101 101 MET MET A . n A 1 62 ASN 62 102 102 ASN ASN A . n A 1 63 THR 63 103 103 THR THR A . n A 1 64 GLU 64 104 104 GLU GLU A . n A 1 65 GLU 65 105 105 GLU GLU A . n A 1 66 ALA 66 106 106 ALA ALA A . n A 1 67 ALA 67 107 107 ALA ALA A . n A 1 68 ASN 68 108 108 ASN ASN A . n A 1 69 THR 69 109 109 THR THR A . n A 1 70 MET 70 110 110 MET MET A . n A 1 71 VAL 71 111 111 VAL VAL A . n A 1 72 ASN 72 112 112 ASN ASN A . n A 1 73 TYR 73 113 113 TYR TYR A . n A 1 74 TYR 74 114 114 TYR TYR A . n A 1 75 THR 75 115 115 THR THR A . n A 1 76 SER 76 116 116 SER SER A . n A 1 77 VAL 77 117 117 VAL VAL A . n A 1 78 THR 78 118 118 THR THR A . n A 1 79 PRO 79 119 119 PRO PRO A . n A 1 80 VAL 80 120 120 VAL VAL A . n A 1 81 LEU 81 121 121 LEU LEU A . n A 1 82 ARG 82 122 122 ARG ARG A . n A 1 83 GLY 83 123 123 GLY GLY A . n A 1 84 GLN 84 124 124 GLN GLN A . n A 1 85 PRO 85 125 125 PRO PRO A . n A 1 86 ILE 86 126 126 ILE ILE A . n A 1 87 TYR 87 127 127 TYR TYR A . n A 1 88 ILE 88 128 128 ILE ILE A . n A 1 89 GLN 89 129 129 GLN GLN A . n A 1 90 PHE 90 130 130 PHE PHE A . n A 1 91 SER 91 131 131 SER SER A . n A 1 92 ASN 92 132 132 ASN ASN A . n A 1 93 HIS 93 133 133 HIS HIS A . n A 1 94 LYS 94 134 134 LYS LYS A . n A 1 95 GLU 95 135 135 GLU GLU A . n A 1 96 LEU 96 136 136 LEU LEU A . n A 1 97 LYS 97 137 137 LYS LYS A . n A 1 98 THR 98 138 138 THR THR A . n A 1 99 ASP 99 139 139 ASP ASP A . n A 1 100 SER 100 140 140 SER SER A . n A 1 101 SER 101 141 141 SER SER A . n A 1 102 PRO 102 142 142 PRO PRO A . n A 1 103 ASN 103 143 143 ASN ASN A . n A 1 104 GLN 104 144 144 GLN GLN A . n A 1 105 ALA 105 145 145 ALA ALA A . n A 1 106 ARG 106 146 146 ARG ARG A . n A 1 107 ALA 107 147 147 ALA ALA A . n A 1 108 GLN 108 148 148 GLN GLN A . n A 1 109 ALA 109 149 149 ALA ALA A . n A 1 110 ALA 110 150 150 ALA ALA A . n A 1 111 LEU 111 151 151 LEU LEU A . n A 1 112 GLN 112 152 152 GLN GLN A . n A 1 113 ALA 113 153 153 ALA ALA A . n A 1 114 VAL 114 154 154 VAL VAL A . n A 1 115 ASN 115 155 155 ASN ASN A . n A 1 116 SER 116 156 156 SER SER A . n A 1 117 VAL 117 157 157 VAL VAL A . n A 1 118 GLN 118 158 158 GLN GLN A . n A 1 119 SER 119 159 159 SER SER A . n A 1 120 GLY 120 160 160 GLY GLY A . n A 1 121 ASN 121 161 161 ASN ASN A . n A 1 122 LEU 122 162 162 LEU LEU A . n A 1 123 ALA 123 163 163 ALA ALA A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 A 4 4 4 A A B . n B 2 5 C 5 5 5 C C B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 G 8 8 8 G G B . n B 2 9 G 9 9 9 G G B . n B 2 10 U 10 10 10 U U B . n B 2 11 C 11 11 11 C C B . n B 2 12 U 12 12 12 U U B . n B 2 13 U 13 13 13 U U B . n B 2 14 U 14 14 14 U U B . n B 2 15 C 15 15 15 C C B . n B 2 16 C 16 16 16 C C B . n B 2 17 A 17 17 17 A A B . n B 2 18 G 18 18 18 G G B . n B 2 19 G 19 19 19 G G B . n B 2 20 U 20 20 20 U U B . n B 2 21 C 21 21 21 C C B . n B 2 22 C 22 22 22 C C B . n B 2 23 C 23 23 23 C C B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N3O _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N3O _struct.title ;Structure of PTB RRM1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N3O _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'Polypyirimine tract binding protein, IRES, PTB, C-terminal helix formation, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PTBP1_HUMAN P26599 1 ;GNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA ; 41 ? 2 PDB 2N3O 2N3O 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2N3O A 1 ? 123 ? P26599 41 ? 163 ? 41 163 2 2 2N3O B 1 ? 23 ? 2N3O 1 ? 23 ? 1 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1610 ? 1 MORE -14 ? 1 'SSA (A^2)' 10580 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? LEU A 38 ? THR A 71 LEU A 78 1 ? 8 HELX_P HELX_P2 2 THR A 63 ? THR A 75 ? THR A 103 THR A 115 1 ? 13 HELX_P HELX_P3 3 ASN A 103 ? VAL A 114 ? ASN A 143 VAL A 154 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 23 N3 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 23 O2 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 3 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 3 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 3 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 20 N3 ? ? B A 4 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 20 O4 ? ? B A 4 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 6 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 6 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 6 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 17 N1 ? ? B U 7 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 17 N6 ? ? B U 7 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 8 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 8 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 8 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 9 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 9 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 9 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B U 10 N3 ? ? ? 1_555 B U 14 O4 ? ? B U 10 B U 14 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog27 hydrog ? ? B U 10 O2 ? ? ? 1_555 B U 14 N3 ? ? B U 10 B U 14 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 45 ? MET A 50 ? VAL A 85 MET A 90 A 2 GLN A 56 ? MET A 61 ? GLN A 96 MET A 101 A 3 VAL A 20 ? ARG A 24 ? VAL A 60 ARG A 64 A 4 TYR A 87 ? PHE A 90 ? TYR A 127 PHE A 130 B 1 VAL A 80 ? LEU A 81 ? VAL A 120 LEU A 121 B 2 GLN A 84 ? PRO A 85 ? GLN A 124 PRO A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 49 ? N LEU A 89 O PHE A 58 ? O PHE A 98 A 2 3 O ILE A 59 ? O ILE A 99 N ILE A 21 ? N ILE A 61 A 3 4 N HIS A 22 ? N HIS A 62 O GLN A 89 ? O GLN A 129 B 1 2 N LEU A 81 ? N LEU A 121 O GLN A 84 ? O GLN A 124 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.11 108.50 4.61 0.70 N 2 1 "C5'" B U 14 ? ? "C4'" B U 14 ? ? "C3'" B U 14 ? ? 106.12 115.20 -9.08 1.40 N 3 1 "C5'" B U 14 ? ? "C4'" B U 14 ? ? "O4'" B U 14 ? ? 115.62 109.80 5.82 0.90 N 4 2 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.27 108.50 4.77 0.70 N 5 2 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "C3'" B U 13 ? ? 104.57 115.20 -10.63 1.40 N 6 3 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.19 119.70 7.49 1.20 Y 7 5 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.35 119.70 7.65 1.20 Y 8 6 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.75 119.70 8.05 1.20 Y 9 7 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "C3'" B U 13 ? ? 105.65 115.20 -9.55 1.40 N 10 9 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.10 119.70 7.40 1.20 Y 11 9 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 115.49 109.80 5.69 0.90 N 12 10 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.73 119.70 8.03 1.20 Y 13 11 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.54 119.70 7.84 1.20 Y 14 11 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 115.55 109.80 5.75 0.90 N 15 12 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.47 108.50 4.97 0.70 N 16 12 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "C3'" B U 13 ? ? 105.83 115.20 -9.37 1.40 N 17 13 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.30 108.50 4.80 0.70 N 18 13 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 116.68 109.80 6.88 0.90 N 19 14 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.63 119.70 7.93 1.20 Y 20 14 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 115.28 108.50 6.78 0.70 N 21 15 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.65 119.70 7.95 1.20 Y 22 16 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.46 119.70 7.76 1.20 Y 23 17 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.35 119.70 7.65 1.20 Y 24 18 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 112.77 108.50 4.27 0.70 N 25 18 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.54 119.70 7.84 1.20 Y 26 19 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.54 119.70 7.84 1.20 Y 27 19 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 112.82 108.50 4.32 0.70 N 28 19 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.72 108.50 4.22 0.70 N 29 20 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.20 119.70 7.50 1.20 Y 30 20 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 115.35 109.80 5.55 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 91 ? ? -96.62 37.34 2 1 GLU A 135 ? ? 59.45 139.54 3 1 ASP A 139 ? ? -151.73 7.53 4 1 SER A 140 ? ? -142.14 -1.94 5 1 GLN A 158 ? ? 53.44 19.74 6 2 LYS A 46 ? ? -153.76 22.46 7 2 PHE A 47 ? ? -67.91 3.78 8 2 ALA A 54 ? ? 56.33 -176.56 9 2 ASP A 69 ? ? -69.07 4.78 10 2 SER A 116 ? ? -141.80 11.40 11 2 LYS A 137 ? ? -160.84 113.45 12 2 ASP A 139 ? ? -153.59 2.16 13 2 SER A 141 ? ? 59.96 138.06 14 2 VAL A 157 ? ? 62.86 145.06 15 3 ALA A 54 ? ? 56.40 -174.11 16 3 PRO A 67 ? ? -67.26 -177.26 17 3 LEU A 91 ? ? -96.90 37.62 18 3 ASN A 95 ? ? -85.37 49.03 19 3 LYS A 137 ? ? -162.40 112.27 20 3 ASP A 139 ? ? -157.72 -52.62 21 4 SER A 51 ? ? -68.79 2.65 22 4 ASN A 95 ? ? -92.36 47.23 23 4 ASP A 139 ? ? -149.62 -23.71 24 4 SER A 140 ? ? -154.47 64.59 25 5 ASN A 42 ? ? -146.29 16.33 26 5 SER A 44 ? ? 54.54 -147.96 27 5 ASP A 50 ? ? 60.72 169.03 28 5 SER A 51 ? ? -149.73 12.77 29 5 LYS A 65 ? ? 58.69 17.05 30 5 LEU A 91 ? ? -93.73 49.48 31 5 ASP A 139 ? ? -160.27 -55.26 32 6 LYS A 46 ? ? -69.52 3.15 33 6 PHE A 47 ? ? -58.32 -5.90 34 6 SER A 140 ? ? 59.95 -66.41 35 6 SER A 159 ? ? 59.02 171.69 36 8 ASP A 43 ? ? 58.31 12.44 37 8 PHE A 47 ? ? -69.50 10.83 38 8 LEU A 91 ? ? -97.62 43.19 39 8 SER A 141 ? ? 62.15 138.97 40 8 SER A 156 ? ? 60.74 170.38 41 8 SER A 159 ? ? 58.47 176.45 42 9 PHE A 47 ? ? -64.77 1.11 43 9 LYS A 134 ? ? -67.90 -174.40 44 9 GLU A 135 ? ? -49.84 159.98 45 9 ASP A 139 ? ? -142.49 -1.29 46 10 ASN A 42 ? ? -148.65 13.00 47 10 LYS A 46 ? ? -154.13 -14.82 48 10 LYS A 65 ? ? 59.84 18.18 49 10 ASN A 95 ? ? -100.53 54.62 50 10 LYS A 134 ? ? 59.32 -168.50 51 10 ASP A 139 ? ? -164.76 -43.17 52 10 SER A 156 ? ? 60.02 175.52 53 11 LYS A 45 ? ? -75.69 25.43 54 11 LYS A 46 ? ? -66.84 0.10 55 11 LEU A 91 ? ? -102.35 43.75 56 11 LYS A 92 ? ? -61.27 0.87 57 11 ASN A 95 ? ? -93.39 52.75 58 11 SER A 140 ? ? 59.28 -73.25 59 12 ASP A 43 ? ? 62.42 124.73 60 12 PHE A 47 ? ? -69.15 1.31 61 12 ARG A 59 ? ? -89.73 42.08 62 12 LEU A 91 ? ? -97.47 37.55 63 12 LYS A 137 ? ? -161.08 115.57 64 12 ASP A 139 ? ? -142.82 -43.66 65 12 SER A 141 ? ? -173.86 145.99 66 12 VAL A 157 ? ? 55.00 7.75 67 13 ARG A 52 ? ? -141.44 15.70 68 13 LYS A 94 ? ? -151.49 -157.77 69 13 ASN A 95 ? ? -113.16 61.63 70 13 ASP A 139 ? ? -157.88 9.35 71 13 SER A 140 ? ? -153.37 6.25 72 13 SER A 159 ? ? 49.40 26.47 73 14 ASN A 95 ? ? -107.45 65.70 74 14 SER A 116 ? ? -141.25 11.58 75 14 SER A 140 ? ? -164.30 -40.68 76 14 ASN A 161 ? ? 49.08 20.81 77 15 TYR A 114 ? ? -68.88 3.04 78 15 ARG A 122 ? ? 58.18 19.82 79 15 SER A 140 ? ? -151.80 3.41 80 15 ARG A 146 ? ? -140.01 -34.01 81 16 PHE A 47 ? ? -68.79 3.40 82 16 ASN A 95 ? ? -102.63 49.78 83 16 PHE A 130 ? ? -59.70 174.56 84 16 SER A 141 ? ? 62.50 133.94 85 16 SER A 156 ? ? 57.70 15.54 86 17 ALA A 54 ? ? 58.12 173.76 87 17 LEU A 91 ? ? -108.97 40.97 88 17 ASN A 95 ? ? -83.56 40.61 89 17 SER A 140 ? ? 61.31 -36.97 90 17 SER A 156 ? ? 56.79 15.00 91 17 SER A 159 ? ? 58.48 176.69 92 18 SER A 44 ? ? 57.52 18.80 93 18 ASP A 69 ? ? -68.13 8.48 94 18 LEU A 91 ? ? -97.76 53.86 95 18 SER A 141 ? ? 61.10 134.02 96 19 PHE A 47 ? ? 59.74 154.67 97 19 PRO A 57 ? ? -70.65 28.15 98 19 LEU A 91 ? ? -97.63 50.46 99 19 LYS A 92 ? ? -59.33 -5.23 100 19 ASN A 95 ? ? -85.02 49.32 101 19 ASP A 139 ? ? -137.19 -61.94 102 20 LEU A 91 ? ? -102.12 43.37 103 20 ASN A 95 ? ? -84.59 47.19 104 20 SER A 140 ? ? -164.78 -31.69 105 20 ARG A 146 ? ? -141.96 -26.38 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 G B 9 ? ? 0.054 'SIDE CHAIN' 2 5 U B 10 ? ? 0.069 'SIDE CHAIN' 3 6 U B 10 ? ? 0.071 'SIDE CHAIN' 4 8 C B 11 ? ? 0.061 'SIDE CHAIN' 5 11 U B 10 ? ? 0.066 'SIDE CHAIN' 6 12 U B 10 ? ? 0.061 'SIDE CHAIN' 7 17 TYR A 113 ? ? 0.076 'SIDE CHAIN' 8 20 U B 10 ? ? 0.065 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation 0 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 250 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N3O _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 4.72 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.29 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0 _pdbx_nmr_ensemble_rms.entry_id 2N3O _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N3O _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-99% 13C; U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 3 '100% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM [U-13C; U-15N]-ribose-Ura10,Ura12,Ura14 RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 4 '100% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 5 '100% D2O' '1 mM [U-99% 13C; U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 6 '100% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 13 mg/mL Pf1 phage, 90% H2O/10% D2O' 7 '90% H2O/10% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 13 mg/mL Pf1 phage, 100% D2O ; 8 '100% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 13 mg/mL Pf1 phage, 90% H2O/10% D2O ; 9 '90% H2O/10% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 10 '90% H2O/10% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-13C; U-15N]-ribose-Cyt9,Ura11,Ura13,Gua15 RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O ; 11 '100% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-13C; U-15N]-Ura7,Ura10,Cyt11,Ura12,Ura13,Ura14,Cyt15,Cyt16,Ura20,Cyt21,Cyt22,Cyt23 RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O ; 12 '100% D2O' '1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 13 '100% D2O' '1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 14 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id PTBRRM1-1 1 ? mM '[U-99% 15N]' 1 RNA 1 ? mM ? 1 'sodium phosphate-3' 10 ? mM ? 1 'sodium chloride-4' 20 ? mM ? 1 PTBRRM1-5 1 ? mM '[U-99% 13C; U-99% 15N]' 2 RNA 1 ? mM ? 2 'sodium phosphate-7' 10 ? mM ? 2 'sodium chloride-8' 20 ? mM ? 2 PTBRRM1-9 1 ? mM '[U-99% 15N]' 3 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 3 'sodium phosphate-11' 10 ? mM ? 3 'sodium chloride-12' 20 ? mM ? 3 PTBRRM1-13 1 ? mM '[U-99% 15N]' 4 RNA 1 ? mM '[U-13C; U-15N]-ribose-Ura10,Ura12,Ura14' 4 'sodium phosphate-15' 10 ? mM ? 4 'sodium chloride-16' 20 ? mM ? 4 PTBRRM1-17 1 ? mM '[U-99% 15N]' 5 RNA 1 ? mM ? 5 'sodium phosphate-19' 10 ? mM ? 5 'sodium chloride-20' 20 ? mM ? 5 PTBRRM1-21 1 ? mM '[U-99% 13C; U-99% 15N]' 6 RNA 1 ? mM ? 6 'sodium phosphate-23' 10 ? mM ? 6 'sodium chloride-24' 20 ? mM ? 6 PTBRRM1-25 1 ? mM '[U-99% 15N]' 7 RNA 1 ? mM ? 7 'sodium phosphate-27' 10 ? mM ? 7 'sodium chloride-28' 20 ? mM ? 7 'Pf1 phage-29' 13 ? mg/mL ? 7 PTBRRM1-30 1 ? mM '[U-99% 15N]' 8 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 8 'sodium phosphate-32' 10 ? mM ? 8 'sodium chloride-33' 20 ? mM ? 8 'Pf1 phage-34' 13 ? mg/mL ? 8 PTBRRM1-35 1 ? mM '[U-99% 15N]' 9 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 9 'sodium phosphate-37' 10 ? mM ? 9 'sodium chloride-38' 20 ? mM ? 9 'Pf1 phage-39' 13 ? mg/mL ? 9 PTBRRM1-40 1 ? mM '[U-99% 15N]' 10 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 10 'sodium phosphate-42' 10 ? mM ? 10 'sodium chloride-43' 20 ? mM ? 10 PTBRRM1-44 1 ? mM '[U-99% 15N]' 11 RNA 1 ? mM '[U-13C; U-15N]-ribose-Cyt9,Ura11,Ura13,Gua15' 11 'sodium phosphate-46' 10 ? mM ? 11 'sodium chloride-47' 20 ? mM ? 11 PTBRRM1-48 1 ? mM '[U-99% 15N]' 12 RNA 1 ? mM '[U-13C; U-15N]-Ura7,Ura10,Cyt11,Ura12,Ura13,Ura14,Cyt15,Cyt16,Ura20,Cyt21,Cyt22,Cyt23' 12 'sodium phosphate-50' 10 ? mM ? 12 'sodium chloride-51' 20 ? mM ? 12 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 13 'sodium phosphate-53' 10 ? mM ? 13 'sodium chloride-54' 20 ? mM ? 13 RNA 1 ? mM ? 14 'sodium phosphate-56' 10 ? mM ? 14 'sodium chloride-57' 20 ? mM ? 14 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.020 6.5 ambient ? 313 K 2 0.020 6.5 ambient ? 298 K 3 0.020 6.5 ambient ? 278 K 4 0.020 6.5 ambient ? 303 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '3D HNCA' 1 2 2 '3D HN(CO)CA' 1 3 2 '3D HNCACB' 1 4 2 '3D HNCO' 1 5 2 '3D HCCH-TOCSY' 1 6 2 '3D HCCH-TOCSY' 1 7 1 '3D 1H-15N NOESY-HSQC' 1 8 2 '3D 1H-13C NOESY aliphatic-HSQC' 1 9 2 '3D 1H-13C NOESY aromatic-HSQC' 1 10 5 '2D 1H-1H TOCSY' 1 11 5 '2D 1H-1H NOESY' 1 12 3 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 13 4 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 14 3 '2D f2-13C-filtered NOESY' 3 15 2 '3D aliphatic-HSQC-NOESY' 1 16 3 '2D H2C2 TROSY' 1 17 3 '2D H6C6 TROSY' 1 18 3 '2D H8C8 TROSY' 1 19 8 '2D H2C2 TROSY' 1 20 8 '2D H6C6 TROSY' 1 21 8 '2D H8C8 TROSY' 1 22 3 '2D H5C5 TROSY' 1 23 3 ;2D H1'C1' TROSY ; 1 24 8 '2D H5C5 TROSY' 1 25 8 ;2D H1'C1' TROSY ; 1 26 1 '2D HN TROSY' 1 27 7 '2D HN TROSY' 3 28 9 '2D HN TROSY' 3 29 9 '2D HN TROSY' 1 30 1 '2D {1H}15N-NOE HSQC' 3 31 1 '2D 1H-1H NOESY' 1 32 12 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 33 12 '3D 1H-13C NOESY aliphatic' 1 34 4 '3D 1H-13C NOESY aliphatic' 1 35 11 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 36 4 '2D 1H-13C HSQC aliphatic' 1 37 3 '2D 1H-13C HSQC aromatic' 1 38 3 '3D 1H-13C NOESY aliphatic' 1 39 5 '3D 1H-13C NOESY aromatic' 4 40 13 '3D 1H-13C NOESY aliphatic' 4 41 13 '3D 1H-13C NOESY aromatic' 1 42 11 '2D 1H-13C HSQC aliphatic' 3 43 14 '2D 1H-1H NOESY' # _pdbx_nmr_details.entry_id 2N3O _pdbx_nmr_details.text ;Standard 3D NOESYs measured with 150 msec mixing time. 2D NOESY with 200 msec mixing time. NOESYs measured at 5C were obtained using 3919-watergate sequence before detection. RNA Constraints for all base-paired nucleotides except the closing G9-C15 basepair of the loop were derived from NOESY spectra obtained with free RNA - the NOE patterns were the same as for the RNA in the complex but signal to noise was better. 3D NOESYs of unlabeled RNA were measured with 200 msec mixing time, and 2D NOESY of unlabeled RNA was measured with 250 msec mixing time. ; # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N3O _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 27 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 14 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 14 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 14 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 92 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 0 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 83 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 84 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count 23 _pdbx_nmr_constraints.NOE_constraints_total 2284 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 614 _pdbx_nmr_constraints.NOE_long_range_total_count 623 _pdbx_nmr_constraints.NOE_medium_range_total_count 381 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 574 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2N3O _pdbx_nmr_refine.method 'simulated annealing, simulated annealing' _pdbx_nmr_refine.details ;250 CONFORMERS WERE CALCULATED WITH CYANA USING THE DEPOSITED UPL AND ACO CONSTRAINT FILES. THE 50 CONFORMERS WITH THE LOWEST CYANA TARGET FUNCTION WERE SELECTED FOR REFINEMENT WITH AMBER. 50 CYANA CONFORMERS WERE REFINED WITH AMBER USING CONSTRAINTS DEFINED IN THE DEPOSITED RST FILE. THE REFINED CONFORMERS WERE THEN SORTED BY AMBER ENERGY. THE BEST 30 WERE PRESELECTED AND FROM THESE 30 THE 20 CONFORMERS WITH LOWEST VIOLATION ENERGY WERE SORTED AND DEPOSITED. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'chemical shift assignment' Sparky 3.114 1 Goddard 'peak picking' Sparky 3.114 2 'Herrmann, Guntert and Wuthrich' 'peak picking' UNIO/ATNOS-CANDID 10 3 'Herrmann, Guntert and Wuthrich' 'noe assignment' UNIO/ATNOS-CANDID 10 4 'Guntert, Mumenthaler and Wuthrich' 'chemical shift assignment' CYANA 3.0 5 'Guntert, Mumenthaler and Wuthrich' 'noe assignment' CYANA 3.0 6 'Guntert, Mumenthaler and Wuthrich' 'structure calculation' CYANA 3.0 7 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber 12 8 'Laskowski and MacArthur' validation ProcheckNMR 3.5.4 9 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL 2K.2 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TYR N N N N 414 TYR CA C N S 415 TYR C C N N 416 TYR O O N N 417 TYR CB C N N 418 TYR CG C Y N 419 TYR CD1 C Y N 420 TYR CD2 C Y N 421 TYR CE1 C Y N 422 TYR CE2 C Y N 423 TYR CZ C Y N 424 TYR OH O N N 425 TYR OXT O N N 426 TYR H H N N 427 TYR H2 H N N 428 TYR HA H N N 429 TYR HB2 H N N 430 TYR HB3 H N N 431 TYR HD1 H N N 432 TYR HD2 H N N 433 TYR HE1 H N N 434 TYR HE2 H N N 435 TYR HH H N N 436 TYR HXT H N N 437 U OP3 O N N 438 U P P N N 439 U OP1 O N N 440 U OP2 O N N 441 U "O5'" O N N 442 U "C5'" C N N 443 U "C4'" C N R 444 U "O4'" O N N 445 U "C3'" C N S 446 U "O3'" O N N 447 U "C2'" C N R 448 U "O2'" O N N 449 U "C1'" C N R 450 U N1 N N N 451 U C2 C N N 452 U O2 O N N 453 U N3 N N N 454 U C4 C N N 455 U O4 O N N 456 U C5 C N N 457 U C6 C N N 458 U HOP3 H N N 459 U HOP2 H N N 460 U "H5'" H N N 461 U "H5''" H N N 462 U "H4'" H N N 463 U "H3'" H N N 464 U "HO3'" H N N 465 U "H2'" H N N 466 U "HO2'" H N N 467 U "H1'" H N N 468 U H3 H N N 469 U H5 H N N 470 U H6 H N N 471 VAL N N N N 472 VAL CA C N S 473 VAL C C N N 474 VAL O O N N 475 VAL CB C N N 476 VAL CG1 C N N 477 VAL CG2 C N N 478 VAL OXT O N N 479 VAL H H N N 480 VAL H2 H N N 481 VAL HA H N N 482 VAL HB H N N 483 VAL HG11 H N N 484 VAL HG12 H N N 485 VAL HG13 H N N 486 VAL HG21 H N N 487 VAL HG22 H N N 488 VAL HG23 H N N 489 VAL HXT H N N 490 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 U OP3 P sing N N 430 U OP3 HOP3 sing N N 431 U P OP1 doub N N 432 U P OP2 sing N N 433 U P "O5'" sing N N 434 U OP2 HOP2 sing N N 435 U "O5'" "C5'" sing N N 436 U "C5'" "C4'" sing N N 437 U "C5'" "H5'" sing N N 438 U "C5'" "H5''" sing N N 439 U "C4'" "O4'" sing N N 440 U "C4'" "C3'" sing N N 441 U "C4'" "H4'" sing N N 442 U "O4'" "C1'" sing N N 443 U "C3'" "O3'" sing N N 444 U "C3'" "C2'" sing N N 445 U "C3'" "H3'" sing N N 446 U "O3'" "HO3'" sing N N 447 U "C2'" "O2'" sing N N 448 U "C2'" "C1'" sing N N 449 U "C2'" "H2'" sing N N 450 U "O2'" "HO2'" sing N N 451 U "C1'" N1 sing N N 452 U "C1'" "H1'" sing N N 453 U N1 C2 sing N N 454 U N1 C6 sing N N 455 U C2 O2 doub N N 456 U C2 N3 sing N N 457 U N3 C4 sing N N 458 U N3 H3 sing N N 459 U C4 O4 doub N N 460 U C4 C5 sing N N 461 U C5 C6 doub N N 462 U C5 H5 sing N N 463 U C6 H6 sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N3O 'a-form double helix' 2N3O 'hairpin loop' 2N3O 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 23 1_555 -0.264 -0.093 -0.507 -16.120 -4.844 -1.219 1 B_G1:C23_B B 1 ? B 23 ? 19 1 1 B G 2 1_555 B C 22 1_555 -0.285 -0.083 -0.249 -8.091 -4.382 -0.734 2 B_G2:C22_B B 2 ? B 22 ? 19 1 1 B G 3 1_555 B C 21 1_555 -0.402 -0.120 0.077 1.134 -6.281 -0.303 3 B_G3:C21_B B 3 ? B 21 ? 19 1 1 B A 4 1_555 B U 20 1_555 0.037 -0.040 -0.177 0.732 -14.357 -1.361 4 B_A4:U20_B B 4 ? B 20 ? 20 1 1 B C 5 1_555 B G 19 1_555 0.455 -0.130 0.050 0.438 -13.140 -0.177 5 B_C5:G19_B B 5 ? B 19 ? 19 1 1 B C 6 1_555 B G 18 1_555 0.331 -0.104 -0.048 1.209 -7.028 -0.449 6 B_C6:G18_B B 6 ? B 18 ? 19 1 1 B U 7 1_555 B A 17 1_555 -0.139 -0.018 -0.313 7.473 -8.112 -1.646 7 B_U7:A17_B B 7 ? B 17 ? 20 1 1 B G 8 1_555 B C 16 1_555 -0.483 -0.143 0.066 2.613 -12.128 -0.699 8 B_G8:C16_B B 8 ? B 16 ? 19 1 1 B G 9 1_555 B C 15 1_555 -0.708 -0.205 0.525 6.468 -7.320 1.714 9 B_G9:C15_B B 9 ? B 15 ? 19 1 1 B U 10 1_555 B U 14 1_555 3.345 -1.885 0.664 2.373 -9.188 12.205 10 B_U10:U14_B B 10 ? B 14 ? 16 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 23 1_555 B G 2 1_555 B C 22 1_555 -0.032 -1.664 3.200 -1.581 7.198 28.985 -4.599 -0.239 2.715 14.095 3.097 29.888 1 BB_G1G2:C22C23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B G 2 1_555 B C 22 1_555 B G 3 1_555 B C 21 1_555 0.037 -1.722 3.108 -2.916 5.046 29.419 -4.272 -0.616 2.764 9.815 5.672 29.978 2 BB_G2G3:C21C22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B G 3 1_555 B C 21 1_555 B A 4 1_555 B U 20 1_555 -0.102 -1.718 3.314 0.968 7.761 33.066 -4.129 0.323 2.845 13.404 -1.672 33.953 3 BB_G3A4:U20C21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B A 4 1_555 B U 20 1_555 B C 5 1_555 B G 19 1_555 0.100 -1.859 3.325 -1.341 4.416 33.248 -3.930 -0.388 3.053 7.672 2.329 33.558 4 BB_A4C5:G19U20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B C 5 1_555 B G 19 1_555 B C 6 1_555 B G 18 1_555 -0.072 -1.837 3.253 2.193 7.768 30.738 -4.678 0.504 2.709 14.345 -4.050 31.756 5 BB_C5C6:G18G19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B C 6 1_555 B G 18 1_555 B U 7 1_555 B A 17 1_555 -0.012 -1.664 3.149 2.396 7.256 26.866 -5.001 0.537 2.607 15.230 -5.028 27.912 6 BB_C6U7:A17G18_BB B 6 ? B 18 ? B 7 ? B 17 ? 1 B U 7 1_555 B A 17 1_555 B G 8 1_555 B C 16 1_555 0.196 -1.728 3.416 -3.309 9.968 31.058 -4.720 -0.897 2.712 17.982 5.969 32.744 7 BB_U7G8:C16A17_BB B 7 ? B 17 ? B 8 ? B 16 ? 1 B G 8 1_555 B C 16 1_555 B G 9 1_555 B C 15 1_555 -0.105 -1.951 3.004 -6.188 1.321 28.144 -4.186 -1.044 2.868 2.673 12.525 28.833 8 BB_G8G9:C15C16_BB B 8 ? B 16 ? B 9 ? B 15 ? 1 B G 9 1_555 B C 15 1_555 B U 10 1_555 B U 14 1_555 0.407 -0.551 3.366 2.028 15.159 47.608 -1.772 -0.333 3.081 18.237 -2.440 49.867 9 BB_G9U10:U14C15_BB B 9 ? B 15 ? B 10 ? B 14 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' 750 Bruker AVANCE 4 'Bruker Avance' 900 Bruker AVANCE 5 'Bruker Avance' # _atom_sites.entry_id 2N3O _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_