HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-JUN-15 2N4B TITLE EC-NMR STRUCTURE OF RALSTONIA METALLIDURANS RMET_5065 DETERMINED BY TITLE 2 COMBINING EVOLUTIONARY COUPLINGS (EC) AND SPARSE NMR DATA. NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET CRR115 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS METALLIDURANS CH34; SOURCE 3 ORGANISM_TAXID: 266264; SOURCE 4 STRAIN: CH34 / ATCC 43123 / DSM 2839; SOURCE 5 GENE: RMET_5065; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P KEYWDS EC-NMR, AHSA1, COG3832, PF08327, START DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 UNKNOWN FUNCTION, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.MARKS,G.T.MONTELIONE,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 15-MAY-24 2N4B 1 REMARK REVDAT 4 14-JUN-23 2N4B 1 REMARK SEQADV REVDAT 3 12-AUG-15 2N4B 1 JRNL REVDAT 2 22-JUL-15 2N4B 1 JRNL REVDAT 1 01-JUL-15 2N4B 0 JRNL AUTH Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.S.MARKS,G.T.MONTELIONE JRNL TITL PROTEIN STRUCTURE DETERMINATION BY COMBINING SPARSE NMR DATA JRNL TITL 2 WITH EVOLUTIONARY COUPLINGS. JRNL REF NAT.METHODS V. 12 751 2015 JRNL REFN ISSN 1548-7091 JRNL PMID 26121406 JRNL DOI 10.1038/NMETH.3455 REMARK 0 REMARK 0 THIS ENTRY 2N4B REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA IN 2LCG DETERMINED BY AUTHORS: T.A.RAMELOT, REMARK 0 Y.YANG,D.WANG,C.CICCOSANTI,H.JANJUA,R.NAIR,T.B.ACTON,R.XIAO, REMARK 0 J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL REMARK 0 GENOMICS CONSORTIUM (NESG) REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ROSETTA, REDUCE REMARK 3 AUTHORS : BAKER, D. (ROSETTA), RICHARDSON, J., RICHARDSON, REMARK 3 D. (REDUCE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REDCAT WERE USED TO SIMULATE 1 RDC DATA REMARK 3 SET FROM THE REFERENCE STRUCTURE. PROTONS FROM THE ROSETTA REMARK 3 MODELS WERE REMOVED AND ADDED BACK USING REDUCE. REMARK 4 REMARK 4 2N4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000104404. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : EVFOLD-PLM, ASDP, CYANA, EC-NMR, REMARK 210 TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: AUTHOR USED THE EXPERIMENTAL DATA FROM ENTRY 2LCG. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 35 33.97 -87.39 REMARK 500 1 LYS A 77 -31.13 -150.03 REMARK 500 1 HIS A 137 127.51 -36.18 REMARK 500 2 ASP A 35 32.42 -88.44 REMARK 500 2 PHE A 64 139.98 -170.00 REMARK 500 3 ASP A 35 41.29 -93.81 REMARK 500 3 LYS A 77 -28.83 -150.08 REMARK 500 3 GLU A 136 -38.81 -39.54 REMARK 500 3 HIS A 137 139.81 -39.95 REMARK 500 4 ALA A 32 -65.93 -104.96 REMARK 500 4 GLU A 75 29.98 48.07 REMARK 500 4 HIS A 137 -55.08 -125.34 REMARK 500 5 ALA A 32 -84.26 -103.98 REMARK 500 5 LYS A 77 -34.16 -132.67 REMARK 500 5 HIS A 137 -40.32 -132.52 REMARK 500 6 THR A 21 72.94 -150.49 REMARK 500 6 ALA A 32 -79.96 -97.07 REMARK 500 6 LYS A 77 -31.80 -133.43 REMARK 500 6 HIS A 137 -44.63 -134.92 REMARK 500 7 ALA A 32 -82.07 -100.25 REMARK 500 7 LYS A 77 -32.52 -132.95 REMARK 500 7 HIS A 137 -55.51 -125.58 REMARK 500 8 ALA A 32 -79.52 -95.42 REMARK 500 8 LYS A 77 -38.68 -131.58 REMARK 500 8 HIS A 137 -55.14 -125.32 REMARK 500 9 THR A 21 75.10 -150.07 REMARK 500 9 ALA A 32 -81.12 -100.05 REMARK 500 9 LYS A 77 -31.03 -140.69 REMARK 500 9 HIS A 137 -54.92 -125.17 REMARK 500 10 ALA A 32 -84.96 -104.52 REMARK 500 10 HIS A 137 -38.69 -130.23 REMARK 500 11 ASN A 30 133.89 -38.93 REMARK 500 11 LYS A 77 -27.98 -151.73 REMARK 500 11 LEU A 135 -127.12 -94.77 REMARK 500 12 GLU A 75 29.29 46.18 REMARK 500 12 LEU A 135 -153.43 -87.55 REMARK 500 12 GLU A 136 76.43 -69.72 REMARK 500 13 ALA A 32 179.36 -59.95 REMARK 500 13 GLU A 75 29.42 48.85 REMARK 500 14 LEU A 135 -146.81 -91.33 REMARK 500 14 GLU A 136 75.28 -70.00 REMARK 500 15 ASN A 76 53.16 36.58 REMARK 500 15 LYS A 77 -24.46 -151.79 REMARK 500 15 LEU A 135 -125.12 -94.59 REMARK 500 16 LYS A 77 -31.53 -146.88 REMARK 500 16 LEU A 135 -149.00 -92.29 REMARK 500 17 ALA A 32 -179.87 -61.70 REMARK 500 17 GLU A 75 29.68 49.03 REMARK 500 18 LYS A 77 -21.30 -141.47 REMARK 500 18 LEU A 135 -156.20 -86.09 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17611 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-CRR115 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 2LCG RELATED DB: PDB REMARK 900 RELATED ID: 2N42 RELATED DB: PDB REMARK 900 RELATED ID: 2N44 RELATED DB: PDB REMARK 900 RELATED ID: 2N45 RELATED DB: PDB REMARK 900 RELATED ID: 2N46 RELATED DB: PDB REMARK 900 RELATED ID: 2N47 RELATED DB: PDB REMARK 900 RELATED ID: 2N48 RELATED DB: PDB REMARK 900 RELATED ID: 2N49 RELATED DB: PDB REMARK 900 RELATED ID: 2N4A RELATED DB: PDB REMARK 900 RELATED ID: 2N4C RELATED DB: PDB REMARK 900 RELATED ID: 2N4D RELATED DB: PDB REMARK 900 RELATED ID: 2N4F RELATED DB: PDB DBREF 2N4B A 1 134 UNP Q1LD49 Q1LD49_RALME 1 134 SEQADV 2N4B LEU A 135 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B GLU A 136 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B HIS A 137 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B HIS A 138 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B HIS A 139 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B HIS A 140 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B HIS A 141 UNP Q1LD49 EXPRESSION TAG SEQADV 2N4B HIS A 142 UNP Q1LD49 EXPRESSION TAG SEQRES 1 A 142 MET ASN ILE THR VAL GLU THR THR VAL ALA ALA PRO VAL SEQRES 2 A 142 GLY LYS VAL TRP ARG ALA TYR THR THR PRO GLU ASP ILE SEQRES 3 A 142 LYS GLN TRP ASN ALA ALA SER ASP ASP TRP HIS THR THR SEQRES 4 A 142 ALA ALA THR VAL ASP LEU ARG GLU GLY GLY ALA PHE SER SEQRES 5 A 142 SER ARG MET GLU ALA LYS ASP GLY SER MET GLY PHE ASP SEQRES 6 A 142 PHE ALA GLY THR TYR THR LYS VAL VAL GLU ASN LYS ARG SEQRES 7 A 142 ILE GLU TYR ALA PHE GLY ASP ARG THR ALA LYS VAL GLU SEQRES 8 A 142 PHE LEU GLU ALA PRO GLN GLY VAL THR VAL ARG VAL SER SEQRES 9 A 142 PHE VAL ALA GLU THR GLU TYR PRO VAL GLU GLN GLN GLN SEQRES 10 A 142 GLN GLY TRP GLN ALA ILE LEU ASN ASN PHE LYS ARG HIS SEQRES 11 A 142 VAL GLU SER HIS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 12 THR A 21 1 10 HELIX 2 2 THR A 22 ASN A 30 1 9 HELIX 3 3 PRO A 112 LEU A 135 1 24 SHEET 1 A 7 ASN A 2 VAL A 9 0 SHEET 2 A 7 VAL A 99 VAL A 106 -1 O VAL A 99 N VAL A 9 SHEET 3 A 7 ARG A 86 GLU A 94 -1 N LEU A 93 O THR A 100 SHEET 4 A 7 ARG A 78 PHE A 83 -1 N ILE A 79 O VAL A 90 SHEET 5 A 7 PHE A 64 VAL A 74 -1 N THR A 71 O GLU A 80 SHEET 6 A 7 ALA A 50 MET A 55 -1 N SER A 53 O PHE A 66 SHEET 7 A 7 THR A 39 ALA A 40 -1 N ALA A 40 O ARG A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1